Welcome to the Galaxy Community Hub
The meeting point where you can find curated documentation for all things Galaxy
Galaxy is an open-source platform for FAIR data analysis that enables users to:
- Use tools from various domains (that can be plugged into workflows) through its graphical web interface.
- Run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
- Manage data by sharing and publishing results, workflows, and visualizations.
- Ensure reproducibility by capturing the necessary information to repeat and understand data analyses.
The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.
Galaxy for
SCIENTISTS
Galaxy for
TRAINERS
Galaxy for
TOOL AUTHORS
Galaxy for
DEVELOPERS
Galaxy for
ADMINS
News
New History, Storage Dashboard, Bulk History Operations, Deferred Datasets, OpenAPI & much more!
The European Galaxy Team is hiring!
The Freiburg Galaxy Team is looking for a Systems Engineer/DevOps Engineer!
Galaxy Governance Status Update
Updates about the different governance bodies
New Paper "Creating a good learning and sharing environment for bioinformatics"
Tomas Klingström and J.I. Ohlsson have published a paper about the use of BioContainers, Galaxy, and the GTN for bioinformatics researchers.
GCC2022: Registration open for Webinar mode
For those that won't attend in person, the GCC Organizing Committee is happy to announce a virtual webinar-like option
Events
A forum to share updates and discuss community-wide topics
Oct 3 - Oct 7European Galaxy Days (EGD)
European Galaxy Community meeting in Autumn
Oct 3 - Oct 7Cloud Computing Workshop
Online video tutorials about the use of cloud computing resources for MS-based proteomics.
Oct 13Galaxy Community Call: Muon Science community
A forum to share updates and discuss community-wide topics
Oct 27Galaxy Community Call: Galaxy Release Process: Overview and Coming Changes
A forum to share updates and discuss community-wide topics
Recent Videos
How Galaxy Imaging makes cloud-based image analysis possible
Presented at the Euro-BioImaging Virtual Pub
How to launch Galaxy workflows from Dockstore
Dockstore and Galaxy are now integrated
Galaxy 21.09 Release Highlights
New Toolbox; Change Datatype + DBkey; Remote Files Enhancements
Image analysis in Galaxy - pain points and lessons learnt
October 28 Galaxy Developer Round Table
Fast, scalable, free, & user-friendly Galaxy workflows for reference genome assembly
The latest version of VGP's pipeline has been ported to Galaxy.
Blog
Mental Health Assessment Tools
Tenth blog post presenting the Outreachy project on Mental Health
Why we should support the underrepresented communities
Ninth blog post presenting the Outreachy project on Mental Health
Galaxy + Nextflow at CFSAN, FDA.
How Nextflow pipelines are integrated into Galaxy project at CFSAN, FDA.
Galaxy Well-being and Mental Health Project Survey Result Highlights
Eighth blog post presenting the Outreachy project on Mental Health
Galaxy Well-being and Mental Health Project GCC2022 BoF Session Highlights
Seventh blog post presenting the Outreachy project on Mental Health
Careers
Stratton Lab, Dept. of Physiology & Cell Biology, Davis Heart and Lung Research Institute, Columbus, Ohio, United States
Community Director for the Global Galaxy Project
Department of Biology, Johns Hopkins University, Baltimore, Maryland, United States
Pfizer, Cambridge, Massachusetts, United States
Research Associate in Biomedical Data Science
Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore. Maryland, United States
New Platforms
Standard tools for DNA/RNA analysis and additional ones on project demands.
NGS data analysis focusing on microRNAs and their sequence variants—isomiRs.
An integrated workflow system to facilitate understanding of genotype-phenotype correlations in cases of mitochondrial dysfunction.
The Indian community server.
Determine the composition of a viral population.
A user-friendly website for metataxonomic analysis from raw reads to statistical analysis.
BLAST for barley, wheat, and rye. Part of IPK Crop Analysis Tools Suite (CATS).
Recent Publications
Martin, D.P., Lytras, S., Lucaci, A.G., Maier, Gruning, B. ... Kosakovsky Pond S.L. (2022). bioRxiv.
Giraldo-Calderón, G. I., Harb, O.S., Kelly S.A., and Rund S. SC, Roos D.S., McDowell M.A. (2022). Current Opinion in Insect Science.
Galaxy workflows for fragment-based virtual screening: A case study on the SARS-CoV-2 main protease
Bray, S., Dudgeon, T., Skyner, R., Backofen, R., Grüning, B., & Delft, F. von. (2021). ChemRxiv.
Chappell, K., Francou, B., Habib, C., Huby, T., Leoni, M., … Bouligand, J. (2021). Clinical Chemistry, hvab220.
MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging
Schapiro, D., Sokolov, A., Yapp, C., Chen, Y.-A., Muhlich, J. L., … Sorger, P. K. (2021). Nature Methods, 1–5.
miRGalaxy: Galaxy-Based Framework for Interactive Analysis of microRNA and isomiR Sequencing Data
Glogovitis, I., Yahubyan, G., Würdinger, T., Koppers-Lalic, D., & Baev, V. (2021). Cancers, 13(22), 5663.
Tangaro, M. A., Mandreoli, P., Chiara, M., Donvito, G., Antonacci, M., … Zambelli, F. (2021). BMC Bioinformatics, 22(15), 544.