CAFU
| Public server: | CAFU Server |
|---|---|
| Container: | CAFU Docker |
| Scope: | Domain specific |
| Summary: | A Galaxy framework for exploring unmapped RNA-Seq data |
comments
CAFU is a Galaxy-based bioinformatics framework for comprehensive assembly and functional annotation of unmapped RNA-seq data from single- and mixed-species samples which integrates plenty of existing NGS analytical tools and our developed programs, and features an easy-to-use interface to manage, manipulate and most importantly, explore large-scale unmapped reads.
user support
For comments/suggestions/error reports, please contact Siyuan Chen (chenzhuod@gmail.com) or Jingjing Zhai (zhaijingjing603@gmail.com)
- Tutorials, including a User Manual
- Test datasets referred in the tutorials
quotas
citations
CAFU: A Galaxy framework for exploring unmapped RNA-Seq data, Siyuan Chen, Chengzhi Ren, Jingjing Zhai, Jiantao Yu, Xuyang Zhao, Zelong Li, Ting Zhang, Wenlong Ma, Zhaoxue Han, Chuang Ma. Briefings in Bioinformatics, doi:10.1093/bib/bbz018.
- CAFU tagged publications in the Galaxy Publication library
sponsors
CAFU is developed and maintained by the lab of Prof. Chuang Ma at the Center of Bioinformatics, College of Life Sciences, Northwest A&F University.