Galaxy is an open-source platform for FAIR data analysis that enables users to:
- use tools from various domains (that can be plugged into workflows) through its graphical web interface.
- run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
- manage data by sharing and publishing results, workflows, and visualizations.
- ensure reproducibility by capturing the necessary information to repeat and understand data analyses.
The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.
Galaxy for SCIENTISTS
Galaxy for TRAINERS
Galaxy for TOOL DEVELOPERS
Galaxy for DEVELOPERS
Galaxy for ADMINS
GTN Smörgåsbord 2: 14-18 March – A second Smörgåsbord with even more Galaxy Training
How does the GTN stay FAIR and Collaborative? – Find out how contributing simple markdown tutorials can result in fantastically FAIR training.
Omicron and SARS-CoV-2 genome surveillance – A first view of the Omicron lineage’s mutational pattern derived transparently and fully reproducibly from raw sequencing reads
GTN Video Library – Videos from online training events are now easier to find.
GTN API with OpenAPI 3 specification – Access data from the GTN in a more accessible, API based way.
Structural variant discovery from long-read sequencing data on the cloud with Galaxy in Terra – Jan 19. Galaxy in AnVIL for structural variants.
Galaxy Papercuts CoFest Day – Jan 20. A community contribution day
Microbiome Bioinformatics with QIIME2 – Jan 31. We'll be teaching w/ our new Galaxy graphical interface - join us and learn to use QIIME 2 through a GUI! Register by January 7.
Galaxy Developer Roundtable – Feb 3. Volunteer to lead the discussion
Galaxy Developer Roundtable – Feb 17. Volunteer to lead the discussion
How Galaxy Imaging makes cloud-based image analysis possible – Presented at the Euro-BioImaging Virtual Pub
How to launch Galaxy workflows from Dockstore – Dockstore and Galaxy are now integrated
Galaxy 21.09 Release Highlights – New Toolbox; Change Datatype + DBkey; Remote Files Enhancements
Image analysis in Galaxy - pain points and lessons learnt – October 28 Galaxy Developer Round Table
Fast, scalable, free, & user-friendly Galaxy workflows for reference genome assembly – The latest version of VGP's pipeline has been ported to Galaxy.
Commoditising open computing in Galaxy – Transparent, reproducible open computing as a public good
A user's guide to the virtual, automated, computing Lab Notebook in Galaxy. – How a "Redo" button enables transparent and open scientific computing.
A contributor's guide to the Galaxy – How to make Galaxy even better
PhD Student – Faculty of Science, Technology, Engineering and Mathematics (STEM) at The Open University, UK
Community Director for the Global Galaxy Project – Department of Biology, Johns Hopkins University, Baltimore, Maryland, United States
UI/UX Engineer – Biology Department, Johns Hopkins University, Baltimore, Maryland, United States
DevOps Engineer – Department of Biology, Johns Hopkins University, Baltimore, Maryland, United States
Scientific software developer – RECETOX, Brno, Czechia
Galaxy@AuBi – Standard tools for DNA/RNA analysis and additional ones on project demands.
miRGalaxy – NGS data analysis focusing on microRNAs and their sequence variants—isomiRs.
MitoLink – An integrated workflow system to facilitate understanding of genotype-phenotype correlations in cases of mitochondrial dysfunction.
Galaxy India – The Indian community server.
VVV – Determine the composition of a viral population.
SHAMAN – A user-friendly website for metataxonomic analysis from raw reads to statistical analysis.
IPK Blast – BLAST for barley, wheat, and rye. Part of IPK Crop Analysis Tools Suite (CATS).
Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function – Martin, D.P., Lytras, S., Lucaci, A.G., Maier, Gruning, B. ... Kosakovsky Pond S.L. (2022). bioRxiv.
VectorBase.org updates: bioinformatic resources for invertebrate vectors of human pathogens and related organisms – Giraldo-Calderón, G. I., Harb, O.S., Kelly S.A., and Rund S. SC, Roos D.S., McDowell M.A. (2022). Current Opinion in Insect Science.
Galaxy workflows for fragment-based virtual screening: A case study on the SARS-CoV-2 main protease – Bray, S., Dudgeon, T., Skyner, R., Backofen, R., Grüning, B., & Delft, F. von. (2021). ChemRxiv.
Galaxy Is a Suitable Bioinformatics Platform for the Molecular Diagnosis of Human Genetic Disorders Using High-Throughput Sequencing Data Analysis. Five Years of Experience in a Clinical Laboratory – Chappell, K., Francou, B., Habib, C., Huby, T., Leoni, M., … Bouligand, J. (2021). Clinical Chemistry, hvab220.
MCMICRO: A scalable, modular image-processing pipeline for multiplexed tissue imaging – Schapiro, D., Sokolov, A., Yapp, C., Chen, Y.-A., Muhlich, J. L., … Sorger, P. K. (2021). Nature Methods, 1–5.
miRGalaxy: Galaxy-Based Framework for Interactive Analysis of microRNA and isomiR Sequencing Data – Glogovitis, I., Yahubyan, G., Würdinger, T., Koppers-Lalic, D., & Baev, V. (2021). Cancers, 13(22), 5663.
Laniakea@ReCaS: Exploring the potential of customisable Galaxy on-demand instances as a cloud-based service – Tangaro, M. A., Mandreoli, P., Chiara, M., Donvito, G., Antonacci, M., … Zambelli, F. (2021). BMC Bioinformatics, 22(15), 544.