UseGalaxy.eu Tool Updates for 2021-07-25
On 2021-07-25, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #284
Mapping
- bowtie2 was updated to a6d65b0c67af
- hisat2 was updated to 6c19daec423d
Proteomics
- peptideshaker was updated to a6ff76e057fd
- proteomiqon_peptidespectrummatching was updated to a79a24eb9e76
hca_sc_utils_viz
- gtf2gene_list was updated to 14b3f2a4523b
hca_sc_scanpy_tools
- anndata_ops was updated to 890fb06a2893
- scanpy_compute_graph was updated to bc9e8de21efb
- scanpy_filter_cells was updated to 55ccc0a121bc
- scanpy_filter_genes was updated to da611a744112
- scanpy_find_cluster was updated to ad6995afd2e6
- scanpy_find_markers was updated to 49653e680ea4
- scanpy_find_variable_genes was updated to 4667fe07bd68
- scanpy_integrate_bbknn was updated to 932f0f51074c
- scanpy_integrate_combat was updated to 2de673ef8c13
- scanpy_integrate_harmony was updated to bf824765919c
- scanpy_integrate_mnn was updated to 4951ff9f43db
- scanpy_normalise_data was updated to 8d9c22419c56
- scanpy_parameter_iterator was updated to 328e7846309d
- scanpy_parameter_iterator was updated to 81069608d570
- scanpy_plot_embed was updated to 56d22aa6cb3b
- scanpy_plot_trajectory was updated to d8423c3f869d
- scanpy_read_10x was updated to d253d69ff19f
- scanpy_regress_variable was updated to 36daab33aecf
- scanpy_run_diffmap was updated to e3123e51e781
- scanpy_run_dpt was updated to 8ca1de77945e
- scanpy_run_fdg was updated to 07e0163086ad
- scanpy_run_paga was updated to 7ea07327147a
- scanpy_run_pca was updated to 3ee74b58c72d
- scanpy_run_tsne was updated to 8b0d6f6f44c8
- scanpy_run_umap was updated to fe562424a0a6
- scanpy_scale_data was updated to 5605f8452eb3
Imaging
- curve_fitting was updated to 00feb1ecd040
- curve_fitting was updated to c54cf4ce6baf
- points_association_nn was updated to fd4293bee0dc
- spot_detection_2d was updated to d78372040976
Statistics
- rgcca was updated to 4e73ea176c34
RNA Analysis
- salmon was updated to 49121db48873
- salmonquantmerge was updated to 88c07fc4024c
- kallisto_pseudo was updated to 87c11c05d238
- kallisto_quant was updated to c971db6f0fe5
- ruvseq was updated to d1f7fa5bb3cb
Metagenomic Analysis
- metaeuk_easy_predict was updated to f91548912113
Assembly
- miniasm was updated to a7b889b90140
- novoplasty was updated to 64a1c751d99b
Single-cell
- alevin was updated to e4c01dcece8b
Annotation
- hmmer_alimask was updated to 80c713789d13
- hmmer_hmmalign was updated to 24fa8e890f08
- hmmer_hmmbuild was updated to dc8860ba75d1
- hmmer_hmmconvert was updated to db8a5a3195e7
- hmmer_hmmemit was updated to 96b127c59e6a
- hmmer_hmmfetch was updated to a28fd001de59
- hmmer_hmmscan was updated to be072920a53e
- hmmer_hmmsearch was updated to d753d9169482
- hmmer_jackhmmer was updated to 6e27bb3f0fa6
- hmmer_nhmmer was updated to b28e8ed99424
- hmmer_nhmmscan was updated to e07176c0925d
- hmmer_phmmer was updated to 8a791afd99fb
- tb_variant_filter was updated to 40f0591deda0
Variant Calling
- seqwish was updated to d90d8d79bca9
Get Data
- ncbi_acc_download was updated to 28587613264f
Phylogenetics
- pangolin was updated to 7bb8726be37c