Welcome to the Galaxy Community Hub
The meeting point where you can find curated documentation for all things Galaxy
Galaxy is an open-source platform for FAIR data analysis that enables users to:
- Use tools from various domains (that can be plugged into workflows) through its graphical web interface.
- Run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
- Manage data by sharing and publishing results, workflows, and visualizations.
- Ensure reproducibility by capturing the necessary information to repeat and understand data analyses.
The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.
Galaxy for
SCIENTISTS
Galaxy for
TRAINERS
Galaxy for
TOOL AUTHORS
Galaxy for
DEVELOPERS
Galaxy for
ADMINS
News
Inference using a publicly available pre-trained AI model (BioModels) in Galaxy
Use a Galaxy tool for making prediction on test data using publicly available pre-trained AI model (BioModels) served via a Docker container
EuroScienceGateway project: new EGI Check-in and WLCG IAM backends available in python-social-auth
Python-social-auth release 4.5.0 includes two new backends contributed by EuroScienceGateway
Events
Dec 11 - Dec 152nd BioHackathon Germany
The 2nd BioHackaton Germany will take palce in Bielefeld and has 11 exciting projects.
Mar 4 - Mar 8Workshop on High-Throughput Data Analysis with Galaxy
This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.
Jun 24 - Jun 292024 Galaxy Community Conference (GCC2024)
The annual gathering of the Galaxy Community with opportunities to hear latest developments, get training, and meet everyone involved.
Recent Videos
How Galaxy Imaging makes cloud-based image analysis possible
Presented at the Euro-BioImaging Virtual Pub
How to launch Galaxy workflows from Dockstore
Dockstore and Galaxy are now integrated
Galaxy 21.09 Release Highlights
New Toolbox; Change Datatype + DBkey; Remote Files Enhancements
Image analysis in Galaxy - pain points and lessons learnt
October 28 Galaxy Developer Round Table
Fast, scalable, free, & user-friendly Galaxy workflows for reference genome assembly
The latest version of VGP's pipeline has been ported to Galaxy.
Blog
We are excited to share a new paper in preprint that shares the latest genome assembly pipeline used by the Vertebrate Genome Project in Galaxy! "
That's a wrap! Catch up on all the highlights from GCC2023 here!
Fighting Galactic Misconceptions (FGB): Misconception 1
Is Galaxy only useful for genome scientists? Absolutely Not!
Why we should support the underrepresented communities
Ninth blog post presenting the Outreachy project on Mental Health
Careers
Engineer position in workflows development for -omics data analysis in antibiotic resistance
Institut Français de Bioinformatique, PF Auvergne BioInformatique (AUBi), AUBIERE (Clermont Ferrand, France). Apply by Dec 15
PhD Student in Human-Compute Interaction
Bacon Brigade, School of Life, Health & Chemical Sciences, The Open University, Milton Keynes, United Kingdom. Apply by Jan 25
ELIXIR Belgium, VIB-UGent Center for Plant Systems Biology, Ghent, Belgium. Apply by Mar 30
Research Associate in Biomedical Data Science
Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore. Maryland, United States
New Platforms
Standard tools for DNA/RNA analysis and additional ones on project demands.
NGS data analysis focusing on microRNAs and their sequence variants—isomiRs.
An integrated workflow system to facilitate understanding of genotype-phenotype correlations in cases of mitochondrial dysfunction.
The Indian community server.
Determine the composition of a viral population.
A user-friendly website for metataxonomic analysis from raw reads to statistical analysis.
BLAST for barley, wheat, and rye. Part of IPK Crop Analysis Tools Suite (CATS).
Recent Publications
Martin, D.P., Lytras, S., Lucaci, A.G., Maier, Gruning, B. ... Kosakovsky Pond S.L. (2022). bioRxiv.
Giraldo-Calderón, G. I., Harb, O.S., Kelly S.A., and Rund S. SC, Roos D.S., McDowell M.A. (2022). Current Opinion in Insect Science.
Galaxy workflows for fragment-based virtual screening: A case study on the SARS-CoV-2 main protease
Bray, S., Dudgeon, T., Skyner, R., Backofen, R., Grüning, B., & Delft, F. von. (2021). ChemRxiv.
Chappell, K., Francou, B., Habib, C., Huby, T., Leoni, M., … Bouligand, J. (2021). Clinical Chemistry, hvab220.
MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging
Schapiro, D., Sokolov, A., Yapp, C., Chen, Y.-A., Muhlich, J. L., … Sorger, P. K. (2021). Nature Methods, 1–5.
miRGalaxy: Galaxy-Based Framework for Interactive Analysis of microRNA and isomiR Sequencing Data
Glogovitis, I., Yahubyan, G., Würdinger, T., Koppers-Lalic, D., & Baev, V. (2021). Cancers, 13(22), 5663.
Tangaro, M. A., Mandreoli, P., Chiara, M., Donvito, G., Antonacci, M., … Zambelli, F. (2021). BMC Bioinformatics, 22(15), 544.