SMAGEXP

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Summary:SMAGEXP (Statistical Meta-Analysis for Gene EXPression) provides a unified way to carry out meta-analysis of gene expression data, while taking care of their specificities.

Comments

  • Handles microarray data from Gene Expression Omnibus (GEO) database or custom data from affymetrix microarrays. These data are then combined to carry out meta-analysis using metaMA package. SMAGEXP also offers to combine Next Generation Sequencing (NGS) RNA-seq analysis from DESeq2 results thanks to metaRNASeq package. In both cases, key values, independent from the technology type, are reported to judge the quality of the meta-analysis.
  • SMAGEXP is available in the Galaxy Toolshed as well.

User Support

Quotas

  • None

Citations

Sponsors

  • Univ. Lille Droit et Santé, Lille, France and Inria Lille-Nord Europe, MODAL, Lille, France.