Purdue University   Purdue University Bioinformatics Core, Cyber Center and Discovery Park
    Introduction to Galaxy
    October 22, 2012

    **Instructor: Dave Clements

    9am-5pm
    Room: MRGN 129 (new location)
    1201 W. State Street
    West Lafayette, IN 47907**

    A workshop for the Purdue community supported by
    the Bioinformatics Core, Cyber Center and Discovery Park,
    and an AWS in Education grant award

    Application

    The workshop is free and anyone in the Purdue Community can apply to attend. However, space is limited and admission is competitive and based on the strength of the applications received. The workshop application deadline was October 14. If you applied, you will be notified of your application status within a few days.

    Audience

    Are you a biological researcher who needs to do complex analysis on large datasets?

    Galaxy is an open, web-based platform for data intensive biological research that enables non-bioinformaticians to create, run, tune, and share their own bioinformatic analyses.

    This hands-on workshop will teach participants how to integrate data, and perform simple and complex analysis within Galaxy. They will also cover data visualization and visual analytics, and how to share and reuse your bioinformatic analyses, all from within Galaxy.

    Agenda

    Time Topic
    9:00 Welcome
    Introductions and logistics
    9:20 Basic Analysis with Galaxy
    Walk through a worked, hands-on example demonstrating basic analysis with Galaxy
    10:20 Basic Analysis into Reusable Workflows
    Genericize our analysis into something we can use again.
    10:40 Break
    11:00 RNA-Seq Example Part I
    Review NGS data quality issues and some quality control options in Galaxy; Mapping and Splice Junction Calling with Tophat
    12:00 Galaxy Project Overview
    Introduction to Galaxy and the Galaxy community
    12:20 Lunch
    1:40 RNA-Seq Example Part II
    Cufflinks, Visualization, and Visual Analytics
    2:30 Manage, Reuse and Share your Analyses with Galaxy
    Share and oublish analysis, datasets, and workflows with Galaxy
    2:50 Break
    3:10 Setting up your own Galaxy Cluster on the Amazon Cloud
    Every participant will set up their own functional and populated (but short-lived) Galaxy server on the cloud
    5:00 Done

    Prerequisites

    No programming or Linux command line experience is required.

    All work will be done in a web browser and we will use the computer workstations in the room. You do not need to bring a laptop.

    Support

    Amazon Web Services
    Purdue University Bioinformatics Core, Cyber Center and Discovery Park

    This workshop is generously supported by an AWS in Education grant award, and the Purdue University Bioinformatics Core, Cyber Center and Discovery Park.

    Please distribute

    Questions?

    Contact Galaxy Outreach @ outreach@galaxyproject.org.