Welcome to the Galaxy Community Hub
The meeting point where you can find curated documentation for all things Galaxy
Galaxy is an open-source platform for FAIR data analysis that enables users to:
- Use tools from various domains (that can be plugged into workflows) through its graphical web interface.
- Run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
- Manage data by sharing and publishing results, workflows, and visualizations.
- Ensure reproducibility by capturing the necessary information to repeat and understand data analyses.
The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.
Galaxy for
SCIENTISTS
Galaxy for
TRAINERS
Galaxy for
TOOL AUTHORS
Galaxy for
DEVELOPERS
Galaxy for
ADMINS
News
Galaxy Governance Status Update
Updates about the different governance bodies
Birds of feather flock together at GCC
Colour Selector, Robust File Uploads, Beta History Improvements, FastAPI, Galaxy Vault & much more!
GTN Smörgåsbord 2: 14-18 March
A second Smörgåsbord with even more Galaxy Training
Events
Jul 25 - Aug 14Making sense of genomic data: COVID-19 web-based bioinformatics
This course will introduce you to SARS-CoV-2 bioinformatics pipelines. Learn how to use the web-based tool Galaxy for bioinformatics analyses, including how to input and process data, build a pipeline, and use existing workflows.
Aug 18Galaxy Community Call: Outcomes of the Outreachy projects
A forum to share updates and discuss community-wide topics
Aug 31 - Sep 2Genome Assembly and Annotation 2022
A 3-day training course on bioinformatics methods for de novo assembly and structural and functional annotation of genomes using short (Illumina) and long reads (PacBio / Oxford Nanopore) sequencing technologies (will be run in French).
Sep 1Galaxy Community Call: Galaxy Release Process: Overview and Coming Changes
A forum to share updates and discuss community-wide topics
Sep 15Galaxy Community Call: Testing infrastructure for Galaxy's data model and database migrations
A forum to share updates and discuss community-wide topics
Recent Videos
How Galaxy Imaging makes cloud-based image analysis possible
Presented at the Euro-BioImaging Virtual Pub
How to launch Galaxy workflows from Dockstore
Dockstore and Galaxy are now integrated
Galaxy 21.09 Release Highlights
New Toolbox; Change Datatype + DBkey; Remote Files Enhancements
Image analysis in Galaxy - pain points and lessons learnt
October 28 Galaxy Developer Round Table
Fast, scalable, free, & user-friendly Galaxy workflows for reference genome assembly
The latest version of VGP's pipeline has been ported to Galaxy.
Blog
Galaxy Well-being and Mental Health Project Survey Result Highlights
Eighth blog post presenting the Outreachy project on Mental Health
Galaxy Well-being and Mental Health Project GCC2022 BoF Session Highlights
Seventh blog post presenting the Outreachy project on Mental Health
Galaxy climate to support local/regional initiatives and concrete actions to fight climate change
Second blog post presenting the Outreachy project on Galaxy Climate
Creating a Mentally Healthy Work Environment
Sixth blog post presenting the Outreachy project on Mental Health
The Importance of Mental Health and its Risk Factors
Fifth blog post presenting the Outreachy project on Mental Health
Careers
Bacon Lab, School of Life, Health & Chemical Sciences, The Open University, United Kingdom. Apply by Sep 23
Stratton Lab, Dept. of Physiology & Cell Biology, Davis Heart and Lung Research Institute, Columbus, Ohio, United States
Community Director for the Global Galaxy Project
Department of Biology, Johns Hopkins University, Baltimore, Maryland, United States
Pfizer, Cambridge, Massachusetts, United States
Research Associate in Biomedical Data Science
Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore. Maryland, United States
New Platforms
Standard tools for DNA/RNA analysis and additional ones on project demands.
NGS data analysis focusing on microRNAs and their sequence variants—isomiRs.
An integrated workflow system to facilitate understanding of genotype-phenotype correlations in cases of mitochondrial dysfunction.
The Indian community server.
Determine the composition of a viral population.
A user-friendly website for metataxonomic analysis from raw reads to statistical analysis.
BLAST for barley, wheat, and rye. Part of IPK Crop Analysis Tools Suite (CATS).
Recent Publications
Martin, D.P., Lytras, S., Lucaci, A.G., Maier, Gruning, B. ... Kosakovsky Pond S.L. (2022). bioRxiv.
Giraldo-Calderón, G. I., Harb, O.S., Kelly S.A., and Rund S. SC, Roos D.S., McDowell M.A. (2022). Current Opinion in Insect Science.
Galaxy workflows for fragment-based virtual screening: A case study on the SARS-CoV-2 main protease
Bray, S., Dudgeon, T., Skyner, R., Backofen, R., Grüning, B., & Delft, F. von. (2021). ChemRxiv.
Chappell, K., Francou, B., Habib, C., Huby, T., Leoni, M., … Bouligand, J. (2021). Clinical Chemistry, hvab220.
MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging
Schapiro, D., Sokolov, A., Yapp, C., Chen, Y.-A., Muhlich, J. L., … Sorger, P. K. (2021). Nature Methods, 1–5.
miRGalaxy: Galaxy-Based Framework for Interactive Analysis of microRNA and isomiR Sequencing Data
Glogovitis, I., Yahubyan, G., Würdinger, T., Koppers-Lalic, D., & Baev, V. (2021). Cancers, 13(22), 5663.
Tangaro, M. A., Mandreoli, P., Chiara, M., Donvito, G., Antonacci, M., … Zambelli, F. (2021). BMC Bioinformatics, 22(15), 544.