University of Illinois at Urbana-Champaign High-Performance Biological Computing    NCSA
    Introduction to Galaxy
    October 16-17, 2012

    Instructors: Dave Clements with Christopher Fields

    1pm - 5pm
    Location - 1040 NCSA

    A workshop for the Illinois community supported by
    High-Performance Biological Computing (HPCBio),
    Roy J. Carver Biotechnology Center,
    IGB and NCSA

    Registration

    Workshop registration is $25. The workshop is open to anyone in the Illinois Community. However, space is limited and space is available on a first come, first served basis.

    Registration is now closed.

    Audience

    Are you a biological researcher who needs to do complex analysis on large datasets?

    Galaxy is an open, web-based platform for data intensive biological research that enables non-bioinformaticians to create, run, tune, and share their own bioinformatic analyses.

    This hands-on workshop will teach participants how to integrate data, and perform simple and complex analysis within Galaxy. They will also cover data visualization and visual analytics, and how to share and reuse your bioinformatic analyses, all from within Galaxy.

    Agenda

    There will be one workshop split into two consecutive days:

    1pm to 5pm on October 16 & October 17

    Day 1: October 16, 1-5pm
    Welcome
    Introductions and logistics
    Galaxy @ UIUC
    Basic Analysis with Galaxy
    Walk through a worked, hands-on example demonstrating basic analysis with Galaxy
    Basic Analysis into Reusable Workflows
    Genericize our analysis into something we can use again.
    Break
    ChIP-Seq Example
    Review NGS data quality issues and some quality control options in Galaxy; Peak calling with MACS
    Galaxy Project Overview
    Introduction to Galaxy and the Galaxy community
    Day 1 Ends
    Day 2: October 17, 1-5pm
    Gene Annotation
    ...
    Break
    Persistence, Sharing, and Publishing your Analyses with Galaxy
    Share and publish analysis, datasets, and workflows with Galaxy
    Basic analysis example: On your own
    Workshop Ends

    Prerequisites

    No programming or Linux command line experience is required.

    All work will be done in a web browser on your laptop. Please let us know if you don't have access to a laptop, we will have one for you.

    Support

    NCSA
    High-Performance Biological Computing

    A workshop for the University of Illinois community supported by High-Performance Biological Computing (HPCBio), Roy J. Carver Biotechnology Center, IGB and NCSA.

    IGB Galaxy Seminar: October 9

    [[Download poster

    One week before this workshop there will be an Institute for Genomic Biology Seminar that also features Galaxy:

    Addressing Irreproducibility of Biomedical Research Anton Nekrutenko, Ph.D.
    Associate Professor of Biochemistry and Molecular Biology
    Penn State University Tuesday, October 9 at Noon, 612 Institute for Genomic Biology (lower level)

    Questions?

    Contact Galaxy Outreach @ outreach@galaxyproject.org.