Welcome to the Galaxy Community Hub
The meeting point where you can find curated documentation for all things Galaxy
Galaxy is an open-source platform for FAIR data analysis that enables users to:
- use tools from various domains (that can be plugged into workflows) through its graphical web interface.
- run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
- manage data by sharing and publishing results, workflows, and visualizations.
- ensure reproducibility by capturing the necessary information to repeat and understand data analyses.
The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.
Announcements
Galaxy for
SCIENTISTS
Galaxy for
TRAINERS
Galaxy for
TOOL AUTHORS
Galaxy for
DEVELOPERS
Galaxy for
ADMINS
News
GCC2022 Call for BoFs – Birds of feather flock together at GCC
Towards a sustainable storage, enabling co-financing of public infrastructure
Galaxy Release 22.01 – Colour Selector, Robust File Uploads, Beta History Improvements, FastAPI, Galaxy Vault & much more!
GTN Smörgåsbord 2: 14-18 March – A second Smörgåsbord with even more Galaxy Training
How does the GTN stay FAIR and Collaborative? – Find out how contributing simple markdown tutorials can result in fantastically FAIR training.
Events
iRODS as an Object Store for the Galaxy Platform – Jul 5. iRODS 2022 User Group Meeting
Galaxy Community Call: JupyterLab interactive tool – Jul 7. A forum to share updates and discuss community-wide topics
2022 Galaxy Community Conference (GCC2022) – Jul 16. The annual gathering of the Galaxy Community
Making sense of genomic data: COVID-19 web-based bioinformatics – Jul 25. This course will introduce you to SARS-CoV-2 bioinformatics pipelines. Learn how to use the web-based tool Galaxy for bioinformatics analyses, including how to input and process data, build a pipeline, and use existing workflows.
Galaxy Community Call: Machine Learning Toolkit in Galaxy – Aug 4. A forum to share updates and discuss community-wide topics
Recent Videos
How Galaxy Imaging makes cloud-based image analysis possible – Presented at the Euro-BioImaging Virtual Pub
How to launch Galaxy workflows from Dockstore – Dockstore and Galaxy are now integrated
Galaxy 21.09 Release Highlights – New Toolbox; Change Datatype + DBkey; Remote Files Enhancements
Image analysis in Galaxy - pain points and lessons learnt – October 28 Galaxy Developer Round Table
Fast, scalable, free, & user-friendly Galaxy workflows for reference genome assembly – The latest version of VGP's pipeline has been ported to Galaxy.
Blog
Defining Key Concepts in Galaxy Well-being and Mental Health Project – Second blog post presenting the Outreachy project on Mental Health
Galaxy Well-being and Mental Health Project – First blog post presenting the Outreachy project on Mental Health
Welcome to our 3 new Outreachy interns! – From Galaxy dev, Galaxy Climate to Galaxy Well-being and mental health.
A guide to GCC2022 – Where Galaxy meets in 2022!
Try out Terra’s updated Interactive Analysis interface – The redesigned interface provides access to interactive analysis applications supported by Cloud Environments, i.e. Jupyter Notebook, RStudio and Galaxy
Careers
Scientific software developer – RECETOX, Brno, Czechia
DevOps Engineer – Department of Biology, Johns Hopkins University, Baltimore, Maryland, United States
Community Director for the Global Galaxy Project – Department of Biology, Johns Hopkins University, Baltimore, Maryland, United States
UI/UX Engineer – University of Freiburg, Freiburg, Germany
Bioinformatician – Pfizer, Cambridge, Massachusetts, United States
New Platforms
Galaxy@AuBi – Standard tools for DNA/RNA analysis and additional ones on project demands.
miRGalaxy – NGS data analysis focusing on microRNAs and their sequence variants—isomiRs.
MitoLink – An integrated workflow system to facilitate understanding of genotype-phenotype correlations in cases of mitochondrial dysfunction.
Galaxy India – The Indian community server.
VVV – Determine the composition of a viral population.
SHAMAN – A user-friendly website for metataxonomic analysis from raw reads to statistical analysis.
IPK Blast – BLAST for barley, wheat, and rye. Part of IPK Crop Analysis Tools Suite (CATS).
Recent Publications
Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function – Martin, D.P., Lytras, S., Lucaci, A.G., Maier, Gruning, B. ... Kosakovsky Pond S.L. (2022). bioRxiv.
VectorBase.org updates: bioinformatic resources for invertebrate vectors of human pathogens and related organisms – Giraldo-Calderón, G. I., Harb, O.S., Kelly S.A., and Rund S. SC, Roos D.S., McDowell M.A. (2022). Current Opinion in Insect Science.
Galaxy workflows for fragment-based virtual screening: A case study on the SARS-CoV-2 main protease – Bray, S., Dudgeon, T., Skyner, R., Backofen, R., Grüning, B., & Delft, F. von. (2021). ChemRxiv.
Galaxy Is a Suitable Bioinformatics Platform for the Molecular Diagnosis of Human Genetic Disorders Using High-Throughput Sequencing Data Analysis. Five Years of Experience in a Clinical Laboratory – Chappell, K., Francou, B., Habib, C., Huby, T., Leoni, M., … Bouligand, J. (2021). Clinical Chemistry, hvab220.
MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging – Schapiro, D., Sokolov, A., Yapp, C., Chen, Y.-A., Muhlich, J. L., … Sorger, P. K. (2021). Nature Methods, 1–5.
miRGalaxy: Galaxy-Based Framework for Interactive Analysis of microRNA and isomiR Sequencing Data – Glogovitis, I., Yahubyan, G., Würdinger, T., Koppers-Lalic, D., & Baev, V. (2021). Cancers, 13(22), 5663.
Laniakea@ReCaS: Exploring the potential of customisable Galaxy on-demand instances as a cloud-based service – Tangaro, M. A., Mandreoli, P., Chiara, M., Donvito, G., Antonacci, M., … Zambelli, F. (2021). BMC Bioinformatics, 22(15), 544.