BRIDGE
Public server: | BRIDGE Server |
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Container: | BRIDGE in Docker |
Scope: | Domain specific |
Summary: | Prepare, simulate and analyse and visualise molecular simulations, especially molecular dynamics and free energies. |
comments
BRIDGE (Biomolecular Reaction and Interaction Dynamics Global Environment) is a Computational Chemistry flavour of Galaxy - a webserver for preparing, simulating and analysing and visualising molecular simulations, especially molecular dynamics and free energies. Software such as NAMD, GROMACS and CHARMM can be used to define and simulate biological macromolecules, perform conformational analysis from trajectory data and conduct data analytics of large scale protein motions using statistical rigor.
user support
- Tutorial: High Throughput Molecular Dynamics and Analysis (and more GTN computational chemistry training)
- Gitter Support Channel
quotas
Storage and computational quotas.
citations
Senapathi, T., Barnett, C. B., & Naidoo, K. J. (2020). BRIDGE: An Open Platform for Reproducible Protein-Ligand Simulations and Free Energy of Binding Calculations. Bio-Protocol, 10(17), e3731–e3731. doi: 10.21769/BioProtoc.3731
- Senapathi, T., Bray, S., Barnett, C. B., Grüning, B., & Naidoo, K. J. (2019). Biomolecular Reaction & Interaction Dynamics Global Environment (BRIDGE). Bioinformatics. doi: 10.1093/bioinformatics/btz107
- BRIDGE tagged publications in the Galaxy Publication library
sponsors
Developed at the Scientific Computing Research Unit of the University of Cape Town.
- This BRIDGE server is hosted as part of the Galaxy CompChem ZA project on the ILIFU resources.