Galaxy is an open-source platform for FAIR data analysis that enables users to:

  • Use tools from various domains (that can be plugged into workflows) through its graphical web interface.
  • Run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
  • Manage data by sharing and publishing results, workflows, and visualizations.
  • Ensure reproducibility by capturing the necessary information to repeat and understand data analyses.

The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.

The European Galaxy Days

News

Galaxy Release 22.05

New History, Storage Dashboard, Bulk History Operations, Deferred Datasets, OpenAPI & much more!

The European Galaxy Team is hiring!

The Freiburg Galaxy Team is looking for a Systems Engineer/DevOps Engineer!

Galaxy Governance Status Update

Updates about the different governance bodies

New Paper "Creating a good learning and sharing environment for bioinformatics"

Tomas Klingström and J.I. Ohlsson have published a paper about the use of BioContainers, Galaxy, and the GTN for bioinformatics researchers.

GCC2022: Registration open for Webinar mode

For those that won't attend in person, the GCC Organizing Committee is happy to announce a virtual webinar-like option

Events

Oct 3 - Oct 7Cloud Computing Workshop

Online video tutorials about the use of cloud computing resources for MS-based proteomics.

Oct 3 - Oct 7European Galaxy Days (EGD)

European Galaxy Community meeting in Autumn

Oct 13Galaxy Community Call: Muon Science community

A forum to share updates and discuss community-wide topics

Oct 27Galaxy Community Call: Galaxy Release Process: Overview and Coming Changes

A forum to share updates and discuss community-wide topics

Recent Videos

How Galaxy Imaging makes cloud-based image analysis possible

Presented at the Euro-BioImaging Virtual Pub

How to launch Galaxy workflows from Dockstore

Dockstore and Galaxy are now integrated

Galaxy 21.09 Release Highlights

New Toolbox; Change Datatype + DBkey; Remote Files Enhancements

Image analysis in Galaxy - pain points and lessons learnt

October 28 Galaxy Developer Round Table

Fast, scalable, free, & user-friendly Galaxy workflows for reference genome assembly

The latest version of VGP's pipeline has been ported to Galaxy.

Blog

Mental Health Assessment Tools

Tenth blog post presenting the Outreachy project on Mental Health

Why we should support the underrepresented communities

Ninth blog post presenting the Outreachy project on Mental Health

Galaxy + Nextflow at CFSAN, FDA.

How Nextflow pipelines are integrated into Galaxy project at CFSAN, FDA.

Galaxy Well-being and Mental Health Project Survey Result Highlights

Eighth blog post presenting the Outreachy project on Mental Health

Galaxy Well-being and Mental Health Project GCC2022 BoF Session Highlights

Seventh blog post presenting the Outreachy project on Mental Health

Careers

Postdoctoral Scholar

Stratton Lab, Dept. of Physiology & Cell Biology, Davis Heart and Lung Research Institute, Columbus, Ohio, United States

Community Director for the Global Galaxy Project

Department of Biology, Johns Hopkins University, Baltimore, Maryland, United States

Bioinformatician

Pfizer, Cambridge, Massachusetts, United States

Research Associate in Biomedical Data Science

Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore. Maryland, United States

New Platforms

Galaxy@AuBi

Standard tools for DNA/RNA analysis and additional ones on project demands.

miRGalaxy

NGS data analysis focusing on microRNAs and their sequence variants—isomiRs.

MitoLink

An integrated workflow system to facilitate understanding of genotype-phenotype correlations in cases of mitochondrial dysfunction.

Galaxy India

The Indian community server.

VVV

Determine the composition of a viral population.

SHAMAN

A user-friendly website for metataxonomic analysis from raw reads to statistical analysis.

IPK Blast

BLAST for barley, wheat, and rye. Part of IPK Crop Analysis Tools Suite (CATS).

Recent Publications

Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function

Martin, D.P., Lytras, S., Lucaci, A.G., Maier, Gruning, B. ... Kosakovsky Pond S.L. (2022). bioRxiv.

VectorBase.org updates: bioinformatic resources for invertebrate vectors of human pathogens and related organisms

Giraldo-Calderón, G. I., Harb, O.S., Kelly S.A., and Rund S. SC, Roos D.S., McDowell M.A. (2022). Current Opinion in Insect Science.

Galaxy workflows for fragment-based virtual screening: A case study on the SARS-CoV-2 main protease

Bray, S., Dudgeon, T., Skyner, R., Backofen, R., Grüning, B., & Delft, F. von. (2021). ChemRxiv.

MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging

Schapiro, D., Sokolov, A., Yapp, C., Chen, Y.-A., Muhlich, J. L., … Sorger, P. K. (2021). Nature Methods, 1–5.

miRGalaxy: Galaxy-Based Framework for Interactive Analysis of microRNA and isomiR Sequencing Data

Glogovitis, I., Yahubyan, G., Würdinger, T., Koppers-Lalic, D., & Baev, V. (2021). Cancers, 13(22), 5663.

Laniakea@ReCaS: Exploring the potential of customisable Galaxy on-demand instances as a cloud-based service

Tangaro, M. A., Mandreoli, P., Chiara, M., Donvito, G., Antonacci, M., … Zambelli, F. (2021). BMC Bioinformatics, 22(15), 544.