US Citations

Nucleotide-level characterization and improvement of l-arabinose- and l-rhamnose-inducible systems in E. coli using a high-throughput approach

Kim, Nancy M; Peng, Danqia; Sandoval, Nicholas R

Complete genome sequence of Planococcus koreensis isolated from soil in Fort Collins, Colorado

Gruber, Paige; Freedman, Ashley; Malmstrom, Kendall; Borlee, Bradley R.; Mehaffy, Carolina

Plasmid and chromosomal sequences of Pantoea agglomerans isolated from air in Fort Collins, Colorado

Freedman, Ashley; Malmstrom, Kendall; Gruber, Paige; Borlee, Bradley R.; Mehaffy, Carolina

A time-resolved atlas of histone modifications during mitotic entry

Kochanova, Natalia Y.; Borsò, Marco; Deb, Moonmoon; Webb, Shaun; Ustun, Ipek; Samejima, Kumiko; Forne, Ignasi; Samejima, Itaru; Xie, Linfeng; Paulson, James R.; Imhof, Axel; Earnshaw, William C.

Nanopore-based sequencing of active DNA replication reveals key principles of metazoan replication fork progression, origin and termination sites

Han, Dongsheng; Shepherd, Cole; Benton, Mary Lauren; Nordman, Jared T.

Chromatin landscape, transcriptomic and ChIP-seq profiling of Anopheles stephensi MSQ43 cell line

Lukyanchikova, Varvara; Nuriddinov, Miroslav; Khabarova, Anna; Gridina, Maria; Popov, Andrey; Belokopytova, Polina; Sharakhov, Igor V.; Fishman, Veniamin

A linkage map of Aegilops biuncialis reveals significant genomic rearrangements compared to bread wheat

Lampar, Adam; Farkas, András; Ivanizs, László; Szőke-Pázsi, Kitti; Gaál, Eszter; Said, Mahmoud; Bartoš, Jan; Doležel, Jaroslav; Korol, Abraham; Valárik, Miroslav; Molnár, István

Effect of green propolis crude extract on the modulation of intestinal microbiota and on the productive performance of juvenile Nile tilapia

Zaminhan-Hassemer, Micheli; Zagolin, Gustavo Botton; Aráujo, Bruno Cavalheiro; Perazza, Caio Augusto; Barbosa, David Aciole; Menegidio, Fabiano B.; Coutinho, Luiz Lehmann; Tizioto, Polyana; Hilsdorf, Alexandre Wagner Silva

Transcriptomic shifts in Microtus ochrogaster neurogenic niches reveal psychiatric-risk pathways engaged by pair-bond formation

Ávila-González, D.; Lugo-Baca, J.; Camacho-Barrios, F.; Castro, A. E.; Arzate, D. M.; Paredes-Guerrero, R.; Díaz, N. F.; Portillo, W.

De Novo transcriptome assembly of Ligula intestinalis (Linnaeus, 1758) Gmelin, 1790 (Cestoda: Diphyllobothriidae) plerocercoids and their host, the common bream Abramis Brama L. (Cypriniformes: Leuciscidae): model for studying host-parasite interactions

Tsekova, Albina; Drozdova, Polina; Sukhovskaya, Irina; Lebedeva, Daria; Lysenko, Liudmila; Kantserova, Nadezhda

Differential tissue tropism and transmission efficiency of two dominant influenza D clades with overlapping but distinct receptor binding fine specificities in ferrets

Uprety, Tirth; Sreenivasan, Chithra C.; Yu, Jieshi; Zhao, Miaoyun; Liu, Runxia; Yu, Hai; Naveed, Ahsan; Eertink, Lianne G.; Soni, Shalini; Ruby, Rebecca E.; Chen, Xi; Kaushik, Radhey S.; Sheng, Zizhang; Li, Qingsheng; Wang, Dan; Li, Feng

MAF biodiversity measurements: Species, ecosystem, and genetic

Duganella hordei sp. nov., Duganella caerulea sp. nov., and Duganella rhizosphaerae sp. nov., isolated from barley rhizosphere

Kishiro, Katsumoto; Sahin, Nurettin; Saisho, Daisuke; Yamaji, Naoki; Yamashita, Jun; Monden, Yuki; Nakagawa, Tomoyuki; Mochida, Keiichi; Tani, Akio

Genome-Wide Temporal Gene Expression Reveals a Post-Reproductive Shift in the Nematode Caenorhabditis briggsae

Berg, Wouter; Gupta, Bhagwati P

Detection of Neorickettsia risticii in antemortem fecal and postmortem fetal samples, with genomic insights from complete genome sequencing of a strain recovered from an aborted equine fetus

Uprety, Tirth; Durazo, Jacob; Paul, Litty; Metiner, Kemal; Ruby, Rebecca; Loynachan, Alan; Janes, Jennifer; Kenndy, Laura; Cassone, Lynne; Molly, Evely; Quick, Maria; Morgan, Jocelynn; Beyhan, Sinem; Erol, Erdal

Transcriptomic Analysis of Peripheral Blood Mononuclear Cells During Ostertagia ostertagi Infection in Cattle Highlights a Generalized Host Immune Reaction

Fleming, Damarius S.; Bakshi, Mariam; Thompson, Peter; Beshah, Ethiopia; Tuo, Wenbin

Transient colonization by Priestia megaterium B1L5 alters the structure of the rhizosphere microbiome towards potential plant beneficial bacterial groups in apple plantlets

Mahmoud, Fatma M.; Edelmann, Holger; Si, Yang; Endrejat, Lea; Pritsch, Karin; Gutjahr, Caroline; Ehrenreich, Armin; Winkelmann, Traud; Winkler, Jana Barbro; Schnitzler, Jörg‑Peter; Schloter, Michael

Allele frequency selection and no age-related increase in human oocyte mitochondrial mutations

Arbeithuber, Barbara; Anthony, Kate; Higgins, Bonnie; Oppelt, Peter; Shebl, Omar; Tiemann-Boege, Irene; Chiaromonte, Francesca; Ebner, Thomas; Makova, Kateryna D.

