University of Missouri Informatics Institute
    Introduction to Galaxy
    Thursday May 2, 2013

    **Instructor: Dave Clements, Galaxy Project, Emory University

    Bond Life Sciences Center,

    Room 572 ** (note room change)
    1201 Rollins St


    The workshop is free and is open to members of University of Missouri and surrounding institutions. The workshop is also now full.


    Are you a life science researcher who needs to do complex analysis on large datasets?

    Galaxy is an open, web-based platform for data intensive biological research that enables non-bioinformaticians to create, run, tune, and share their own bioinfor-matic analyses.

    These hands-on workshops will teach participants how to integrate data, and perform simple and complex analysis within Galaxy. They will also cover data visualization and visual analytics, and how to share and reuse your bioinformatic analyses, all from within Galaxy.

    No programming or Linux command line experience is required.


    Time Topic
    9:00 Welcome
    Introductions and logistics
    9:20 Basic Analysis with Galaxy
    Walk through a worked, hands-on example demonstrating basic analysis with Galaxy
    10:40 Break
    11:00 Basic Analysis into Reusable Workflows
    Genericize our analysis into something we can use again.
    11:20 RNA-Seq Example Part I
    Review NGS data quality issues and some quality control options in Galaxy; Mapping and Splice Junction Calling with Tophat
    12:20 Lunch (catered)
    1:05 Galaxy Project Overview
    Introduction to Galaxy and the Galaxy community
    1:25 RNA-Seq Example Part II
    Cufflinks, Visualization, and Visual Analytics
    2:35 Break
    2:55 Sharing, Publishing, and Reproducibility with Galaxy
    Share and publish analysis, datasets, and workflows with Galaxy
    3:15 Setting up your own Galaxy Cluster on the Amazon Cloud
    Every participant will set up their own functional and populated (but short-lived) Galaxy server on the cloud
    5:00 Done


    Amazon Web Services
    2013 Missouri Galaxy Workshop Tour

    This workshop is generously supported by an AWS in Education grant award, and University of Missouri Informatics Institute.

    This workshop is part of the 2013 Missouri Galaxy Workshop Tour.



    Please distribute to groups at the University of Missouri that might be interested. You are also encouraged to print a post a copy of the workshop flyer.


    Contact Christopher Bottoms or Galaxy Outreach.