Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational research.

  • Accessible: programming experience is not required to easily upload data, run complex tools and workflows, and visualize results.
  • Reproducible: Galaxy captures information so that you don't have to; any user can repeat and understand a complete computational analysis, from tool parameters to the dependency tree.
  • Transparent: Users share and publish their histories, workflows, and visualisations via the web.
  • Community centered: Our inclusive and diverse users (developers, educators, researchers, clinicians, etc.) are empowered to share their findings.

Welcome to the Galaxy Community Hub, where you'll find community curated documentation of all things Galaxy.

News

GTN Video LibraryVideos from online training events are now easier to find.

GTN API with OpenAPI 3 specificationAccess data from the GTN in a more accessible, API based way.

Galaxy Release 21.09Tool Panel Views, Collections, Reports, Remote Data, FastAPI, SQLAlchemy & much more!

November 2021 Galactic NewsGalaxy India, new jobs, events, blog posts, ...

BY-COVID: A new EU project for pandemic preparednessA new €12 million Horizon Europe funded project which will tackle the data challenges that can hinder effective pandemic response.

Events

Analysis of Functions Expressed by MicrobiomesNov 15. Microbiome experts and instructors from Galaxy community will teach online courses on microbiome analysis via interactive resources.

Galaxy Australia: an analytical service for Australian Life ScientistsNov 24. Learn Galaxy via two hands-on tutorials on how to use the service to rapidly and reproducibly analyse your data.

Metabolomics Community CallNov 25. Recent developments and future plans in the Galaxy Metabolomics community, including a summary of the metaRbolomics Hackathon.

Quality Control of Next Generation Sequencing ReadsNov 29. Assessing quality and filtering of FASTQ format data. Register by 22 November.

FROGS formation: tools for bioinformatics and statistics analyses with amplicon metagenomics data Nov 29. Learn to work with NGS data of 16S, 18S, ITS … DNA using our Galaxy instance and the FROGS pipeline.

Recent Videos

How Galaxy Imaging makes cloud-based image analysis possiblePresented at the Euro-BioImaging Virtual Pub

How to launch Galaxy workflows from DockstoreDockstore and Galaxy are now integrated

Galaxy 21.09 Release HighlightsNew Toolbox; Change Datatype + DBkey; Remote Files Enhancements

Image analysis in Galaxy - pain points and lessons learntOctober 28 Galaxy Developer Round Table

Fast, scalable, free, & user-friendly Galaxy workflows for reference genome assemblyThe latest version of VGP's pipeline has been ported to Galaxy.

Blog

FORCeS eScience course reportTools in Climate Science: Linking Observations with Modelling

Sunsetting the CloudLaunch serviceThere are now better alternatives to using Galaxy on the cloud

SARS-CoV-2 analysis training with Galaxy: a perspective from AfricaThe switch to online bioinformatics training forced by the COVID-19 pandemic has opened spaces for collaboration in ways that were previously limited by geography.

Teaching bioinformatics through blood, mucus and tearsWatch out for that My Little Pony baby stroller.

Human Genetics working group T2 updateExpanding Galaxy’s ability to analyze protected human data

Careers

Postdoctoral position: multidimensional integration of high throughput sequencing data MeInBio, University of Freiburg, Freiburg, Germany

Postdoctoral position in bioinformatics/data scienceUniversity of Copenhagen, Copenhagen, Denmark

Développeur•euse webL'Institut Français de Bioinformatique, CNRS/l'Institut Pasteur, Paris, France

Ingénieur•e en bioinformatique, développement de workflowsL'Institut Français de Bioinformatique, CNRS, Mésocentre Clermont Auvergn, Cézeaux, France

Sujet stage M2: Développement d’un workflow Galaxy d’analyse de promoteurs chez les plantesLimagrain, Chappes, France

New Platforms

miRGalaxyNGS data analysis focusing on microRNAs and their sequence variants—isomiRs.

MitoLinkAn integrated workflow system to facilitate understanding of genotype-phenotype correlations in cases of mitochondrial dysfunction.

Galaxy IndiaThe Indian community server.

VVVDetermine the composition of a viral population.

SHAMANA user-friendly website for metataxonomic analysis from raw reads to statistical analysis.

IPK BlastBLAST for barley, wheat, and rye. Part of IPK Crop Analysis Tools Suite (CATS).

Recent Pubs

miRGalaxy: Galaxy-Based Framework for Interactive Analysis of microRNA and isomiR Sequencing Data Glogovitis, I., Yahubyan, G., Würdinger, T., Koppers-Lalic, D., & Baev, V. (2021). Cancers, 13(22), 5663.

Laniakea@ReCaS: Exploring the potential of customisable Galaxy on-demand instances as a cloud-based service Tangaro, M. A., Mandreoli, P., Chiara, M., Donvito, G., Antonacci, M., Parisi, A., Bianco, A., Romano, A., Bianchi, D. M., Cangelosi, D., Uva, P., Molineris, I., Nosi, V., Calogero, R. A., Alessandri, L., Pedrini, E., Mordenti, M., Bonetti, E., Sangiorgi, L., … Zambelli, F. (2021). BMC Bioinformatics, 22(15), 544.

Expanding the Galaxy’s reference data VijayKrishna, N., Joshi, J., Coraor, N., Hillman-Jackson, J., Bouvier, D., Beek, M. van den, Eguinoa, I., Coppens, F., Golitsynskiy, S., Stolarczyk, M., Sheffield, N. C., Gladman, S., Cuccuru, G., Grüning, B., Soranzo, N., Rasche, H., Langhorst, B. W., Bernt, M., Fornika, D., … Blankenberg, D. (2021). BioRxiv, 2020.10.09.327114.

Ready-to-use public infrastructure for global SARS-CoV-2 monitoring Maier, W., Bray, S., van den Beek, M., Bouvier, D., Coraor, N., Miladi, M., Singh, B., De Argila, J. R., Baker, D., Roach, N., Gladman, S., Coppens, F., Martin, D. P., Lonie, A., Grüning, B., Kosakovsky Pond, S. L., & Nekrutenko, A. (2021). Nature Biotechnology, 1–2.

GALAXY Workflow for Bacterial Next-Generation Sequencing De Novo Assembly and Annotation Wee, S. K., & Yap, E. P. H. (2021). Current Protocols, 1(9), e242.