Adhesin Als4112 promotes Candida auris skin colonization through interactions with keratinocytes and extracellular matrix proteins

Zhao, Guolei; Lyu, Jingwen; Veniaminova, Natalia A.; Zarnowski, Robert; Mattos, Eliciane; Johnson, Chad J.; Quintanilla, Derek; Hautau, Haley; Hold, LeeAnn A.; Xu, Bin; Anku, Juliet A. E.; Dasgupta, Kaustav; Hale, Joseph J.; Steltzer, Steph S.; Santana, Darian J.; Ibrahim, Ashraf S.; Snitkin, Evan S.; Andes, David; Nett, Jeniel E.; Singh, Shakti; Abraham, Adam C.; Killian, Megan L.; Kahlenberg, J. Michelle; Wong, Sunny Y.; O’Meara, Teresa R.

Exploring the genetic diversity of the 3′ untranslated region (UTR) of Dengue virus

Lo Presti, Alessandra; Knijn, Arnold; Palermo, Enrico; D’Auria, Alessandra; Quaranta, Miriana; Pascarella, Stefano; Frasca, Federica; Scagnolari, Carolina

The metabolite itaconate is a transcriptional and posttranslational modulator of plant metabolism, development, and stress response

Zhang, Tao; Klair, Amman; Tang, Ziyao; Tripka, Abigail; Luo, Shihong; Reyes, Andres V.; Lee, Jihyeon; Gundran, Katreena; Noll, Sarah E.; Wang, Xuanzhi; Zare, Richard N.; Xu, Shou-Ling; Garay-Arroyo, Adriana; Wang, Chu; Dickinson, Alexandra J.

Eomesodermin in conjunction with the BAF complex promotes expansion and invasion of the trophectoderm lineage

Bisia, Alexandra Maria; Xypolita, Maria-Eleni; Bikoff, Elizabeth K.; Robertson, Elizabeth J.; Costello, Ita

Root restriction accelerates genomic target identification in quinoa under controlled conditions

Visintainer, Davide; Sørensen, Nanna Fjord; Chen, Mengming; Trinh, Mai Duy Luu; Fonseca, Rute R.; Fondevilla, Sara; López-Marqués, Rosa L.

Native top-down proteomics enables discovery in endocrine-resistant breast cancer

Gomes, Fabio P.; Durbin, Kenneth R.; Schauer, Kevin; Nwachukwu, Jerome C.; R. Kobylski, Robin; Njeri, Jacqline W.; Seath, Ciaran P.; Saviola, Anthony J.; McClatchy, Daniel B.; Diedrich, Jolene K.; Garrett, Patrick T.; Papa, Alexandra B.; Ciolacu, Ianis; Kelleher, Neil L.; Nettles, Kendall W.; Yates, John R.

Genomic Insights into Fertilization: Tracing PLCZ1 Orthologs Across Amphibian Lineages

Bainbridge, Rachel E; Rosenbaum, Joel C; Sau, Paushaly; Carlson, Anne E

Subclonal response heterogeneity to define cancer organoid therapeutic sensitivity

Kratz, Jeremy D.; Rehman, Shujah; Johnson, Katherine A.; Gillette, Amani A.; Sunil, Aishwarya; Favreau, Peter F.; Pasch, Cheri A.; Miller, Devon; Zarling, Lucas C.; Yeung, Austin H.; Clipson, Linda; Anderson, Samantha J.; Steimle, Alyssa K.; Sprackling, Carley M.; Lemmon, Kayla K.; Abbott, Daniel E.; Burkard, Mark E.; Bassetti, Michael F.; Eickhoff, Jens C.; Foley, Eugene F.; Heise, Charles P.; Kimple, Randall J.; Lawson, Elise H.; LoConte, Noelle K.; Lubner, Sam J.; Mulkerin, Daniel L.; Matkowskyj, Kristina A.; Sanger, Cristina B.; Uboha, Nataliya V.; Mcilwain, Sean J.; Ong, Irene M.; Carchman, Evie H.; Skala, Melissa C.; Deming, Dustin A.

A two-step regulatory mechanism dynamically controls histone H3 acetylation by SAGA complex at growth-related promoters

Zencir, Sevil; Dilg, Daniel; Bruzzone, Maria Jessica; Stutz, Françoise; Soudet, Julien; Shore, David; Albert, Benjamin

The olfactory receptor OR51E2 regulates prostate cancer aggressiveness and modulates STAT3 in prostate cancer cells and in xenograft tumors

Thomsen, Mikkel Thy; Busk, Morten; Zhang, Dalin; Chiu, Chun-Lung; Zhao, Hongjuan; Garcia-Marques, Fernando Jose; Bermudez, Abel; Pitteri, Sharon; Borre, Michael; Brooks, James D.; Nyengaard, Jens Randel

Deciphering of SOX9 Functions in Pancreatic Cancer Cells

Kashkin, Kirill; Kondratyeva, Liya; Kopantzev, Eugene; Abramov, Ivan; Zhukova, Lyudmila; Chernov, Igor

Characterization of a novel zebrafish model of MTMR5-associated Charcot-Marie-Tooth disease type 4B3

Lindzon, Jordan; List, Maia; Geissah, Salma; Ariaz, Atai; Zhao, Mo; Dowling, James J

PHD-2/HIF-1α axis mediates doxorubicin-induced angiogenesis in SH-SY5Y neuroblastoma microenvironment: a potential survival mechanism

