UseGalaxy.eu Tool Updates for 2020-05-15

May 15, 2020

On 2020-05-15, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #211

hca_sc_scmap_tools

scmap_get_std_output was updated to 39370cc49ae7
scmap_scmap_cell was updated to b78cdc83a479

hca_sc_monocle3_tools

monocle3_create was updated to 5a4b2fcd04d1
monocle3_diffexp was updated to d333006ef72a
monocle3_learngraph was updated to 17e74fba97fd
monocle3_learngraph was updated to 8ec85828b6e6
monocle3_ordercells was updated to a14bd9053e2b
monocle3_partition was updated to 92ca41fbc123
monocle3_partition was updated to b253a59cbb98
monocle3_plotcells was updated to 016c39d243fb
monocle3_preprocess was updated to 181ef11cba9d
monocle3_reducedim was updated to 89aea3f27ed2
monocle3_topmarkers was updated to bc2df96ef963

Metagenomic Analysis

drep_dereplicate was updated to 8dfcdbeaeed8

hca_sc_label_analysis_tools

ct_build_cell_ontology_dict was updated to 982a151b2960
ct_combine_tool_outputs was updated to 44b6219cba2d
ct_get_consensus_outputs was updated to 559fbff1f573
ct_get_empirical_dist was updated to ce70358b0fe3
ct_get_tool_perf_table was updated to 71c809e81f66
ct_get_tool_pvals was updated to 39f348e76f41

hca_sc_garnett_tools

garnett_check_markers was updated to ce67c5c9a56e
garnett_classify_cells was updated to 715b020ecfb6
garnett_get_feature_genes was updated to 3176cbad2800
garnett_get_std_output was updated to 5f05e2901299
garnett_train_classifier was updated to 9be21507358d
garnett_transform_markers was updated to 1dc49d16e96c
update_marker_file was updated to 3a1cfbb8aa56

Proteomics

cardinal_classification was updated to 277dc652246e
cardinal_classification was updated to 47fc5b518ffc
cardinal_combine was updated to 525f201b86c1
cardinal_data_exporter was updated to 653e66bd9eed
cardinal_filtering was updated to a8157342d9a3
cardinal_mz_images was updated to a69865da6f80
cardinal_preprocessing was updated to 87bb011a4ee8
cardinal_quality_report was updated to 0d4d4f16d455
cardinal_segmentations was updated to b591450b3d1c
cardinal_spectra_plots was updated to ebb7de263d49

hca_sc_scpred_tools

scpred_eigen_decompose was updated to 3867289e6c1a
scpred_get_feature_space was updated to 4a77d2091aec
scpred_get_std_output was updated to 43ce84bd1d9a
scpred_predict_labels was updated to 1bc003e80986
scpred_train_model was updated to ba53e46a4275
scpred_traint_test_split was updated to a6d66c9953ed

RNA Analysis

tetoolkit_tetranscripts was updated to 2dfbcb88d16a

hca_sc_scmap_tools

scmap_index_cell was updated to 11b4b9b85b9c
scmap_index_cluster was updated to 38c6a98c7c60
scmap_scmap_cell was updated to 5e6d54e2ab89
scmap_scmap_cluster was updated to 49025c0cd5ca
scmap_select_features was updated to 139321321fdd

Phylogenetics

hyphy_absrel was updated to c78f3d7dd1db
hyphy_bgm was updated to 7fd2d1451728
hyphy_busted was updated to 686a8b41d09c
hyphy_fade was updated to bf27b3df1a4f
hyphy_fel was updated to ae95a6b22562
hyphy_fubar was updated to ff1e9dd7ad13
hyphy_gard was updated to 7a2092844346
hyphy_meme was updated to b69685ed772e
hyphy_prime was updated to e06961ac014b
hyphy_relax was updated to 2ccc579efdde
hyphy_slac was updated to 4ddef72f7f21
hyphy_sm19 was updated to c102811766ef
sarscov2formatter was updated to 1c664ff29354
sarscov2summary was updated to 4ad8b610ea41

