deepTools
| Public server: | |
|---|---|
| Container: | |
| Scope: | |
| Summary: | deepTools is a suite of user-friendly tools for the visualization, quality control and normalization of data from high-throughput DNA sequencing experiments. |
Comments
- deepTools home page at GitHub
- deepTools offers multiple methods for highly-customizable data visualization that immensely aid hypothesis generation and data interpretation. It also offers all the tools needed to create coverage files in standard bedGraph and bigWig file formats allowing various normalization procedures and comparisons between two files (for example, treatment and control).
- deepTools: a flexible platform for exploring deep-sequencing data* presentation by Sarah Diehl at GCC2014
- deepTools deployment description
User Support
Quotas
- 20 GB for unregistered users, 30 GB for registered users
Citations
- deepTools2: a next generation web server for deep-sequencing data analysis, Fidel Ramírez, Devon P Ryan, Björn Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S Richter, Steffen Heyne, Friederike Dündar and Thomas Manke, Nucl. Acids Res. (2016) doi: 10.1093/nar/gkw257
- deepTools: a flexible platform for exploring deep-sequencing data, Fidel Ramírez, Friederike Dündar, Sarah Diehl, Björn A. Grüning, and Thomas Manke. Nucl. Acids Res. first published online May 5, 2014 doi:10.1093/nar/gku365
- deepTools tagged publications in the Galaxy Publication library
Sponsors
- Bioinformatics and Deep-Sequencing Units at the Max Planck Institute for Immunobiology and Epigenetics.