Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational research.

  • Accessible: programming experience is not required to easily upload data, run complex tools and workflows, and visualize results.
  • Reproducible: Galaxy captures information so that you don't have to; any user can repeat and understand a complete computational analysis, from tool parameters to the dependency tree.
  • Transparent: Users share and publish their histories, workflows, and visualisations via the web.
  • Community centered: Our inclusive and diverse users (developers, educators, researchers, clinicians, etc.) are empowered to share their findings.

Welcome to the Galaxy Community Hub, where you'll find community curated documentation of all things Galaxy.

News

BY-COVID: A new EU project for pandemic preparednessA new €12 million Horizon Europe funded project which will tackle the data challenges that can hinder effective pandemic response.

October 2021 Galactic NewsIt's all good.

Galaxy Participating in the December 2021 Outreachy Internship CohortGalaxy Community accepted into Outreachy; 2 project proposals open

Hacktoberfest 2021Please join us

Got a minute? Take the GTN survey about Galaxy for training and have your say!Do you use Galaxy for Training? Have your say! Please take a few minutes to let us know about your training experiences.

Events

Analyse avancée de séquencesOct 19. Savoir utiliser l'environnement Galaxy

Galaxy Australia for Proteomics & the MS imaging tool HiT-MAPOct 20. Organised by the Galaxy Proteomics communities in the US, Australia and Europe.

BioCommons and Galaxy ResourcesOct 21.

Galaxy Papercuts CoFest DayOct 21. A community contribution day

The evolution of a Galaxy project for running hybrid eventsOct 22. Gallantries Project: Delivering Galaxy hybrid events, and evolving with the pandemic

Recent Videos

Fast, scalable, free, & user-friendly Galaxy workflows for reference genome assemblyThe latest version of VGP's pipeline has been ported to Galaxy.

Galaxy for AnVIL Cloud Cost AnalysisAugust 19 Galaxy Developer Round Table call covering AWS, GCP, and Jetstream

GCC2021 PresentationsMissed GCC2021? You can still catch over 50 presentations.

GCC2021 Training Week VideosAlmost 200 videos from the Science, Developer, and Admin tracks

Collections 101Got complex experiments? Use Collections.

Blog

Sunsetting the CloudLaunch serviceThere are now better alternatives to using Galaxy on the cloud

SARS-CoV-2 analysis training with Galaxy: a perspective from AfricaThe switch to online bioinformatics training forced by the COVID-19 pandemic has opened spaces for collaboration in ways that were previously limited by geography.

Teaching bioinformatics through blood, mucus and tearsWatch out for that My Little Pony baby stroller.

Human Genetics working group T2 updateExpanding Galaxy’s ability to analyze protected human data

The New Galaxy Community Hub

Careers

Postdoctoral researcher Biosciences - RNASeq investigating host-pathogen interactions in farm animalsSciensano, Brussels, Belgium

Development Scientist - BioinformaticsNew England BioLabs, Ipswich, Massachusetts, United States

Computational BiologistGalaxyWorks, Baltimore (or remote), Maryland, United States

Postdoctoral FellowshipsBlankenberg Lab, Cleveland Clinic Lerner Research Institute, Cleveland, Ohio, United States

Research Associate in Biomedical Data ScienceDepartment of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore. Maryland, United States

New Platforms

MitoLinkAn integrated workflow system to facilitate understanding of genotype-phenotype correlations in cases of mitochondrial dysfunction.

Galaxy IndiaThe Indian community server.

VVVDetermine the composition of a viral population.

SHAMANA user-friendly website for metataxonomic analysis from raw reads to statistical analysis.

IPK BlastBLAST for barley, wheat, and rye. Part of IPK Crop Analysis Tools Suite (CATS).

Recent Pubs

Expanding the Galaxy’s reference data

VijayKrishna, N., Joshi, J., Coraor, N., Hillman-Jackson, J., Bouvier, D., Beek, M. van den, Eguinoa, I., Coppens, F., Golitsynskiy, S., Stolarczyk, M., Sheffield, N. C., Gladman, S., Cuccuru, G., Grüning, B., Soranzo, N., Rasche, H., Langhorst, B. W., Bernt, M., Fornika, D., … Blankenberg, D. (2021). BioRxiv, 2020.10.09.327114.

Ready-to-use public infrastructure for global SARS-CoV-2 monitoring

Maier, W., Bray, S., van den Beek, M., Bouvier, D., Coraor, N., Miladi, M., Singh, B., De Argila, J. R., Baker, D., Roach, N., Gladman, S., Coppens, F., Martin, D. P., Lonie, A., Grüning, B., Kosakovsky Pond, S. L., & Nekrutenko, A. (2021). Nature Biotechnology, 1–2.

GALAXY Workflow for Bacterial Next-Generation Sequencing De Novo Assembly and Annotation

Wee, S. K., & Yap, E. P. H. (2021). Current Protocols, 1(9), e242.

A SARS-CoV-2 sequence submission tool for the European Nucleotide Archive

Roncoroni, M., Droesbeke, B., Eguinoa, I., De Ruyck, K., D’Anna, F., Yusuf, D., Grüning, B., Backofen, R., & Coppens, F. (2021). Bioinformatics, btab421.

Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine

Gu, Q., Kumar, A., Bray, S., Creason, A., Khanteymoori, A., Jalili, V., Grüning, B., & Goecks, J. (2021). PLOS Computational Biology, 17(6), e1009014.