Galaxy Community Hub

Galaxy is an open, web-based platform for accessible, reproducible, and transparent computational research.

  • Accessible: programming experience is not required to easily upload data, run complex tools and workflows, and visualize results.
  • Reproducible: Galaxy captures information so that you don't have to; any user can repeat and understand a complete computational analysis, from tool parameters to the dependency tree.
  • Transparent: Users share and publish their histories, workflows, and visualisations via the web.
  • Community centered: Our inclusive and diverse users (developers, educators, researchers, clinicians, etc.) are empowered to share their findings.

Welcome to the Galaxy Community Hub, where you'll find community curated documentation of all things Galaxy.


  News

GCC2021 Registration is Open – Please join us at Galaxy's annual community gathering

GCC2021 Conference Fellowships – Apply by May 7

GCC2021 Abstract Submission are Open – Abstracts are due May 7

April 2021 Galactic News – GCC2021 Abstracts and Registration are open, plus lots more.

Share your favorite James Taylor Story – Help us celebrate James on May 18

  Events

Galaxy and Jupyter for RNA-Seq and complex data analyses- Apr 12. Next generation sequencing for RNA-Seq and Epigenetics

ELIXIR and Galaxy Project- Apr 16. a high level overview of the Galaxy Project - what it is, what it does and how to start using it. And the Elixir Galaxy and currently forming Galaxy Czech communities

NGS Data Analysis with Galaxy- Apr 19. NGS data analysis harnessing the power of Galaxy

Plant Transcriptome Analysis using Galaxy- Apr 19. ...with a special focus on bulk and single-cell RNA-Seq data analysis...

Plant genomics: chloroplast genome assembly using Galaxy Australia- Apr 21. An introduction to RNA-seq analysis using the Galaxy Australia web platform

  @galaxyproject


  Recent Videos

ELIXIR Webinar: Speed up your data analysis with Galaxy: - Little know features (lots of them)

Running workflows in Galaxy from the Workflow Hub - Galaxy workflows available in the Workflow Hub can be directly run on usegalaxy.eu

ELIXIR Webinar: Galaxy Bridge to Jupyter Notebooks and RStudio - Interactive tools in Galaxy

ELIXIR Webinar: Processing thousands of datasets simultaneously - From SRA/ENA import and metadata annotation to parallel processing

immuneML Quickstart in Galaxy - Simplified interfaces for immune receptor and repertoire classification in the immuneML server

  Blog

Tips and tricks for Galaxy – "a useful bag of tricks and tools"

GTN Smörgåsbord: A Global Galaxy Course – A report on the largest Galaxy event ever.

How to choose the Galaxy that works for you – With hundreds of options available to use Galaxy, how do you pick the right one for you?

Global framework for SARS-CoV-2 data analysis: Application to intrahost variation – Parts 1 and 2

Change a datatype on multiple datasets

  Careers

Ingénieur de Recherche Bioinformatique – Institut Pasteur de Lille, Lille, France . Apply by Sep 1.

Academic Specialist Bioinformatician – University of Melbourne, Melbourne, Victoria, Australia . Apply by Apr 19.

Computational Biologist – GalaxyWorks, Baltimore (or remote), Maryland, United States

Post-doctoral researcher: proteomics and multi-omics of lung disease – University of Minnesota, Minneapolis, Minnesota, United States

Experienced specialist in Next Generation Sequencing data analysis – Research Core Unit Genomics (RCUG), Hannover Medical School, Hannover, Germany


  New Platforms

IPK Blast - BLAST for barley, wheat, and rye. Part of IPK Crop Analysis Tools Suite (CATS).

immuneML - Machine learning-based analysis and classification of adaptive immune receptors and repertoires (AIRR).

ASaiM Docker Image - Tools for metagenomic and metatranscriptomic studies, hierarchically organized to orient user choice toward the best tool for a given task.

InteractoMIX - One-stop resource offering a wide range of computational analyses from proteome-wide interactomes to structure of protein complexes.

ATACgraph - Profile accessible chromatin regions and provide ATAC-seq-specific information including definitions of nucleosome-free regions (NFRs) and nucleosome-occupied regions.

  Recent Pubs

RNA-Seq Data Analysis in Galaxy - Batut, B., van den Beek, M., Doyle, M. A., & Soranzo, N. (2021) In E. Picardi (Ed.), RNA Bioinformatics (pp. 367–392). Springer US.

JBrowse Connect: A server API to connect JBrowse instances and users - Yao, E., Buels, R., Stein, L., Sen, T. Z., & Holmes, I. (2020). PLOS Computational Biology, 16(8), e1007261.

Intuitive, reproducible high-throughput molecular dynamics in Galaxy: A tutorial - Bray, S. A., Senapathi, T., Barnett, C. B., & Grüning, B. A. (2020). Journal of Cheminformatics, 12(1), 54.

Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring - Maier, W., Bray, S., Beek, M. van den, Bouvier, D., Coraor, N., Miladi, M., Singh, B., Argila, J. R. D., Baker, D., Roach, N., Gladman, S., Coppens, F., Martin, D., Lonie, A., Gruning, B., Pond, S. K., & Nekrutenko, A. (2021) BioRxiv, 2021.03.25.437046.

Fast and accurate genome-wide predictions and structural modeling of protein-protein interactions using Galaxy - Guerler, A., Baker, D., Beek, M. van den, Bouvier, D., Coraor, N., Schatz, M. C., & Nekrutenko, A. (2021). BioRxiv, 2021.03.17.435706.