Galaxy is an open-source platform for FAIR data analysis that enables users to:

  • use tools from various domains (that can be plugged into workflows) through its graphical web interface.
  • run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
  • manage data by sharing and publishing results, workflows, and visualizations.
  • ensure reproducibility by capturing the necessary information to repeat and understand data analyses.

The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.

The French Galaxy server

The French Galaxy server UseGalaxy.fr is maintained by IFB NNCR Cluster Task force. Please check our Terms of Use and data retention police before using the server. We offer thousands of tools, increased quota on temporary basis, and compute infrastructure for trainers through Training Infrastructure as a Service (TIaaS).

The following regional platforms, members of IFB, are involved in the maintenance and development of UseGalaxy.fr:

Contact

Ask for help, tools, or temporary increase of quota on our support forum

qsupport



Contact support

Training

If you are organising a training session, you can book computing resources using the TIaaS system

training

TIaaS request

GalaxyCat

Can't find a tool on usegalaxy.fr? Why not search on the IFB Galaxy Catalog ?

GalaxyCat



Browse GalaxyCat

Citation

Have you used the French Galaxy server for your data analysis?



citation

Cite the server

Team

The French Galaxy team is distributed across different cities in France.



team

Meet the team

Communities: domain-centric Galaxy subdomains

Workflow4Metabolomics

Data processing, analysis and annotation for the metabolomics community

Workflow4Metabolomics

Workflow4Metabolomics

ProteoRE

Functional analysis and exploration of proteomics and transcriptomics data in biomedical research

ProteORE


ProteoRE

Covid19

Variant analysis, consensus using communuty approuved workflows and datasets

Covid19


Covid19

Metabarcoding

With the following tools and pipelines : FROGS, Qiime, Mothur, Obitools, DADA2, PICRUSt

Metabarcoding


Metabarcoding

Met4J

Open-source Java library dedicated to the structural analysis of metabolic networks

met4j


Met4j

MNHN

Tools from the French Muséum National d'Histoire Naturelle

MNHN


MNHN

News

Galaxy Release 24.0

Check out the newest features and updates on Galaxy!

Galaxy in Research: Exploring the Hidden World of Antarctic Toxins with Galaxy

Discover how Galaxy is helping to unravel the hidden world of peptide toxins in an Antarctic marine invertebrate.

InvenioRDM integration in Galaxy

Discover a more streamlined approach to research data management with Galaxy's integration with InvenioRDM-compatible repositories.

How to improve the annotation of Galaxy resources? Outcomes of an online hackathon for improving the annotation of Galaxy resources for microbial data resources

Find out how we improved the annotation of Galaxy tools and training material for microbiological data analysis!

Poster highlight: Implementation of a reproducible pipeline for producing seasonal Arctic sea ice forecasts (Stoeckl et al. 2023)

We are thrilled to highlight the poster presentation by Vanessa Stoeckl at the European Geoscience Union (EGU) Conference 2024. "

Events

May 14 - May 23RDA 22nd Plenary Meeting – Fully Virtual

The Research Data Alliance (RDA) Plenary Meeting will focus on collaboration and engagement with their global community through the sharing of local experiences, best practices and recommendations. The European Galaxy project is invited to talk about Research Data Management in Galaxy and to give an overview of Galaxy features that serve different parts of the data life cycle.

May 16Small Scale Galaxy Admins Meeting

May 17Making clinical datasets FAIR

Jun 10 - Jun 11ELIXIR All Hands 2024

The 10th ELIXIR All Hands meeting brings together members of the ELIXIR community from across the ELIXIR Nodes, and collaborators from partner organisations. Galaxy will be presented by different nodes.

Jun 17 - Jun 21Workshop on high-throughput sequencing data analysis with Galaxy

This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.