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May 11, 2012 Distribution & News Brief

Complete News Brief

Highlights:

gatk-workflow
* **Emboss** tools and datatypes __have now moved from the ***Galaxy distribution** to the **[Galaxy Main Tool Shed](http://toolshed.g2.bx.psu.edu/)__***. * [Tool Integration Tests](/src/testing-installed-tools/index.md), [Custom Tool Panel Configuration](/src/galaxy-tool-panel//index.md#managing-the-layout-of-your-galaxy-tool-panel), and [Configurable Tool Output Locations](/src/admin/tools/multiple-output-files/index.md). * Improved [Multiprocess Job Handling](/src/admin/config/performance/scaling/index.md) and [Enhanced OpenID Support](http://openid.net/). * **[GATK](http://www.broadinstitute.org/gsa/wiki) version 1.4**, **[FreeBayes](http://github.com/ekg/freebayes)**, Updated **Megablast** using **[NCBI BLAST+](http://blast.ncbi.nlm.nih.gov/Blast.cgi)**, **[Trinity](http://trinityrnaseq.sourceforge.net)**, **[WormBase 2](http://www.wormbase.org)**, and **[IGB](http://bioviz.org/igb/index.html)** external display. * **[Trackster](/src/learn/visualization/index.md)** upgrades include strand coloring, interval datatype support, and tabix indexing (fast!!). * Updated **User Interface**, **Workflow-API** upgrades, and Custom **UCSC Display**.

http://getgalaxy.org

new:     % hg clone http://www.bx.psu.edu/hg/galaxy galaxy-dist
upgrade: % hg pull -u -r 17d57db9a7c0

Thanks for using Galaxy!

Jennifer Jackson

Galaxy Team