Welcome to Galaxy Proteomics
Galaxy Proteomics is a multiple-‘omics’ data-analysis platform with particular emphasis on mass spectrometry-based proteomics. It is hosted by GalaxyEU and maintained by the GalaxyP team from the University of Minnesota, USA.
GalaxyP Resources
Content
Tutorials
Are you new to Galaxy, or returning after a long time, and looking for help to get started? Take a guided tour through Galaxy’s user interface.
Want to learn more about proteomics? Check out the following lesson tutorials from the Galaxy Training Network:Gateways
Other specialized Galaxy servers curated by the Galaxy-P team containing tools, workflows, and hands-on/video tutorials.
Research Projects
Featured Galaxy-P tools supported with manuscripts, visualization plugins, docker containers, and hands-on tutorials.
| Tool | Description | Paper | Tutorial | Docker |
|---|---|---|---|---|
| CRAVAT-P | Stands for Cancer Related Analysis of Variants Toolkit for Proteogenomics. Submits, checks for, and retrieves data for cancer annotation | Sajulga et. al 2018 | Docker | |
| QuanTP | Correlation between protein and transcript | Kumar et. al 2019 | Docker | |
| MetaQuantome | Quantitative analysis of the function and taxonomy of microbiomes and their interaction |
News and Events
- Galaxy at the International IUSSI Congress 2026 — Exploring termite gut microbiome recovery At IUSSI 2026 in Freiburg, Mina Hojat Ansari presented how reproducible, multi-layer metagenomic analysis in Galaxy helps investigate termite gut microbiome recovery after molting.
- Galaxy Training Academy 2026: A Global Week of Learning Galaxy Training Academy 2026 brought together more than 2,200 registrations from 108 countries for a free, global week of self-paced Galaxy training across 11 tracks.
- Galaxy Newsletter September 2026 Explore Galaxy 26.1 and Galaxy Labs, welcome UseGalaxy Canada, see how Galaxy Australia is simplifying data movement, discover Galaxy-powered wildlife ecology and public-health workflows, and find jobs, training, and events across the community.
- The European Galaxy Project Website Is Now Fully Served by the Galaxy Hub After ten years on a Jekyll-on-GitHub setup, galaxyproject.eu is now completely powered by the Galaxy Hub — a fast, metadata-driven home that any Galaxy community can reuse.
- Galaxy 26.1 is here! Galaxy 26.1 introduces Galaxy Notebooks, context-aware GalaxyAI agents, Model Context Protocol support, bulk dataset storage migration, a modern workflow extraction interface, favorite and recent tools, and clearer workflow execution monitoring. Explore the user release notes.
- microGalaxy / Microbiology Community Meeting Sep 9 · onlineJoin us on September 9th to explore how BioDIGs is collaboratively bridging soil microbiomes, the environment, and health and how we can collaborate!
- IBSB 2026: Bioimage Analysis with Galaxy (Workshop + Symposium Talk) Sep 16 - Sep 18 · Leibniz-HKIExplore open-source bioimage analysis with Galaxy in this hands-on workshop and conference talk at IBSB 2026.
- Small Scale Galaxy Admins Meeting Sep 17 · Online, Global
- ESG4Stars kick-off meeting Oct 5 - Oct 6 · Department of Computer Science, University of FreiburgOur new EU-funded research infrastructure project to reduce the environmental footprint of scientific computing on platforms like Galaxy will begin in October.
- The 2nd Galaxy Tool Development Workshop - Now Open to the wider Community! Oct 7 - Oct 9 · Department of Computer Science, University of FreiburgJoin us in Freiburg to learn how to build, test, and publish your own tools for the Galaxy platform - hands-on, beginner-friendly, and led by experienced Galaxy developers
Contributors
Our Data Policy
| Registered Users | Unregistered Users | FTP Data | GDPR Compliance |
|---|---|---|---|
| For all different storage options, for detailed explanations of data retention policies, and ways how to increase your quota please refer to our dedicated storage site. | Processed data will only be accessible during one browser session, using a cookie to identify your data. This cookie is not used for any other purposes (e.g. tracking or analytics). If UseGalaxy.eu service is not accessed for 90 days, those datasets will be permanently deleted. | Any user data uploaded to our FTP server should be imported into Galaxy as soon as possible. Data left in FTP folders for more than 3 months, will be deleted. | The Galaxy service complies with the EU General Data Protection Regulation (GDPR). You can read more about this on our Terms and Conditions. |