Abou-Shanab, Ahmed M.; Gaser, Ola A.; Galal, Noha; Mohamed, Alaa; Atta, Dina; Kamar, Samaa Samir; Magdy, Shireen; Khedr, Mennatallah A.; Elkhenany, Hoda; El-Badri, Nagwa

Integrated transcriptomic profiling reveals a STING-mediated Type II Interferon signature in SOD1-mutant amyotrophic lateral sclerosis models

Hiew, Jen Young; Lim, Yi Shan; Liu, Huitao; Ng, Chen Seng

Olfactory specialization in the Senegalese sole (Solea senegalensis): CO2 acidified water triggers nostril-specific immune processes

Costa, Rita A.; Hubbard, Peter; Manchado, Manuel; Power, Deborah M.; Velez, Zélia

Retrospective detection and whole genome sequencing identify the first local case of Pigeon Rotavirus A infection in Taiwan from 2018

Silva, Benji Brayan Ilagan; Urzo, Michael Louie R.; Montecillo, Andrew D.; Encabo, Jaymee R.; Chuang, Jen-Pin; Chuang, Kuo-Pin

Bio-nanocomplexes impair iron homeostasis to induce non-canonical ferroptosis in cancer cells

Wang, Xin; Zhang, Tianyi; Wang, Shuai; Shi, Hanping; Dong, Hong; Huang, Yanning; Lai, Wenjia; Hu, Yiqiao; Yue, Chunyan

Intralesional injection of CpG ODNs complexed with glatiramer acetate mitigates systemic cytokine toxicities and synergistically advances checkpoint blockade efficacy

Gong, Huan; Griffin, J. Daniel; Groer, Chad E.; Wu, Xiaoqing; Li, Mengyue; Abdelaziz, Moustafa M.; Xu, Liang; Forrest, Marcus Laird; Berkland, Cory J.

Mitochondrial genome of Amphiglena cf. mediterranea IV, a small and cryptic polychaete (Annelida: Sabellidae)

Putignano, Matteo; Tilic, Ekin

R-loops acted on by RNase H1 influence DNA replication timing and genome stability in Leishmania

Damasceno, Jeziel D.; Briggs, Emma M.; Krasilnikova, Marija; Marques, Catarina A.; Lapsley, Craig; McCulloch, Richard

Replication-IDentifier links epigenetic and metabolic pathways to the replication stress response

Horst, Sophie C.; Kollenstart, Leonie; Batté, Amandine; Keizer, Sander; Vreeken, Kees; Pandey, Praveen; Chabes, Andrei; Attikum, Haico

Genomic analysis of a spontaneous unifoliate mutant reveals gene candidates associated with compound leaf development in Vigna unguiculata [L] Walp

Edet, Offiong Ukpong; Ubi, Benjamin Ewa; Ishii, Takayoshi

Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy

Larivière, Delphine; Abueg, Linelle; Brajuka, Nadolina; Gallardo-Alba, Cristóbal; Grüning, Bjorn; Ko, Byung June; Ostrovsky, Alex; Palmada-Flores, Marc; Pickett, Brandon D.; Rabbani, Keon; Antunes, Agostinho; Balacco, Jennifer R.; Chaisson, Mark J. P.; Cheng, Haoyu; Collins, Joanna; Couture, Melanie; Denisova, Alexandra; Fedrigo, Olivier; Gallo, Guido Roberto; Giani, Alice Maria; Gooder, Grenville MacDonald; Horan, Kathleen; Jain, Nivesh; Johnson, Cassidy; Kim, Heebal; Lee, Chul; Marques-Bonet, Tomas; O’Toole, Brian; Rhie, Arang; Secomandi, Simona; Sozzoni, Marcella; Tilley, Tatiana; Uliano-Silva, Marcela; Beek, Marius; Williams, Robert W.; Waterhouse, Robert M.; Phillippy, Adam M.; Jarvis, Erich D.; Schatz, Michael C.; Nekrutenko, Anton; Formenti, Giulio

Molecular similarities between the genes for Trypanosoma cruzi microtubule-associated proteins, mammalian interferons, and TRIMs

Winkler, Martin A.; Pan, Alfred A.

Prostaglandin E2-EP2/EP4 signaling induces immunosuppression in human cancer by impairing bioenergetics and ribosome biogenesis in immune cells

Punyawatthananukool, Siwakorn; Matsuura, Ryuma; Wongchang, Thamrong; Katsurada, Nao; Tsuruyama, Tatsuaki; Tajima, Masaki; Enomoto, Yutaka; Kitamura, Toshio; Kawashima, Masahiro; Toi, Masakazu; Yamanoi, Koji; Hamanishi, Junzo; Hisamori, Shigeo; Obama, Kazutaka; Charoensawan, Varodom; Thumkeo, Dean; Narumiya, Shuh

The cytidine deaminase APOBEC3C has unique sequence and genome feature preferences

Brown, Grant W

The Hepatokine Orosomucoid 2 Mediates Beneficial Metabolic Effects of Bile Acids

Lee, Sung Ho; Suh, Ji Ho; Heo, Mi Jeong; Choi, Jong Min; Yang, Yang; Jung, Hyun-Jung; Gao, Zhanguo; Yu, Yongmei; Jung, Sung Yun; Kolonin, Mikhail G.; Cox, Aaron R.; Hartig, Sean M.; Eltzschig, Holger K.; Ju, Cynthia; Moore, David D.; Kim, Kang Ho

The genome assembly and annotation of the cricket Gryllus longicercus

Szrajer, Szymon; Gray, David; Ylla, Guillem

American lobster (Homarus americanus) hepatopancreas transcriptome reveals the significance of chitin-related genes during impoundment shell disease

