13 May 2014
Anyone affiliated with the IGMM can participate in this workshop. To sign up for the course, please contact Graeme Grimes of the Semple Lab.
Are you a life science researcher who needs to do complex analysis on large datasets?
Galaxy is an open, web-based platform for data intensive biological research that enables non-bioinformaticians to create, run, tune, and share their own bioinformatic analyses.
These hands-on workshops will teach participants how to integrate data, and perform simple and complex analysis within Galaxy. They will also cover data visualization and visual analytics, and how to share and reuse your bioinformatic analyses, all from within Galaxy.
No programming or Linux command line experience is required.
Welcome, Logistics, and Galaxy Platforms
|9:30|| Getting our hands dirty: a worked ChIP-Seq example
Galaxy basics, quality control, basic ChIP-Seq analysis
|11:10|| Getting our hands dirtier, continued
Interval and set operation, repeatable workflows, Visual analytics
|13:30|| RNA-Seq Worked Example
Quality control and paired end data, mapping and splice junction identification
|15:00|| RNA-Seq Worked Example, continued
Differential expression, and tool choices, more visual analytics
This is a hands-on workshop being held an IGMM computer lab. The workshop will use the computers in the lab, but feel free to also bring your own laptop.
This workshop is generously supported by the MRC Institute of Genetics and Molecular Medicine at The University of Edinburgh and an AWS in Education grant award.
This workshop is part of the May 2014 Galaxy UK Tour, which features events in Norwich, as well as other events in Edinburgh.