Convert Formats

thermo_raw_file_converter was updated to 63769c4217a7

Proteomics

maxquant was updated to 2133b0be850a
proteomics_moff was updated to a96af68dafb2

Metagenomic Analysis

drep_compare was updated to ef1c257adcbd
drep_dereplicate was updated to 8dfcdbeaeed8

Nanopore

nanocompore_sampcomp was updated to 557cf45ff2c8
nanopolishcomp_eventaligncollapse was updated to ad011fc670d6
nanopolishcomp_freqmethcalculate was updated to 80b6e23cb70d

Statistics

create_tool_recommendation_model was updated to 5b3c08710e47

Imaging

cp_cellprofiler was updated to 0b8f8406ee16
cp_cellprofiler was updated to a98608f3abc5
cp_common was updated to 0b7db679fff8
cp_common was updated to 27396311a314
cp_convert_objects_to_image was updated to 2690da374874
cp_display_data_on_image was updated to 4e12ef887a2a
cp_enhance_or_suppress_features was updated to 29188f9c4ca8
cp_enhance_or_suppress_features was updated to 3f9747bda8c4
cp_export_to_spreadsheet was updated to 10257d6d545b
cp_export_to_spreadsheet was updated to 72a7f23f3a79
cp_gray_to_color was updated to bbf1ef17c01b
cp_identify_primary_objects was updated to 52c01fb29b2a
cp_image_math was updated to 6d3851ac885f
cp_mask_image was updated to 54d7d3450800
cp_mask_image was updated to ca1421f7e3ed
cp_measure_granularity was updated to 1062c9e44147
cp_measure_granularity was updated to 382413f8ec1d
cp_measure_image_area_occupied was updated to 7a08edbc790e
cp_measure_image_intensity was updated to 2681008d726f
cp_measure_image_quality was updated to 08a2cf887a44
cp_measure_object_intensity was updated to 1373b765c8f9
cp_measure_object_intensity was updated to b867e9317a06
cp_measure_object_size_shape was updated to 5c9549983af8
cp_measure_texture was updated to 0f751bb492de
cp_measure_texture was updated to 658a2a451aec
cp_relate_objects was updated to 3a2cfcd7c38a
cp_relate_objects was updated to f3f45c42bc36
cp_save_images was updated to 6e0f244acd32
cp_save_images was updated to a45d360ae9d9
projective_transformation_points was updated to a84822a0060c
idr_download_by_ids was updated to 11036f6197d6

hca_sc_monocle3_tools

monocle3_diffexp was updated to c5665e286bcf
monocle3_learngraph was updated to 6b6b5a6d4021
monocle3_ordercells was updated to 762c57e35238
monocle3_partition was updated to 60cedaee808d
monocle3_plotcells was updated to ef2dc754709c

Variant Calling

gatk4_mutect2 was updated to 287c4af133e6

RNA Analysis

chira_collapse was updated to c319651a733a
chira_extract was updated to 89ab3b2973d8
chira_map was updated to 1d3be7700f70
chira_merge was updated to 35f433d0bd7f
chira_quantify was updated to a1694947910f
seurat was updated to 82fcdf530f87
slamdunk was updated to 24657d5edede

ChemicalToolBox

ctb_frankenstein_ligand was updated to 7a4306d69801
rdock_rbcavity was updated to 06f376dc117a
rdock_rbcavity was updated to 82193638d0c5
rdock_rbdock was updated to 309fd04bcfd2
rdock_sort_filter was updated to a6ec6c55267e
rdock_sort_filter was updated to c88da0252e85
gmx_editconf was updated to 259a1b8a1a39
gmx_em was updated to dc98e5c8165a
gmx_energy was updated to 345c2a16b95f
gmx_makendx was updated to c119d1b9941b
gmx_merge_topology_files was updated to d1d0efda35c0
gmx_restraints was updated to a550cfa43262
gmx_setup was updated to 8b2553f4f114
gmx_sim was updated to 4b4232c98b6e
gmx_solvate was updated to dc2400b6361d
gmx_trj was updated to 6ac5f450ad31