Oqtans
Public server: | Oqtans Galaxy Server |
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Scope: | Domain specific |
Summary: | Customized Galaxy, extended with machine learning based tools for sequence and tiling array data analysis. |
comments
The Oqtans tool suite is available as:
- as a public Galaxy instance
- as a git repository
- most of these tools are moreover available from the Galaxy Toolshed
- Oqtans capabilities are shown with Galaxy Pages for which all data, parameters, intermediate output, and final results are made public.
user support
For problems with any of the non-standard tools, please contact the [MLB Galaxy Support Team](mailto:galaxy AT raetschlab DOT org).
quotas
citations
Oqtans: The RNA-seq Workbench in the Cloud for Complete and Reproducible Quantitative Transcriptome Analysis, by Sreedharan, et al., Bioinformatics (2014), doi: 10.1093/bioinformatics/btt731
- Oqtans: a multifunctional workbench for RNA-seq data analysis, Vipin T Sreedharan, Sebastian J Schultheiss, Géraldine Jean, André Kahles, Regina Bohnert, Philipp Drewe, Pramod Mudrakarta, Nico Görnitz, Georg Zeller and Gunnar Rätsch. BMC Bioinformatics 2014 15(Suppl 3):A7
- https://doi.org/10.1186/1471-2105-15-S3-A7
- Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data, Sebastian J Schultheiss, Géraldine Jean, Jonas Behr, Regina Bohnert, Philipp Drewe, Nico Görnitz, André Kahles, Pramod Mudrakarta, Vipin T Sreedharan, Georg Zeller and Gunnar Rätsch. BMC Bioinformatics 2011 12(Suppl 11):A7, doi:10.1186/1471-2105-12-S11-A7
- Oqtans tagged publications in the Galaxy Publication library
sponsors
Machine Learning in Biology (MLB) Group at cBio@MSKCC in New York City, United States.