Welcome to Galaxy for Plant Biology

The Plant Analysis Workbench is a comprehensive set of analysis tools and consolidated workflows. The workbench is based on the Galaxy framework, which guarantees simple access, easy extension, flexible adaption to personal and security needs, and sophisticated analyses independent of command-line knowledge.

Content

Get started

Are you new to Galaxy, or returning after a long time, and looking for help to get started? Take a guided tour through Galaxy’s user interface.

Training

We are working in close collaboration with the Galaxy Training Network (GTN) to develop training materials of data analyses based on Galaxy. If you want to know more about the GTN or how to become part of the Galaxy community, check the videos below!

Workshops

Training material

All relevant materials for plant-related data analysis can also be found within the GTN.

LessonSlidesHands-onInput datasetWorkflowsGalaxy History
Welcome and introduction to Galaxy /
An Introduction to Transcriptomics /
Quality Control / /
Mapping / /
miRNA data analysis / /
mRNA data analysis and miRNA target prediction /
An introduction to single-cell RNA-seq data analysis /
Understanding Barcodes / /
Pre-processing of 10X Single-Cell RNA Datasets /
Clustering 3K PBMCs with ScanPy /
Analysis of plant scRNA-Seq data using ScanPy /

Partners

This service is a joint project between different groups from the DataPLANT Consortium, the BioDATEN project, VIB, IPK, and the University of Freiburg. The service is part of the European Galaxy server and is maintained by the RNA Bioinformatics Center (RBC) as part of de.NBI and ELIXIR.

DataPLANTBioDATENVIBTechnische Universitaet KaiserslauternForschungszentrum JuelichIPK

Our Data Policy

Registered UsersUnregistered UsersFTP DataGDPR Compliance
For all different storage options, for detailed explanations of data retention policies, and ways how to increase your quota please refer to our dedicated storage site.Processed data will only be accessible during one browser session, using a cookie to identify your data. This cookie is not used for any other purposes (e.g. tracking or analytics). If UseGalaxy.eu service is not accessed for 90 days, those datasets will be permanently deleted.Any user data uploaded to our FTP server should be imported into Galaxy as soon as possible. Data left in FTP folders for more than 3 months, will be deleted.The Galaxy service complies with the EU General Data Protection Regulation (GDPR). You can read more about this on our Terms and Conditions.