Argenta, Nicolas; Rampaul, Marianna; Clark, K. Fraser

Sargassum spp. and Ascophyllum nodosum seaweed extract formulations improve plant growth and alter the bacterial dynamics in hydroponically cultivated lettuce

Ramdin, Taylor-Marie; Ali, Omar; Ramsubhag, Adesh; Jayaraman, Jayaraj

The Addition of Transcriptomics to the Bead-Enabled Accelerated Monophasic Multi-Omics Method: A Step toward Universal Sample Preparation

Breidenbach, Joshua D.; Rivera, Emilio S.; Harvey, Tara; Mikolitis, Abigale S.; Tseng, Chi Yen; Sanders, Claire K.; Solomon, Emilia; Gleasner, Cheryl D.; Thornhill, M. Grace; Luchini, Kes A.; McBride, Ethan M.; Blackwell, Brett R.; LeBrun, Erick S.; Mach, Phillip M.; Glaros, Trevor G.

Strigolactone signalling inhibits trehalose 6-phosphate signalling independently of BRC1 to suppress shoot branching

Fichtner, Franziska; Humphreys, Jazmine L.; Barbier, Francois F.; Feil, Regina; Westhoff, Philipp; Moseler, Anna; Lunn, John E.; Smith, Steven M.; Beveridge, Christine A.

The periosteum provides a stromal defence against cancer invasion into the bone

Nakamura, Kazutaka; Tsukasaki, Masayuki; Tsunematsu, Takaaki; Yan, Minglu; Ando, Yutaro; Huynh, Nam Cong-Nhat; Hashimoto, Kyoko; Gou, Qiao; Muro, Ryunosuke; Itabashi, Ayumi; Iguchi, Takahiro; Okamoto, Kazuo; Nakamura, Takashi; Nakano, Kenta; Okamura, Tadashi; Ueno, Tomoya; Ito, Kosei; Ishimaru, Naozumi; Hoshi, Kazuto; Takayanagi, Hiroshi

DNA methylation correlates of chronological age in diverse human tissue types

Jain, Niyati; Li, James L.; Tong, Lin; Jasmine, Farzana; Kibriya, Muhammad G.; Demanelis, Kathryn; Oliva, Meritxell; Chen, Lin S.; Pierce, Brandon L.

Tracking the phylogenetic profile of HEV in swine and wild boar in Europe

Koja, Gjergji; Mataj, Elida; Giuseppetti, Roberto; Villano, Umbertina; Bruni, Roberto; Ciccaglione, Anna Rita; Lo Presti, Alessandra

PPARγ activation ameliorates cognitive impairment and chronic microglial activation in the aftermath of r-mTBI

Pearson, Andrew; Koprivica, Milica; Eisenbaum, Max; Ortiz, Camila; Browning, Mackenzie; Vincennie, Tessa; Tinsley, Cooper; Mullan, Michael; Crawford, Fiona; Ojo, Joseph

A MYCN-driven de-differentiation profile identifies a subgroup of aggressive retinoblastoma

Ryl, Tatsiana; Afanasyeva, Elena; Hartmann, Till; Schwermer, Melanie; Schneider, Markus; Schröder, Christopher; Wagemanns, Maren; Bister, Arthur; Kanber, Deniz; Steenpass, Laura; Schramm, Kathrin; Jones, Barbara; Jones, David T. W.; Biewald, Eva; Astrahantseff, Kathy; Hannenberg, Helmut; Rahmann, Sven; Lohmann, Dietmar R.; Schramm, Alexander; Ketteler, Petra

Germline β−1,3-glucan deposits are required for female gametogenesis in Arabidopsis thaliana

Pinto, Sara C.; Leong, Weng Herng; Tan, Hweiting; McKee, Lauren; Prevost, Amelie; Ma, Chao; Shirley, Neil J.; Petrella, Rosanna; Yang, Xiujuan; Koltunow, Anna M.; Bulone, Vincent; Kanaoka, Masahiro M.; Higashyiama, Tetsuya; Coimbra, Sílvia; Tucker, Matthew R.

Regulation of THI and PDC genes by Pdc2 in Nakaseomyces glabratus (Candida glabrata) is complex

Dottor, Cory A.; Iosue, Christine L.; Loshnowsky, Anita M.; Hopkins, Rachael A.; Stauffer, Peyton L.; Ugras, Julia M.; Spagnuola, Jack C.; Kraut, Daniel A.; Wykoff, Dennis D.

Varroa destructor shapes the unique viral landscapes of the honey bee populations of the Azores archipelago

Lopes, Ana R.; Low, Matthew; Martín-Hernández, Raquel; Miranda, Joachim R. de; Pinto, M. Alice

Gene expression reprogramming of Pseudomonas alloputida in response to arginine through the transcriptional regulator ArgR

Molina-Henares, María Antonia; Ramos-González, María Isabel; Rinaldo, Serena; Espinosa-Urgel, Manuel

The extracellular matrix integrates mitochondrial homeostasis

Zhang, Hanlin; Tsui, C. Kimberly; Garcia, Gilberto; Joe, Larry K.; Wu, Haolun; Maruichi, Ayane; Fan, Wudi; Pandovski, Sentibel; Yoon, Peter H.; Webster, Brant M.; Durieux, Jenni; Frankino, Phillip A.; Higuchi-Sanabria, Ryo; Dillin, Andrew

Nanoparticles for inducing Gaucher disease-like damage in cancer cells

Yue, Chunyan; Lu, Wenjing; Fan, Shuxin; Huang, Zhusheng; Yang, Jiaying; Dong, Hong; Zhang, Xiaojun; Shang, Yuxin; Lai, Wenjia; Li, Dandan; Dong, Tiejun; Yuan, Ahu; Wu, Jinhui; Kang, Lifeng; Hu, Yiqiao

Prenatal nicotine exposure leads to epigenetic alterations in peripheral nervous system signaling genes in the testis of the rat

Dali, Ouzna; Muriel-Muriel, Jose Antonio; Vargas-Baco, Ana; Tevosian, Sergei; Zubcevic, Jasenka; Smagulova, Fatima; Hayward, Linda F.

