|Summary:||Phylogenetics and gene interaction|
- PIA code in Bitbucket
- PIA (Phylogenetically Informed Annotation) is a set of tools for the Galaxy Bioinformatics Platform. In general, PIA uses BLAST, an alignment program, and RAxML's read placement algorithm to put unknown sequences into pre-calculated phylogenetic trees. We provide 102 genes called LIT (Light Interaction Toolkit) - vision genes like phototransduction genets - for use in PIA.
- Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms, by Speiser, et al. in BMC Bioinformatics 2014, 15:350 doi:10.1186/s12859-014-0350-x
- PIA tagged publications in the Galaxy Publication library