The Genome Analysis Centre
Introduction to Galaxy
9 May 2014

**Instructor: Dave Clements

9:00-16:00
Genome Seminar Room
The Genome Analysis Centre (TGAC), Norwich, UK**

Registration

Registration is now closed.

Audience

Are you a life scientist who needs to do complex analysis on large datasets?

Galaxy is an open, web-based platform for data intensive life science research that enables non-bioinformaticians to create, run, tune, and share their own bioinformatic analyses.

This hands-on workshop will teach participants how to integrate data, and perform simple and complex analysis within Galaxy. It will also cover data visualization and visual analytics, and how to share and reuse your bioinformatic analyses, all from within Galaxy.

No programming or Linux command line experience is required.

Agenda

The agenda below is tentative and should be considered a work in progress.

Time Topic
8:30 Registration
Registration and coffee
9:00 Welcome
Introductions and logistics
9:20 Basic Analysis with Galaxy
Walk through a worked, hands-on example demonstrating basic analysis with Galaxy
10:20 Basic Analysis into Reusable Workflows
Genericize our analysis into something we can use again.
10:40 Break
11:00 RNA-Seq Example Part I
Review NGS data quality issues and some quality control options in Galaxy; Mapping and Splice Junction Calling with Tophat
12:00 Galaxy Project Overview
Introduction to Galaxy and the Galaxy community
12:20 Lunch (catered)
13:05 RNA-Seq Example Part II
Cufflinks, Visualization, and Visual Analytics
13:55 Sharing, Publishing, and Reproducibility with Galaxy
Share and publish analysis, datasets, and workflows with Galaxy
14:15 Break
14:35 Setting up your own Galaxy Cluster on the Amazon Cloud
Every participant will set up their own functional and populated (but short-lived) Galaxy server on the cloud
16:00 Done

Amazon Web Services

May 2014 Galaxy UK Tour

Support

This workshop is generously supported by an AWS in Education grant award, and the The Genomics Analysis Centre (TGAC).

Galaxy May 2014 UK Tour

This workshop is part of the May 2014 Galaxy UK Tour, which features events in Norwich and Edinburgh.

Slides

Questions?

Contact TGAC Training or Galaxy Outreach.