Selective Pressure and Evolution of SARS-CoV-2 Lineages BF.7 and BQ.1.1 Circulating in Italy from July to December 2022

Lo Presti, Alessandra; Ambrosio, Luigina; Di Martino, Angela; Knijn, Arnold; De Sabato, Luca; Vaccari, Gabriele; Di Bartolo, Ilaria; Morabito, Stefano; Palamara, Anna Teresa; Stefanelli, Paola; Italian Genomic Laboratory

Peptide Toxins from Antarctica: The Nemertean Predator and Scavenger Parborlasia corrugatus (McIntosh, 1876)

Jacobsson, Erik; Strömstedt, Adam A.; Andersson, Håkan S.; Avila, Conxita; Göransson, Ulf

In silico biotechnological potential of Bacillus sp. strain MHSD_37 bacterial endophyte

Maumela, Pfariso; Khwathisi, Adivhaho; Madala, Ntakadzeni Edwin; Serepa-Dlamini, Mahloro Hope

In Silico Analysis of Novel Bacterial Metabolites with Anticancer Activities

Maumela, Pfariso; Serepa-Dlamini, Mahloro Hope

Exploring Variability in Rifampicin Plasma Exposure and Development of Anti-Tuberculosis Drug-Induced Liver Injury among Patients with Pulmonary Tuberculosis from the Pharmacogenetic Perspective

Kivrane, Agnija; Ulanova, Viktorija; Grinberga, Solveiga; Sevostjanovs, Eduards; Viksna, Anda; Ozere, Iveta; Bogdanova, Ineta; Zolovs, Maksims; Ranka, Renate

HvGSK1.1 Controls Salt Tolerance and Yield through the Brassinosteroid Signaling Pathway in Barley

Kloc, Yuliya; Dmochowska-Boguta, Marta; Żebrowska-Różańska, Paulina; Łaczmański, Łukasz; Nadolska-Orczyk, Anna; Orczyk, Wacław

Single molecule real-time sequencing data sets of Hypericum perforatum L. plantlets and cell suspension cultures

Selvakesavan, Rajendran K.; Nuc, Maria; Kolarčik, Vladislav; Krajewski, Paweł; Franklin, Gregory

Phage DNA Extraction, Genome Assembly, and Genome Closure

Boeckman, Justin; Liu, Mei; Ramsey, Jolene; Gill, Jason

Whole genome sequencing in the palm of your hand: how to implement a MinION Galaxy-based workflow in a food safety laboratory for rapid Salmonella spp. serotyping, virulence, and antimicrobial resistance gene identification

Lamas, Alexandre; Garrido-Maestu, Alejandro; Prieto, Alberto; Cepeda, Alberto; Franco, Carlos Manuel

Increasing complexity of opsin expression across stomatopod development

Palecanda, Sitara; Steck, Mireille; Porter, Megan L.

Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy

Guerler, Aysam; Baker, Dannon; Beek, Marius; Gruening, Bjoern; Bouvier, Dave; Coraor, Nate; Shank, Stephen D.; Zehr, Jordan D.; Schatz, Michael C.; Nekrutenko, Anton

B cells require licensing by dendritic cells to serve as primary antigen-presenting cells for plasmid DNA

Rastogi, Ichwaku; McNeel, Douglas G.

Post-feeding Molecular Responses of Cobia (Rachycentron canadum): RNA-Sequencing as a Tool to Evaluate Postprandial Effects in Hepatic Lipid Metabolism

Araújo, Bruno C.; Barbosa, David Aciole; Honji, Renato M.; Branco, Giovana S.; Menegidio, Fabiano B.; Marques, Victor H.; Moreira, Renata G.; Kitahara, Marcelo V.; Rombenso, Artur N.; Mello, Paulo H.; Hilsdorf, Alexandre W. S.

Deletion of TRPC6, an Autism Risk Gene, Induces Hyperexcitability in Cortical Neurons Derived from Human Pluripotent Stem Cells

Shin, Kyung Chul; Ali, Gowher; Ali Moussa, Houda Yasmine; Gupta, Vijay; Fuente, Alberto; Kim, Hyung-Goo; Stanton, Lawrence W.; Park, Yongsoo

The first transcriptomic analyses of fruits and cladodes for comparison between three species of Opuntia

Valadez-Moctezuma, Ernestina; Samah, Samir; Mascorro-Gallardo, J. Oscar; Marbán-Mendoza, Nahum; Aranda-Osorio, Gilberto; Flores-Girón, Emmanuel; Brito-Nájera, Guadalupe; O, José Luis

Genomic Epidemiological Analysis of Antimicrobial-Resistant Bacteria with Nanopore Sequencing

Suzuki, Masato; Hashimoto, Yusuke; Hirabayashi, Aki; Yahara, Koji; Yoshida, Mitsunori; Fukano, Hanako; Hoshino, Yoshihiko; Shibayama, Keigo; Tomita, Haruyoshi

Long-term and liver-selected ginsenoside C–K nanoparticles retard NAFLD progression by restoring lipid homeostasis

Yue, Chunyan; Li, Dandan; Fan, Shuxin; Tao, Feng; Yu, Yue; Lu, Wenjing; Chen, Qian; Yuan, Ahu; Wu, Jinhui; Zhao, Guoping; Dong, Hong; Hu, Yiqiao

