Galaxy Demo / Training Day, Tuesday, September 30th, Bern



Demo / Training Day
2nd Swiss Workshop
German Developer Day
## Content The Demo/Training day will focus on empowering biologists to deploy and maintain their own Galaxy servers. Almost everything covered will be done from a web browser, without using a shell (command line) interface, or scripting. The workshop is also appropriate for bioinformaticians. Topics covered: Introduction to Galaxy Galaxy datatypes, histories, datasets, tools Installing and administering your own Galaxy on the cloud Simple text manipulations, a simple workflow Using the ToolShed NGS-analaysis: RNA-seq and/or Chip-Seq * Visualizations ## Preliminary Schedule | Time | Speaker | Title | Type | Slides | | ---- | -------- | ------ | ----- | ------- | | 9:15 - 9:30 | ARRIVAL | | 9:30 - 9:40 | Hans-Rudolf Hotz (FMI), Björn Grüning (University of Freiburg) | welcome | | pdf | | 9:40 - 9:50 | Hans-Rudolf Hotz (FMI) | Galaxy Introduction | demo | pdf | | 9:50 - 10:30 | Hans-Rudolf Hotz (FMI) | datatypes, histories, datasets, tools, data sharing | hands-on | | | 10:30 - 11:00 | coffee Break | | 11:00 - 12:00 | Hans-Rudolf Hotz (FMI) | simple text manipulations, workflows | hands-on | | | 12:00 - 13:30 | Lunch Break (lunch will be at 12:15) | | 13:30 - 14:10 | Dannon Baker (Galaxy Project) | installing and administering your own Galaxy on the cloud | hands-on | | | 14:10 - 14:40 | Björn Grüning (University of Freiburg) | toolshed | hands-on | | | 14:40 - 15:00| coffee Break | | 15:00 - 15:30 | Björn Grüning (University of Freiburg) | NGS-analaysis: a Chip-Seq example | hands-on | | | 15:30 - 16:00 | Dannon Baker (Galaxy Project) | visualizations | hands-on | | | 16:00 - 16:01 | Hans-Rudolf Hotz (FMI), Björn Grüning (University of Freiburg) | concluding remarks | | | | 16:01 - 16:15 | DEPARTURE (....and going to the pub) | This schedule will most likely change. It will be adapted according to the progress we make during the day ## Location The training day will be held in the UniS-Building (room: A -119) of the Universität Bern, which is a 5 minutes walk away from the main train station. ## Registration Registration is now closed. Please contact Hans-Rudolf Hotz or Björn Grüning if you want your name to be put on the waiting list. There is a good chance, we can still accommodate you.
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Support

This workshop is generously supported by SyBIT / SystemsX.ch