Galaxy is an open-source platform for FAIR data analysis that enables users to:
- Use tools from various domains (that can be plugged into workflows) through its graphical web interface.
- Run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
- Manage data by sharing and publishing results, workflows, and visualizations.
- Ensure reproducibility by capturing the necessary information to repeat and understand data analyses.
The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.
Are you passionate about training in life sciences? The Freiburg Galaxy Team is looking for a team member who will develop, coordinate and implement training programs within international communities, especially via BioNT, a new multi-organization project funded by the European Commission, and via the Galaxy Training Network (GTN).
Official severity downgraded to HIGH, exploitability and impact to Galaxy is very low
How Galaxy manages your (meta)data
New scientific collaboration agreement between EOSC-Life and EOSC-Pillar
Publication of the Guideline
Oct 31 - Dec 19Analysis of biological data with Galaxy
Learn how to use Galaxy in YOUR research
Feb 6 - Feb 10Single-cell RNA-seq analysis using Galaxy
Participants will be guided through the droplet-based scRNA-seq analysis pipelines from raw reads to trajectories.
Apr 25 - Apr 26Galaxy Introduction for Life Scientists
This 1.5-day course will give a general introduction on the galaxy web-page structure, how to import data, run tools, share analyses and build workflows. Participants will run a whole NGS analysis using an RNA-seq dataset as an example.
Presented at the Euro-BioImaging Virtual Pub
Dockstore and Galaxy are now integrated
New Toolbox; Change Datatype + DBkey; Remote Files Enhancements
October 28 Galaxy Developer Round Table
The latest version of VGP's pipeline has been ported to Galaxy.
Tenth blog post presenting the Outreachy project on Mental Health
Ninth blog post presenting the Outreachy project on Mental Health
How Nextflow pipelines are integrated into Galaxy project at CFSAN, FDA.
Eighth blog post presenting the Outreachy project on Mental Health
Seventh blog post presenting the Outreachy project on Mental Health
University of Freiburg, Freiburg, Germany. Apply by Jan 9
Stratton Lab, Dept. of Physiology & Cell Biology, Davis Heart and Lung Research Institute, Columbus, Ohio, United States
Pfizer, Cambridge, Massachusetts, United States
Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore. Maryland, United States
Standard tools for DNA/RNA analysis and additional ones on project demands.
NGS data analysis focusing on microRNAs and their sequence variants—isomiRs.
An integrated workflow system to facilitate understanding of genotype-phenotype correlations in cases of mitochondrial dysfunction.
The Indian community server.
Determine the composition of a viral population.
A user-friendly website for metataxonomic analysis from raw reads to statistical analysis.
BLAST for barley, wheat, and rye. Part of IPK Crop Analysis Tools Suite (CATS).
Martin, D.P., Lytras, S., Lucaci, A.G., Maier, Gruning, B. ... Kosakovsky Pond S.L. (2022). bioRxiv.
Giraldo-Calderón, G. I., Harb, O.S., Kelly S.A., and Rund S. SC, Roos D.S., McDowell M.A. (2022). Current Opinion in Insect Science.
Bray, S., Dudgeon, T., Skyner, R., Backofen, R., Grüning, B., & Delft, F. von. (2021). ChemRxiv.
Chappell, K., Francou, B., Habib, C., Huby, T., Leoni, M., … Bouligand, J. (2021). Clinical Chemistry, hvab220.
Schapiro, D., Sokolov, A., Yapp, C., Chen, Y.-A., Muhlich, J. L., … Sorger, P. K. (2021). Nature Methods, 1–5.
Glogovitis, I., Yahubyan, G., Würdinger, T., Koppers-Lalic, D., & Baev, V. (2021). Cancers, 13(22), 5663.
Tangaro, M. A., Mandreoli, P., Chiara, M., Donvito, G., Antonacci, M., … Zambelli, F. (2021). BMC Bioinformatics, 22(15), 544.