PiRATE: a Pipeline to Retrieve and Annotate Transposable Elements

Virtual Machine:
Scope:
Summary:Detect, classify and annotate TEs of non-model organisms.

Comments

  • Genome assembly of non-model organisms is usually not at chromosomal level and higly fragmented. This fragmentation is recognized to be, in part, the result of a bad assembly of the transposable elements (TEs) copies, increasing the difficulty to detect and annotate them.

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Citations

Sponsors

  • IFREMER