Welcome everybody, and thank you for joining this course!

Everything you need for this course can be found on this webpage. More information including links to all training materials can be found by clicking on each session

Note: You can also switch to the rich view version of this page.

Introduction

Start here. This will cover all the logistics and practical information for this training week.

Topic Presentor Type Video Length GTN material FAQ Slack
Welcome to GCC2021 & Course Information Helena Rasche Saskia Hiltemann Lecture Video Slides #general
Admin Training Logistics Helena Rasche Tutorial Video #general
About Certificates custom Video
Meet & Join the Galaxy Community! The Global GTN Community Video GalaxyProject Home Galaxy servers Galaxy Training Network Support Galaxy Publications Galaxy Communities Events Mailing Lists Galaxy Working Groups GitHub Gitter Chat GTN Gitter PaperCuts GTN CoFest Twitter Twitter
Webinar Series: Galaxy Resources For.. Webinar Series: Galaxy Resources For.. Video Galaxy Webinar Page #event-gcc2021

Note: Length indicates the duration of the video. If you want to follow along and/or perform the tutorial yourself, it will likely take longer to complete.

Introduction to Galaxy

Start here if you are new to Galaxy. These videos will introduce you to the Galaxy platform, and walk you through your first analyses

Topic Presentor Type Video Length GTN material FAQ Slack
A Very Short Introduction to Galaxy Anton Nekrutenko Demo Video Slides link #00-galaxy-intro
Galaxy Intro for Everyone (non-genomics) Anne Fouilloux Hands-on Tutorial Video Tutorial link #00-galaxy-intro

Note: Length indicates the duration of the video. If you want to follow along and/or perform the tutorial yourself, it will likely take longer to complete.

Day 1

Topic Presentor Type Video Length GTN material FAQ Slack
Daily Icebreaker Question custom Video
Ansible Video Slides Tutorial #01-ansible
Installing Galaxy with Ansible Helena Rasche Tutorial Video Week Overview Slides Tutorial (All Parts) Database Slides systemd Slides Moving Towards Production Slides #02-ansible-galaxy

Note: Length indicates the duration of the video. If you want to follow along and/or perform the tutorial yourself, it will likely take longer to complete.

Day 2

Topic Presentor Type Video Length GTN material FAQ Slack
Daily Icebreaker Question custom Video
Running jobs in Singularity Simon Gladman Tutorial Video Tutorial #03-singularity
Ephemeris Catherine Bromhead Tutorial Video Slides Tutorial #03-ephemeris
Users, Groups, and Quotas These slides are narrated by AWS Polly. Tutorial Video Slides #general
Reference Data These slides are narrated by AWS Polly. Tutorial Video Slides Tutorial #04-cvmfs
Data Libraries Saskia Hiltemann Tutorial Video Tutorial #05-data-libraries

Note: Length indicates the duration of the video. If you want to follow along and/or perform the tutorial yourself, it will likely take longer to complete.

Day 3

Topic Presentor Type Video Length GTN material FAQ Slack
Daily Icebreaker Question custom Video
Galaxy Cluster Computing Helena Rasche Tutorial Video Slides Tutorial #07-compute-cluster
Mapping Jobs to Destinations Helena Rasche Tutorial Video Tutorial #07-compute-cluster

Note: Length indicates the duration of the video. If you want to follow along and/or perform the tutorial yourself, it will likely take longer to complete.

Day 4

Topic Presentor Type Video Length GTN material FAQ Slack
Daily Icebreaker Question custom Video
Pulsar Simon Gladman Tutorial Video Slides Exercise #08-pulsar
DB queries, command line & scripts These slides are narrated by AWS Polly. Tutorial Video Slides Exercise #09-storage
Monitoring: Telegraf, InfluxDB, Grafana Tutorial Video Slides Tutorial #10-monitoring
Maintenance, Backup and Restore These slides are narrated by AWS Polly. Tutorial Video Slides #10-monitoring
Upgrading Galaxy Simon Gladman Tutorial Video tutorial #11-cyoa

Note: Length indicates the duration of the video. If you want to follow along and/or perform the tutorial yourself, it will likely take longer to complete.

Day 5 - Choose Your OWN Adventure

Topic Presentor Type Video Length GTN material FAQ Slack
Daily Icebreaker Question custom Video
Meet & Join the Galaxy Community! The Global GTN Community Video GalaxyProject Home Galaxy servers Galaxy Training Network Support Galaxy Publications Galaxy Communities Events Mailing Lists Galaxy Working Groups GitHub Gitter Chat GTN Gitter PaperCuts GTN CoFest Twitter Twitter
Monitoring With Reports Tutorial Video Reports Exercise #10-monitoring
Training Infrastructure as a Service (TIaaS) Helena Rasche Tutorial Video TIaaS Exercise #12-tiaas
Interactive Tools Anthony Bretaudeau Tutorial Video Slides Tutorial #11-cyoa
Jenkins & Automation Tutorial Video Exercise #11-cyoa
Advanced Customisation Tutorial Video Slides #11-cyoa
When things go wrong: Galaxy Server Troubleshooting Tutorial Video Slides #11-cyoa
Python 2 to Python 3! Tutorial Video Docs #11-cyoa
Tool Development Tutorial Video Slides, Exercise #11-cyoa
Dataset Collections Tutorial Video DCs, Rule based #11-cyoa
Developing your own Training Tutorial Video Setting up, Exercise #11-cyoa
Storage management Gianmauro Cuccuru Tutorial Video Exercise #09-storage

Note: Length indicates the duration of the video. If you want to follow along and/or perform the tutorial yourself, it will likely take longer to complete.