Martin Luther U. Halle-Wittenberg

Public server:
Scope:
Summary:Provides implementations of InMoDe, CRISPRer, TALgetter, TALgetterLong, TALENoffer, and Dimont

Comments

  • Provides implementations of these tools:
  • InMoDe is a collection of Tools for learning and visualizing inhomogeneous parsimonious Markov models (iPMMs).
  • CRISPRer is a tool for genome-wide selection and assessment of CRISPR/Cas protospacers.
  • TALgetter allows you to scan input sequences for putative target sites of a given TAL (transcription activator-like) effector as typically expressed by many Xanthomonas bacteria.
  • TALgetterLong allows you to scan input sequences for putative target sites of a given TAL (transcription activator-like) effector as typically expressed by many Xanthomonas bacteria in large input data, but lacks some of the features of TALgetter (e.g., computation of empirical p-values).
  • TALENoffer is a tool for predicting off-targets of TAL effector nucleases (TALENs).
  • Dimont (beta) is a universal tool for de-novo motif discovery. Dimont has successfully been applied to ChIP-seq, ChIP-exo and protein-binding microarray (PBM) data.
  • These applications were developed by the groups of Bioinformatics and Pattern Recognition and/or Bioinformatics in collaboration with internal and external partners.

User Support

  • Email: grau AT informatik DOT uni DASH halle DOT de

Quotas

    Citations

    Sponsors