Welcome to Galaxy for Ecology — a web platform to get, process, analyze and visualize biodiversity data

Guide tour

Are you new to Galaxy, or returning after a long time, and looking for help to get started?

Take a guide tour through Galaxy’s user interface.

Tutorials

Want to learn about ecology analyses?

Check our tutorials

Workflows

Access public workflows

Projects

Citizen science on marmalade hoverflies

Vigie Nature H2020 European project

Want to classify hoverflies pictures?

The aim of the task is to classify ~5000 hoverfly images collected by the SPIPOLL citizen science project and identify the sex by looking at their relative eyes position.

Try our crowdsourcing project

Antarctic use cases

French BON EBV Operationalization pilot

TUTORIALS

Phylodiversity analysis Ecoregionalization

WORKFLOWS

State of the Environment in Antarctic Ecoregionalization

TOOLS

Several tools corresponding to these workflows and tutorials can be found in Galaxy's left sidebar under the ecoregionalization section, the phylodiversity section et the interactive tools section.

PAMPA

French BON EBV Operationalization pilot

TUTORIALS

Biodiversity metrics with PAMPA

WORKFLOWS

PAMPA toolsuite workflow

TOOLS

PAMPA interactive tool Community metrics GLM on community GLM on population

GAIA DATA

TUTORIALS

Species distribution modeling Sentinel 2 Visualize EBV cube data

TOOLS

JupyterGIS interactive tool Pangeo intercative tool QGIS interactive tool STAC catalog

MOOREV

IA Annotation

TUTORIALS

AI pipeline for annotating marine species Object detection with YOLO

WORKFLOWS

YOLO DeepSeaSpy Segment fishes on videos

TOOLS

SAM3 Edit COCO COCO Annotation Visualizer COCO to LabelMe JSON Converter Perform YOLO training Perform YOLO image labeling

GINAMO Biodiversa+

French BON EBV Operationalization pilot Genetic composition

WORKFLOWS

From SSRs to genetic EBVs From SNPs to genetic EBVs SSR filtering VCF filtering

TOOLS

LDNe estimation VCF filtering Genetic Clustering Filtering SSR DAPC to genotype data Genetic format conversion Population Genetics Statistics Split VCF by pop Keep/remove individuals (VCF) Random SNP subsetting (VCF)

One Forest Vision

IA Annotation

TOOLS

DeepForestVision

RELATED PROJECT

PEPR FORESTT

Tools

Galaxy Ecology offers an extensive suite of tools designed for biodiversity data analysis. With hundreds of tools at your disposal, you can explore and perform a wide variety of tasks, including data manipulation, statistical analysis, biodiversity and environmental data retrieval, and visualization.

• General Tools
  These tools cover data manipulation, text processing, file conversion, sorting, filtering, and a wide range of data visualization options, including bar charts, scatterplots, heatmaps, and more.

• Statistical Tools
  A comprehensive set of statistical methods for data preprocessing, hypothesis testing, classification, multivariate analysis, and model-based techniques like regression and machine learning.

• Biodiversity data oriented Tools
  Galaxy Ecology provides specialized tools for biodiversity data, including species occurrence data retrieval, phenology analysis, acoustic monitoring, and GIS data handling.

Explore the full range of tools by using the Tools Panel on the left side of the interface. There, you’ll find an organized list of categories to help you find exactly what you need for your ecological research.