GrAPPA

GrAPPA is a web-based interface constructed on the Galaxy framework for graph theoretical tools. It contains novel combinatorial methods integrated into a complete microarray analysis toolchain, from uploading raw high-throughput data to visualization of results.

This is a Domain specific server.

Links

Comments

  • Efforts to increase GrAPPA’s functionality are underway. Features now being incorporated include:
    • a larger repertoire of pre-processing options, including Gaussian graphical models and an expanded set of correlation metrics such as mutual information
    • more powerful post-processing capabilities, for example, software tools for Bayesian analysis
    • links to related web-centric resources, e.g. GeneWeaver, so that users can seamlessly transfer data and results

User Support

  • Email Support
  • Suggestions and feedback from the user community are encouraged.

Quotas

  • You have to verify your email account before running jobs.
  • Quota: 5GB. To have more space, please contact grappa@utk.edu
  • Data will be kept 60 days after deletion from history or library.
  • FTP is not activated in this instance.

Citation(s)

Sponsor(s)