Galaxy is an open-source platform for FAIR data analysis that enables users to:
- Use tools from various domains (that can be plugged into workflows) through its graphical web interface.
- Run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
- Manage data by sharing and publishing results, workflows, and visualizations.
- Ensure reproducibility by capturing the necessary information to repeat and understand data analyses.
The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.
Galaxy has gained a Beacon integration that enables users to publish genetic variance data conveniently via Beacon project
Democratising GPU infrastructures by providing accelerated JuypterLab instances via Galaxy and combining them with HPC workflows
Accessibility improvement Highlights for the upcoming 23.0 release, and a few words on accessibility in general
Our new paper about the Galaxy Training Network has been published this week in Plos Computational Biology.
Have you seen my new watch?
May 22 - May 26GTN Smörgåsbord 2023
We are happy to announce that the next edition of the GTN Smörgåsbord training event will take place on May 22-26, 2023! It will once again be free, online, self-paced, and choose-your-own-adventure style. It will feature all the content of previous editions, plus lots more!
The purpose of this workshop is to gain knowledge on detect (foodborne) pathogens from (direct Nanopore) sequencing data using Galaxy. The workshop will be on February 2nd 2023 as a 1-day hybrid (F2F at FHNW Muttenz, Switzerland and online), free and practical workshop.
Feb 6 - Feb 10Single-cell RNA-seq analysis using Galaxy
Participants will be guided through the droplet-based scRNA-seq analysis pipelines from raw reads to trajectories.
A forum to share updates and discuss community-wide topics
Presented at the Euro-BioImaging Virtual Pub
Dockstore and Galaxy are now integrated
New Toolbox; Change Datatype + DBkey; Remote Files Enhancements
October 28 Galaxy Developer Round Table
The latest version of VGP's pipeline has been ported to Galaxy.
Tenth blog post presenting the Outreachy project on Mental Health
Ninth blog post presenting the Outreachy project on Mental Health
How Nextflow pipelines are integrated into Galaxy project at CFSAN, FDA.
Eighth blog post presenting the Outreachy project on Mental Health
Stratton Lab, Dept. of Physiology & Cell Biology, Davis Heart and Lung Research Institute, Columbus, Ohio, United States
Pfizer, Cambridge, Massachusetts, United States
Department of Biostatistics, Bloomberg School of Public Health, Johns Hopkins University, Baltimore. Maryland, United States
Standard tools for DNA/RNA analysis and additional ones on project demands.
NGS data analysis focusing on microRNAs and their sequence variants—isomiRs.
An integrated workflow system to facilitate understanding of genotype-phenotype correlations in cases of mitochondrial dysfunction.
The Indian community server.
Determine the composition of a viral population.
A user-friendly website for metataxonomic analysis from raw reads to statistical analysis.
BLAST for barley, wheat, and rye. Part of IPK Crop Analysis Tools Suite (CATS).
Martin, D.P., Lytras, S., Lucaci, A.G., Maier, Gruning, B. ... Kosakovsky Pond S.L. (2022). bioRxiv.
Giraldo-Calderón, G. I., Harb, O.S., Kelly S.A., and Rund S. SC, Roos D.S., McDowell M.A. (2022). Current Opinion in Insect Science.
Bray, S., Dudgeon, T., Skyner, R., Backofen, R., Grüning, B., & Delft, F. von. (2021). ChemRxiv.
Chappell, K., Francou, B., Habib, C., Huby, T., Leoni, M., … Bouligand, J. (2021). Clinical Chemistry, hvab220.
Schapiro, D., Sokolov, A., Yapp, C., Chen, Y.-A., Muhlich, J. L., … Sorger, P. K. (2021). Nature Methods, 1–5.
Glogovitis, I., Yahubyan, G., Würdinger, T., Koppers-Lalic, D., & Baev, V. (2021). Cancers, 13(22), 5663.
Tangaro, M. A., Mandreoli, P., Chiara, M., Donvito, G., Antonacci, M., … Zambelli, F. (2021). BMC Bioinformatics, 22(15), 544.