The Drosophila Nab2 RNA binding protein inhibits m6A methylation and male-specific splicing of Sex lethal transcript in female neuronal tissue

Jalloh, Binta; Lancaster, Carly L; Rounds, J Christopher; Brown, Brianna E; Leung, Sara W; Banerjee, Ayan; Morton, Derrick J; Bienkowski, Rick S; Fasken, Milo B; Kremsky, Isaac J; Tegowski, Matthew; Meyer, Kate; Corbett, Anita; Moberg, Ken

Genome-wide mapping of i-motifs reveals their association with transcription regulation in live human cells

Zanin, Irene; Ruggiero, Emanuela; Nicoletto, Giulia; Lago, Sara; Maurizio, Ilaria; Gallina, Irene; Richter, Sara N

Canagliflozin mediates tumor suppression alone and in combination with radiotherapy in non-small cell lung cancer (NSCLC) through inhibition of HIF-1α

Biziotis, Olga-Demetra; Tsakiridis, Evangelia Evelyn; Ali, Amr; Ahmadi, Elham; Wu, Jianhan; Wang, Simon; Mekhaeil, Bassem; Singh, Kanwaldeep; Menjolian, Gabe; Farrell, Thomas; Abdulkarim, Bassam; Sur, Ranjan K.; Mesci, Aruz; Ellis, Peter; Berg, Tobias; Bramson, Jonathan L.; Muti, Paola; Steinberg, Gregory R.; Tsakiridis, Theodoros

Genome-wide epitope mapping across multiple host species reveals significant diversity in antibody responses to Coxiella burnetii vaccination and infection

Bach, Emil; Fitzgerald, Stephen F.; Williams-MacDonald, Sarah E.; Mitchell, Mairi; Golde, William T.; Longbottom, David; Nisbet, Alasdair J.; Dinkla, Annemieke; Sullivan, Eric; Pinapati, Richard S.; Tan, John C.; Joosten, Leo A. B.; Roest, Hendrik-Jan; Østerbye, Thomas; Koets, Ad P.; Buus, Søren; McNeilly, Tom N.

ERα/PR crosstalk is altered in the context of the ERα Y537S mutation and contributes to endocrine therapy-resistant tumor proliferation

Huggins, Rosemary J.; Greene, Geoffrey L.

A bromodomain-independent mechanism of gene regulation by the BET inhibitor JQ1: direct activation of nuclear receptor PXR

Huber, Andrew D; Poudel, Shyaron; Wu, Jing; Miller, Darcie J; Lin, Wenwei; Yang, Lei; Bwayi, Monicah N; Rimmer, Mary Ashley; Gee, Rebecca R Florke; Seetharaman, Jayaraman; Chai, Sergio C; Chen, Taosheng

Expression of Pivotal Long Non-coding RNAs Implicated in Gastric Cancer: A Bioinformatic and Clinical Study

Mohammadi, Ramtin; Zareh, Ali; Rabani, Elmira; Kheirandish Zarandi, Peyman; Khoncheh, Ahmad; Heiat, Mohammad

Molecular Evolution of Malacostracan Short Wavelength Sensitive Opsins

Palecanda, Sitara; Madrid, Elizabeth; Porter, Megan L.

INDETERMINATE1-mediated expression of FT family genes is required for proper timing of flowering in Brachypodium distachyon

Liu, Bing; Woods, Daniel P.; Li, Weiya; Amasino, Richard M.

Co-expression analysis of lncRNA and mRNA identifies potential adipogenesis regulatory non-coding RNAs involved in the transgenerational effects of tributyltin

Lopes, Maria Fernanda da Silva; Felix, Juliana de Souza; Scaramele, Natália Francisco; Almeida, Mariana Cordeiro; Furlan, Amanda de Oliveira; Troiano, Jéssica Antonini; Athayde, Flávia Regina Florêncio de; Lopes, Flávia Lombardi

Sequential infection of human norovirus and Salmonella enterica resulted in higher mortality and ACOD1/IRG1 upregulation in zebrafish larvae

Toh, Jillinda Yi Ling; Zwe, Ye Htut; Tan, Malcolm Turk Hsern; Gong, Zhiyuan; Li, Dan

Integrating transcriptomic datasets across neurological disease identifies unique myeloid subpopulations driving disease-specific signatures

Wishart, Claire L.; Spiteri, Alanna G.; Locatelli, Giuseppe; King, Nicholas J. C.

MYCN Amplifications and Metabolic Rewiring in Neuroblastoma

Pouliou, Marialena; Koutsi, Marianna A.; Champezou, Lydia; Giannopoulou, Angeliki-Ioanna; Vatsellas, Giannis; Piperi, Christina; Agelopoulos, Marios

Evolutionary history of Staphylococcus aureus influences antibiotic resistance evolution

Fait, Anaëlle; Andersson, Dan I.; Ingmer, Hanne

Systemic proteome phenotypes reveal defective metabolic flexibility in Mecp2 mutants

Zlatic, Stephanie A; Werner, Erica; Surapaneni, Veda; Lee, Chelsea E; Gokhale, Avanti; Singleton, Kaela; Duong, Duc; Crocker, Amanda; Gentile, Karen; Middleton, Frank; Dalloul, Joseph Martin; Liu, William Li-Yun; Patgiri, Anupam; Tarquinio, Daniel; Carpenter, Randall; Faundez, Victor

Extracellular matrix drives tumor organoids toward desmoplastic matrix deposition and mesenchymal transition

Tienderen, Gilles S; Rosmark, Oskar; Lieshout, Ruby; Willemse, Jorke; Weijer, Floor; Elowsson Rendin, Linda; Westergren-Thorsson, Gunilla; Doukas, Michail; Groot Koerkamp, Bas; Royen, Martin E; Laan, Luc JW; Verstegen, Monique MA

The ClpX protease is essential for inactivating the CI master repressor and completing prophage induction in Staphylococcus aureus

Thabet, Mohammed A.; Penadés, José R.; Haag, Andreas F.

