Galaxy is an open-source platform for FAIR data analysis that enables users to:

  • Use tools from various domains (that can be plugged into workflows) through its graphical web interface.
  • Run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
  • Manage data by sharing and publishing results, workflows, and visualizations.
  • Ensure reproducibility by capturing the necessary information to repeat and understand data analyses.

The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.

GCC2023 coming soon

News

Simple and data privacy-aware publishing of genomic variance data from Galaxy to the Beacon project

Galaxy has gained a Beacon integration that enables users to publish genetic variance data conveniently via Beacon project

GPU-enabled JupyterLab enables interactive AI use-cases in Galaxy

Democratising GPU infrastructures by providing accelerated JuypterLab instances via Galaxy and combining them with HPC workflows

Accessibility in Galaxy 23.0 and beyond

Accessibility improvement Highlights for the upcoming 23.0 release, and a few words on accessibility in general

New Paper "Galaxy Training: A powerful framework for teaching!"

Our new paper about the Galaxy Training Network has been published this week in Plos Computational Biology.

Events

May 22 - May 26GTN Smörgåsbord 2023

We are happy to announce that the next edition of the GTN Smörgåsbord training event will take place on May 22-26, 2023! It will once again be free, online, self-paced, and choose-your-own-adventure style. It will feature all the content of previous editions, plus lots more!

Feb 6 - Feb 10Single-cell RNA-seq analysis using Galaxy

Participants will be guided through the droplet-based scRNA-seq analysis pipelines from raw reads to trajectories.

Feb 9Galaxy Community Call: 23.0 Release Testing Outcomes

A forum to share updates and discuss community-wide topics

Feb 9microGalaxy Community Call

microGalaxy is a communities of practice focusing on microbial analysis with Galaxy

Mar 2Galaxy Community Call

A forum to share updates and discuss community-wide topics

Recent Videos

How Galaxy Imaging makes cloud-based image analysis possible

Presented at the Euro-BioImaging Virtual Pub

How to launch Galaxy workflows from Dockstore

Dockstore and Galaxy are now integrated

Galaxy 21.09 Release Highlights

New Toolbox; Change Datatype + DBkey; Remote Files Enhancements

Image analysis in Galaxy - pain points and lessons learnt

October 28 Galaxy Developer Round Table

Fast, scalable, free, & user-friendly Galaxy workflows for reference genome assembly

The latest version of VGP's pipeline has been ported to Galaxy.

Blog

Mental Health Assessment Tools

Tenth blog post presenting the Outreachy project on Mental Health

Why we should support the underrepresented communities

Ninth blog post presenting the Outreachy project on Mental Health

Galaxy + Nextflow at CFSAN, FDA.

How Nextflow pipelines are integrated into Galaxy project at CFSAN, FDA.

Galaxy Well-being and Mental Health Project Survey Result Highlights

Eighth blog post presenting the Outreachy project on Mental Health

Careers

Postdoctoral Scholar

Stratton Lab, Dept. of Physiology & Cell Biology, Davis Heart and Lung Research Institute, Columbus, Ohio, United States

Bioinformatician

Pfizer, Cambridge, Massachusetts, United States

Research Associate in Biomedical Data Science

Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore. Maryland, United States

New Platforms

Galaxy@AuBi

Standard tools for DNA/RNA analysis and additional ones on project demands.

miRGalaxy

NGS data analysis focusing on microRNAs and their sequence variants—isomiRs.

MitoLink

An integrated workflow system to facilitate understanding of genotype-phenotype correlations in cases of mitochondrial dysfunction.

Galaxy India

The Indian community server.

VVV

Determine the composition of a viral population.

SHAMAN

A user-friendly website for metataxonomic analysis from raw reads to statistical analysis.

IPK Blast

BLAST for barley, wheat, and rye. Part of IPK Crop Analysis Tools Suite (CATS).

Recent Publications

Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function

Martin, D.P., Lytras, S., Lucaci, A.G., Maier, Gruning, B. ... Kosakovsky Pond S.L. (2022). bioRxiv.

VectorBase.org updates: bioinformatic resources for invertebrate vectors of human pathogens and related organisms

Giraldo-Calderón, G. I., Harb, O.S., Kelly S.A., and Rund S. SC, Roos D.S., McDowell M.A. (2022). Current Opinion in Insect Science.

Galaxy workflows for fragment-based virtual screening: A case study on the SARS-CoV-2 main protease

Bray, S., Dudgeon, T., Skyner, R., Backofen, R., Grüning, B., & Delft, F. von. (2021). ChemRxiv.

MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging

Schapiro, D., Sokolov, A., Yapp, C., Chen, Y.-A., Muhlich, J. L., … Sorger, P. K. (2021). Nature Methods, 1–5.

miRGalaxy: Galaxy-Based Framework for Interactive Analysis of microRNA and isomiR Sequencing Data

Glogovitis, I., Yahubyan, G., Würdinger, T., Koppers-Lalic, D., & Baev, V. (2021). Cancers, 13(22), 5663.

Laniakea@ReCaS: Exploring the potential of customisable Galaxy on-demand instances as a cloud-based service

Tangaro, M. A., Mandreoli, P., Chiara, M., Donvito, G., Antonacci, M., … Zambelli, F. (2021). BMC Bioinformatics, 22(15), 544.