Welcome to Galaxy Proteomics
Galaxy Proteomics is a multiple-‘omics’ data-analysis platform with particular emphasis on mass spectrometry-based proteomics. It is hosted by GalaxyEU and maintained by the GalaxyP team from the University of Minnesota, USA.
GalaxyP Resources
Content
Tutorials
Are you new to Galaxy, or returning after a long time, and looking for help to get started? Take a guided tour through Galaxy’s user interface.
Want to learn more about proteomics? Check out the following lesson tutorials from the Galaxy Training Network:Gateways
Other specialized Galaxy servers curated by the Galaxy-P team containing tools, workflows, and hands-on/video tutorials.
Research Projects
Featured Galaxy-P tools supported with manuscripts, visualization plugins, docker containers, and hands-on tutorials.
| Tool | Description | Paper | Tutorial | Docker |
|---|---|---|---|---|
| CRAVAT-P | Stands for Cancer Related Analysis of Variants Toolkit for Proteogenomics. Submits, checks for, and retrieves data for cancer annotation | Sajulga et. al 2018 | Docker | |
| QuanTP | Correlation between protein and transcript | Kumar et. al 2019 | Docker | |
| MetaQuantome | Quantitative analysis of the function and taxonomy of microbiomes and their interaction |
News and Events
- Galaxy Team Presents SpatialData Ecosystem in Galaxy at scverse Conference 2026 The European Galaxy team presented the Galaxy SpatialData toolsuite at the third scverse conference in Copenhagen
- ELIXIR highlights the impact of long-term funding on Galaxy ELIXIR highlights how sustained investments in research infrastructure have supported the development and impact of Galaxy.
- In memoriam: Ross Lazarus Sorry to have drifted off but I seem to be moving out of that Galaxy and into another...
- IBSB 2026 – Bringing Galaxy Bioimage Analysis to Jena Galaxy bioimage analysis at IBSB 2026 in Jena: a symposium talk, a hands-on workshop and new tool collaborations.
- miaDash: explore microbiome data interactively in Galaxy The miaDash Shiny app from the Bioconductor microbiome team is now an interactive tool on usegalaxy.eu: import, analyse and visualise microbiome data without writing a line of code.
- Workshop: Sustainable research computing with Galaxy: Workflows, infrastructure and practice - 2 daysTwo-day workshop in Madrid exploring how research workflows can be made more sustainable (19-20 November). Registration open now
- Galaxy and AI in small subjects - 2 days Mainz
- Small Scale Galaxy Admins Meeting Online, Global
- Digital Humanities Day at the University of Freiburg Freiburg
- Introduction to the Data Analysis Platform Galaxy (in German) Freiburg, Germany
Contributors
Our Data Policy
| Registered Users | Unregistered Users | FTP Data | GDPR Compliance |
|---|---|---|---|
| For all different storage options, for detailed explanations of data retention policies, and ways how to increase your quota please refer to our dedicated storage site. | Processed data will only be accessible during one browser session, using a cookie to identify your data. This cookie is not used for any other purposes (e.g. tracking or analytics). If UseGalaxy.eu service is not accessed for 90 days, those datasets will be permanently deleted. | Any user data uploaded to our FTP server should be imported into Galaxy as soon as possible. Data left in FTP folders for more than 3 months, will be deleted. | The Galaxy service complies with the EU General Data Protection Regulation (GDPR). You can read more about this on our Terms and Conditions. |