January 21, 2016, and
January 22, 2016
**Instructor: Dave Clements
Location: Large Classroom (Thursday), Small Classroom (Friday)
Levy Library (11th floor)
Annenberg Building. 1468 Madison Ave.
Icahn School of Medicine at Mount Sinai (ISMMS), New York City **
Registration is free and open to any member of the ISMMS community. Space is available on a first-come, first served basis. Registration is now open. Please contact Andrew Sharp or Stuart Scott for the link.
Are you a life scientist who needs to do complex analysis on large datasets?
Galaxy is an open, web-based platform for data intensive life science research that enables non-bioinformaticians to create, run, tune, and share their own bioinformatic analyses.
Most of the workshop will be hands-on and teach participants how to integrate data, and perform simple and complex analysis within Galaxy. It will also cover data visualization and visual analytics, and how to share and reuse your bioinformatic analyses, all from within Galaxy.
No programming or Linux command line experience is required.
The agenda below is tentative and should be considered a work in progress.
Introductions and logistics
|9:20|| Basic Analysis with Galaxy
Walk through a worked, hands-on example demonstrating basic analysis with Galaxy
|11:00|| Basic Analysis into Reusable Workflows
Genericize our analysis into something we can use again.
|12:20||Lunch (on your own)|
|1:20|| RNA-Seq Example Part I
Review 1) NGS data quality issues and some quality control options in Galaxy; and 2) Mapping and Splice Junction Calling
|3:05|| RNA-Seq Example Part II
We need it!