Welcome to the Galaxy Community Hub
The meeting point where you can find curated documentation for all things Galaxy
Galaxy is an open-source platform for FAIR data analysis that enables users to:
- Use tools from various domains (that can be plugged into workflows) through its graphical web interface.
- Run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
- Manage data by sharing and publishing results, workflows, and visualizations.
- Ensure reproducibility by capturing the necessary information to repeat and understand data analyses.
The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.
Using Galaxy & TIaaS to teach hands-on genome assembly and annotation
On Feb. 27 to Mar. 3, we (several VGP-associated instructors) used the UseGalaxy EU infrastructure to aid in teaching an online Physalia course of 40+ students how to assemble and annotate their own genome from their browser.
Evaluation of the current usage and future needs of Galaxy for microbial data analysis - We Need Your Help!
The microGalaxy community of practice would like to learn more about use-cases where Galaxy was beneficial, and also the barriers that prevent researchers from using Galaxy. The aim is to collectively find solutions to improve user experience and reduce barriers. To this end, we are launching a survey to reach out to, and learn from, the microbial research community.
Effortlessly navigate your Galaxy history with enhanced search options
Data searchability in the Galaxy History panel has been taken to new levels with the advanced search options that allow users to not only find items with more ease, but also find relations within items in their history.
Enjoy a much faster user interface
Following up on our modernization efforts, we now introduce a single top-router written in Vue, which brings all our Vue components together in a seamless user experience, dramatically reducing the number of required page reloads when navigating the Galaxy user interface.
We launched the Galaxy Mentor Network one year ago with the idea to onboard new members in the community. Now, one year later, we realize that we failed. We still believe in the power that the Galaxy Mentor Network, and, in that spirit, we would like to relaunch the Galaxy Mentor Network with a new matching process.
May 22 - May 26GTN Smörgåsbord 2023
We are happy to announce that the next edition of the GTN Smörgåsbord training event will take place on May 22-26, 2023! It will once again be free, online, self-paced, and choose-your-own-adventure style. It will feature all the content of previous editions, plus lots more!
Apr 13Galaxy Community Call: AnVIL Project
A forum to share updates and discuss community-wide topics
Apr 17 - Apr 212023 Galaxy Admin Training
The ins and outs of setting up your own production quality Galaxy server
May 4Galaxy Community Call: Galaxy for Cancer
A forum to share updates and discuss community-wide topics
May 4microGalaxy Community Call
microGalaxy is a communities of practice focusing on microbial data analysis with Galaxy
How Galaxy Imaging makes cloud-based image analysis possible
Presented at the Euro-BioImaging Virtual Pub
How to launch Galaxy workflows from Dockstore
Dockstore and Galaxy are now integrated
Galaxy 21.09 Release Highlights
New Toolbox; Change Datatype + DBkey; Remote Files Enhancements
Image analysis in Galaxy - pain points and lessons learnt
October 28 Galaxy Developer Round Table
Fast, scalable, free, & user-friendly Galaxy workflows for reference genome assembly
The latest version of VGP's pipeline has been ported to Galaxy.
Mental Health Assessment Tools
Tenth blog post presenting the Outreachy project on Mental Health
Why we should support the underrepresented communities
Ninth blog post presenting the Outreachy project on Mental Health
Galaxy + Nextflow at CFSAN, FDA.
How Nextflow pipelines are integrated into Galaxy project at CFSAN, FDA.
Galaxy Well-being and Mental Health Project Survey Result Highlights
Eighth blog post presenting the Outreachy project on Mental Health
Research Associate in Biomedical Data Science
Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore. Maryland, United States
Standard tools for DNA/RNA analysis and additional ones on project demands.
NGS data analysis focusing on microRNAs and their sequence variants—isomiRs.
An integrated workflow system to facilitate understanding of genotype-phenotype correlations in cases of mitochondrial dysfunction.
The Indian community server.
Determine the composition of a viral population.
A user-friendly website for metataxonomic analysis from raw reads to statistical analysis.
BLAST for barley, wheat, and rye. Part of IPK Crop Analysis Tools Suite (CATS).
Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function
Martin, D.P., Lytras, S., Lucaci, A.G., Maier, Gruning, B. ... Kosakovsky Pond S.L. (2022). bioRxiv.
VectorBase.org updates: bioinformatic resources for invertebrate vectors of human pathogens and related organisms
Giraldo-Calderón, G. I., Harb, O.S., Kelly S.A., and Rund S. SC, Roos D.S., McDowell M.A. (2022). Current Opinion in Insect Science.
Galaxy workflows for fragment-based virtual screening: A case study on the SARS-CoV-2 main protease
Bray, S., Dudgeon, T., Skyner, R., Backofen, R., Grüning, B., & Delft, F. von. (2021). ChemRxiv.
Galaxy Is a Suitable Bioinformatics Platform for the Molecular Diagnosis of Human Genetic Disorders Using High-Throughput Sequencing Data Analysis. Five Years of Experience in a Clinical Laboratory
Chappell, K., Francou, B., Habib, C., Huby, T., Leoni, M., … Bouligand, J. (2021). Clinical Chemistry, hvab220.
MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging
Schapiro, D., Sokolov, A., Yapp, C., Chen, Y.-A., Muhlich, J. L., … Sorger, P. K. (2021). Nature Methods, 1–5.
miRGalaxy: Galaxy-Based Framework for Interactive Analysis of microRNA and isomiR Sequencing Data
Glogovitis, I., Yahubyan, G., Würdinger, T., Koppers-Lalic, D., & Baev, V. (2021). Cancers, 13(22), 5663.
Laniakea@ReCaS: Exploring the potential of customisable Galaxy on-demand instances as a cloud-based service
Tangaro, M. A., Mandreoli, P., Chiara, M., Donvito, G., Antonacci, M., … Zambelli, F. (2021). BMC Bioinformatics, 22(15), 544.