Welcome to NanoGalaxy — a webserver to process, analyse and visualize Oxford Nanopore Technologies (ONT) data and similar long-reads technologies.
Get started
Are you new to Galaxy, or returning after a long time, and looking for help to get started? Take a guided tour through Galaxy’s user interface.
Check also the standard but customizable workflows available there.
Tools
A collection of best practice and popular tools are integrated (and are expanding) in this custom Galaxy instance. The ONT-oriented and -specific subset includes:
Polishing, QC and preprocessing
Genome assembly
Visualisation
Taxonomy and metagenomics
Tutorials
We are passionate about training. So we are working in close collaboration with the Galaxy Training Network (GTN) to develop training materials of data analyses based on Galaxy (Batut et al. 2017). These materials hosted on the GTN GitHub repository are available online at https://training.galaxyproject.org.
Workflows
To orchestrate tools and help users with their analyses, some best practice workflows are prepared and available for all users. The workflows can be extended using similar and alternative combinations using the Galaxy workflow editor.
The workflows are available in the Shared Workflows View and are labeled with “ONT”.
Basic workflows inspired by the Nanopolish tutorials
Genome assembly: Flye-based WF for highly repetitive genomes [Schmid et al. NAR 2018]
Genome assembly: Unicycler-based WF for Klebsiella pneumoniae [Wick et al. Microbial genomics 2017]
Metagenomics: taxa classification
Our Data Policy
| Registered Users | Unregistered Users | FTP Data | GDPR Compliance |
|---|---|---|---|
| For all different storage options, for detailed explanations of data retention policies, and ways how to increase your quota please refer to our dedicated storage site. | Processed data will only be accessible during one browser session, using a cookie to identify your data. This cookie is not used for any other purposes (e.g. tracking or analytics). If UseGalaxy.eu service is not accessed for 90 days, those datasets will be permanently deleted. | Any user data uploaded to our FTP server should be imported into Galaxy as soon as possible. Data left in FTP folders for more than 3 months, will be deleted. | The Galaxy service complies with the EU General Data Protection Regulation (GDPR). You can read more about this on our Terms and Conditions. |