Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational research.

  • Accessible: programming experience is not required to easily upload data, run complex tools and workflows, and visualize results.
  • Reproducible: Galaxy captures information so that you don't have to; any user can repeat and understand a complete computational analysis, from tool parameters to the dependency tree.
  • Transparent: Users share and publish their histories, workflows, and visualisations via the web.
  • Community centered: Our inclusive and diverse users (developers, educators, researchers, clinicians, etc.) are empowered to share their findings.

Welcome to the Galaxy Community Hub, where you'll find community curated documentation of all things Galaxy.

News

September 2021 Galactic News

Annual reports 2020: ELIXIR and IFB The ELIXIR and IFB annual reports for 2020 are out, and they highlight Galaxy work throughout.

JXTX Foundation Awards Scholarships for Genome Informatics 2021 Awardees will be paired with senior researchers in the field prior to the conference

Outcomes of the workshop "SARS-CoV-2 Data Analysis and Monitoring with Galaxy" Building capacity, both in the analysis and data management sides of SARS-CoV-2

Training Infrastructure as a Service (TIaaS) is sponsored by EOSC-Life Anyone providing training is eligible to request the use of this service.

Events

Fast, scalable, free, & user-friendly Galaxy workflows for reference genome assembly Sep 27. The latest version of VGP's pipeline has been ported to Galaxy.

RNA-Seq Analysis Using Galaxy Sep 28. from data preparation to statistical testing, visualization and functional analysis

Galaxy Developer Roundtable Sep 30. Volunteer to lead the discussion

Hybrid de novo genome assembly Oct 7. Create and assess genome assemblies from Illumina and Nanopore reads. Applications due 29 September.

Workflow4Experimenters (W4E) international course 2021 Oct 11. Using Galaxy and the Workflow4metabolomics infrastructure to analyse your own metabolomics data. Preregister by 15 May.

  Recent Videos

Galaxy for AnVIL Cloud Cost Analysis - August 19 Galaxy Developer Round Table call covering AWS, GCP, and Jetstream

GCC2021 Presentations - Missed GCC2021? You can still catch over 50 presentations.

GCC2021 Training Week Videos - Almost 200 videos from the Science, Developer and Admin tracks.

Collections 101 - Got complex experiments? Use Collections.

Galaxy 101 (updated) - An introduction to basic Galaxy functionality

Restricting the Galaxy Tool Panel - July 22 Galaxy Developer Round Table call

Blog

The New Galaxy Community Hub

Cancer informatics working group T2 update CI-WG Updates from the tertile

Galaxy 21.05 upgrade and cluster_venv Using a specific venv for running on the cluster that is configured on the cluster

SANBI provides leadership at Galaxy Community Conference Highlights of GCC2021 included talks on Galaxy tools for analysing SARS-CoV-2, the virus that causes COVID-19 and a number of talks on the use of Galaxy in a pathogen genomics and public health context.

New high memory computers fast-track insights into large genomes Galaxy Australia’s new high memory servers have delivered an impressive leap forward for scientists with large datasets and computationally-intensive analyses.

Careers

Bioinformatician GSK, Siena, Italy

Development Scientist - Bioinformatics New England BioLabs, Ipswich, Massachusetts, United States

Computational Biologist GalaxyWorks, Baltimore (or remote), Maryland, United States

Postdoctoral Fellowships Blankenberg Lab, Cleveland Clinic Lerner Research Institute, Cleveland, Ohio, United States

Research Associate in Biomedical Data Science Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore. Maryland, United States

New Platforms

Galaxy India – The Indian community server.

VVV – Determine the composition of a viral population.

SHAMAN – A user-friendly website for metataxonomic analysis from raw reads to statistical analysis.

IPK Blast – BLAST for barley, wheat, and rye. Part of IPK Crop Analysis Tools Suite (CATS).

immuneML – Machine learning-based analysis and classification of adaptive immune receptors and repertoires (AIRR).

Recent Pubs

GALAXY Workflow for Bacterial Next-Generation Sequencing De Novo Assembly and Annotation - Wee, S. K., & Yap, E. P. H. (2021). Current Protocols, 1(9), e242.

A SARS-CoV-2 sequence submission tool for the European Nucleotide Archive - Roncoroni, M., Droesbeke, B., Eguinoa, I., De Ruyck, K., D’Anna, F., Yusuf, D., Grüning, B., Backofen, R., & Coppens, F. (2021). Bioinformatics, btab421.

Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine - Gu, Q., Kumar, A., Bray, S., Creason, A., Khanteymoori, A., Jalili, V., Grüning, B., & Goecks, J. (2021). PLOS Computational Biology, 17(6), e1009014.

Fostering accessible online education using Galaxy as an e-learning platform - Serrano-Solano, B., Föll, M. C., Gallardo-Alba, C., Erxleben, A., Rasche, H., Hiltemann, S., Fahrner, M., Dunning, M. J., Schulz, M. H., Scholtz, B., Clements, D., Nekrutenko, A., Batut, B., & Grüning, B. A. (2021). PLOS Computational Biology, 17(5), e1008923.

A constructivist-based proposal for bioinformatics teaching practices during lockdown - Gallardo-Alba, C., Grüning, B., & Serrano-Solano, B. (2021). PLOS Computational Biology, 17(5), e1008922.