The New Nematicide Cyclobutrifluram Targets the Mitochondrial Succinate Dehydrogenase Complex in Caenorhabditis elegans

Heydari, Fariba; Rodriguez-Crespo, David; Wicky, Chantal

Diversity of arbuscular mycorrhizal fungi in seleniferous soils and their role in plant growth promotion

Kaur, Tanveer; Reddy, M. Sudhakara

A Galaxy of informatics resources for MS-based proteomics

Mehta, Subina; Bernt, Matthias; Chambers, Matthew; Fahrner, Matthias; Föll, Melanie Christine; Gruening, Bjoern; Horro, Carlos; Johnson, James E.; Loux, Valentin; Rajczewski, Andrew T.; Schilling, Oliver; Vandenbrouck, Yves; Gustafsson, Ove Johan Ragnar; Thang, W. C. Mike; Hyde, Cameron; Price, Gareth; Jagtap, Pratik D.; Griffin, Timothy J.

A Candida auris–specific adhesin, Scf1, governs surface association, colonization, and virulence

Santana, Darian J.; Anku, Juliet A. E.; Zhao, Guolei; Zarnowski, Robert; Johnson, Chad J.; Hautau, Haley; Visser, Noelle D.; Ibrahim, Ashraf S.; Andes, David; Nett, Jeniel E.; Singh, Shakti; O’Meara, Teresa R.

Reovirus genomic diversity confers plasticity for protease utility during adaptation to intracellular uncoating

Lin, Qi Feng; Wong, Casey X. L.; Eaton, Heather E.; Pang, Xiaoli; Shmulevitz, Maya

Molecular mechanisms of TWIST1-regulated transcription in EMT and cancer metastasis

Yu, Xiaobin; He, Tao; Tong, Zhangwei; Liao, Lan; Huang, Shixia; Fakhouri, Walid D.; Edwards, Dean P.; Xu, Jianming

The de novo transcriptome assembly of Agave angustifolia Haw, mining for carbohydrates and cellulose synthesis genes profiling, and molecular markers development

Valadez-Moctezuma, Ernestina; Samah, Samir; Mascorro-Gallardo, J. Oscar; Reynoso, José J. López; Marbán-Mendoza, Nahum; Aranda-Osorio, Gilberto; Brito-Nájera, Guadalupe

TRAIP resolves DNA replication-transcription conflicts during the S-phase of unperturbed cells

Scaramuzza, Shaun; Jones, Rebecca M.; Sadurni, Martina Muste; Reynolds-Winczura, Alicja; Poovathumkadavil, Divyasree; Farrell, Abigail; Natsume, Toyoaki; Rojas, Patricia; Cuesta, Cyntia Fernandez; Kanemaki, Masato T.; Saponaro, Marco; Gambus, Agnieszka

Cardiomyocyte proliferation is suppressed by ARID1A-mediated YAP inhibition during cardiac maturation

Boogerd, Cornelis J.; Perini, Ilaria; Kyriakopoulou, Eirini; Han, Su Ji; La, Phit; Swaan, Britt; Berkhout, Jari B.; Versteeg, Danielle; Monshouwer-Kloots, Jantine; Rooij, Eva

Molecular Dynamics and Simulation Analysis against Superoxide Dismutase (SOD) Target of Micrococcus luteus with Secondary Metabolites from Bacillus licheniformis Recognized by Genome Mining Approach

Bagewadi, Zabin K.; Yunus Khan, T. M.; Gangadharappa, Bhavya; Kamalapurkar, Ankita; Mohamed Shamsudeen, Shaik; Yaraguppi, Deepak A.

The circadian clock protein Cryptochrome 1 is a direct target and feedback regulator of the Hippo pathway

Azzi, Abdelhalim; Tao, Zhipeng; Sun, Yang; Erb, Hannah; Guarino, Carla; Wu, Xu

Pancreatic tumors exhibit myeloid-driven amino acid stress and upregulate arginine biosynthesis

Apiz Saab, Juan J; Dzierozynski, Lindsey N; Jonker, Patrick B; AminiTabrizi, Roya; Shah, Hardik; Menjivar, Rosa Elena; Scott, Andrew J; Nwosu, Zeribe C; Zhu, Zhou; Chen, Riona N; Oh, Moses; Sheehan, Colin; Wahl, Daniel R; Magliano, Marina; Lyssiotis, Costas A; Macleod, Kay F; Weber, Christopher R; Muir, Alexander

Assessment of Amikacin- and Capreomycin-Related Adverse Drug Reactions in Patients with Multidrug-Resistant Tuberculosis and Exploring the Role of Genetic Factors

Freimane, Lauma; Barkāne, Linda; Kivrane, Agnija; Sadovska, Darja; Ulanova, Viktorija; Ranka, Renāte

Delayed boosting improves human antigen-specific Ig and B cell responses to the RH5.1/AS01_B malaria vaccine

Nielsen, Carolyn M.; Barrett, Jordan R.; Davis, Christine; Fallon, Jonathan K.; Goh, Cyndi; Michell, Ashlin R.; Griffin, Catherine; Kwok, Andrew; Loos, Carolin; Darko, Samuel; Laboune, Farida; Tekman, Mehmet; Diouf, Ababacar; Miura, Kazutoyo; Francica, Joseph R.; Ransier, Amy; Long, Carole A.; Silk, Sarah E.; Payne, Ruth O.; Minassian, Angela M.; Lauffenburger, Douglas A.; Seder, Robert A.; Douek, Daniel C.; Alter, Galit; Draper, Simon J.

Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors

Feng, Siqian; Rastogi, Chaitanya; Loker, Ryan; Glassford, William J.; Tomas Rube, H.; Bussemaker, Harmen J.; Mann, Richard S.

Association of DNA methylation and genetic variations of the APOE gene with the risk of diabetic dyslipidemia

Ereqat, Suheir; Cauchi, Stéphane; Eweidat, Khaled; Elqadi, Muawiyah; Ghatass, Manal; Sabarneh, Anas; Nasereddin, Abedelmajeed

The TRRAP transcription cofactor represses interferon-stimulated genes in colorectal cancer cells

Detilleux, Dylane; Raynaud, Peggy; Pradet-Balade, Berengere; Helmlinger, Dominique

Adding an essential oil blend to the diet of juvenile Nile tilapia improves growth and alters the gut microbiota

Zaminhan-Hassemer, Micheli; Zagolin, Gustavo Botton; Perazza, Caio Augusto; Aciole Barbosa, David; Menegidio, Fabiano B.; Coutinho, Luiz Lehmann; Tizioto, Polyana; Hilsdorf, Alexandre Wagner Silva

Transcriptomic changes induced by applications of a commercial extract of Ascophyllum nodosum on tomato plants

Ali, Omar; Ramsubhag, Adesh; Daniram Benn Jr. Ramnarine, Stephen; Jayaraman, Jayaraj

Ready-to-use public infrastructure for global SARS-CoV-2 monitoring

Maier, Wolfgang; Bray, Simon; Beek, Marius; Bouvier, Dave; Coraor, Nathan; Miladi, Milad; Singh, Babita; De Argila, Jordi Rambla; Baker, Dannon; Roach, Nathan; Gladman, Simon; Coppens, Frederik; Martin, Darren P.; Lonie, Andrew; Grüning, Björn; Kosakovsky Pond, Sergei L.; Nekrutenko, Anton

Transcriptomic profiling identifies novel transcripts, isomorphs, and noncoding RNAs in Paracoccidioides brasiliensis

Menegidio, Fabiano B; Aciole Barbosa, David; Alencar, Valquíria C; Vilas Boas, Renata O; Oliveira, Regina; Jabes, Daniela L; Nunes, Luiz R

The Quorum Sensing Auto-Inducer 2 (AI-2) Stimulates Nitrogen Fixation and Favors Ethanol Production over Biomass Accumulation in Zymomonas mobilis

Alencar, Valquíria Campos; Silva, Juliana de Fátima dos Santos; Vilas Boas, Renata Ozelami; Farnézio, Vinícius Manganaro; Maria, Yara N. L. F.; Aciole Barbosa, David; Almeida, Alex Tramontin; Souza, Emanuel Maltempi; Müller-Santos, Marcelo; Jabes, Daniela L.; Menegidio, Fabiano B.; Oliveira, Regina; Rodrigues, Tiago; Tersariol, Ivarne Luis dos Santos; Walmsley, Adrian R.; Nunes, Luiz R.

Fast and accurate genome-wide predictions and structural modeling of protein-protein interactions using Galaxy

Guerler, Aysam; Baker, Dannon; Beek, Marius van den; Bouvier, Dave; Coraor, Nate; Schatz, Michael C.; Nekrutenko, Anton

Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring

Maier, Wolfgang; Bray, Simon; Beek, Marius van den; Bouvier, Dave; Coraor, Nathaniel; Miladi, Milad; Singh, Babita; Argila, Jordi Rambla De; Baker, Dannon; Roach, Nathan; Gladman, Simon; Coppens, Frederik; Martin, Darren; Lonie, Andrew; Gruning, Bjorn; Pond, Sergei Kosakovsky; Nekrutenko, Anton

Using Galaxy to Perform Large-Scale Interactive Data Analyses—An Update

Ostrovsky, Alexander; Hillman‐Jackson, Jennifer; Bouvier, Dave; Clements, Dave; Afgan, Enis; Blankenberg, Daniel; Schatz, Michael C.; Nekrutenko, Anton; Taylor, James; Team, the Galaxy; Lariviere, Delphine

A Pipeline for Non-model Organisms for de novo Transcriptome Assembly, Annotation, and Gene Ontology Analysis Using Open Tools: Case Study with Scots Pine

Duarte, Gustavo T.; Volkova, Polina Yu; Geras’kin, Stanislav A.

Galactic Circos: User-friendly Circos plots within the Galaxy platform

Rasche, Helena; Hiltemann, Saskia

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update

Jalili, Vahid; Afgan, Enis; Gu, Qiang; Clements, Dave; Blankenberg, Daniel; Goecks, Jeremy; Taylor, James; Nekrutenko, Anton

Laniakea: an open solution to provide Galaxy “on-demand” instances over heterogeneous cloud infrastructures

Tangaro, Marco Antonio; Donvito, Giacinto; Antonacci, Marica; Chiara, Matteo; Mandreoli, Pietro; Pesole, Graziano; Zambelli, Federico

Systematic Reconstruction of the Complete Two-Component Sensorial Network in Staphylococcus aureus

Rapun-Araiz, B.; Haag, A. F.; De Cesare, V.; Gil, C.; Dorado-Morales, P.; Penades, J. R.; Lasa, I.

Next generation sequencing study on RNA viruses of Vespa velutina and Apis mellifera sharing the same foraging area

Marzoli, Filippo; Forzan, Mario; Bortolotti, Laura; Pacini, Maria Irene; Rodríguez‐Flores, María Shantal; Felicioli, Antonio; Mazzei, Maurizio

An Intermediate Data-driven Methodology for Scientific Workflow Management System to Support Reusability

Chakroborti, Debasish

Plant Adaptation and Tolerance to Environmental Stresses: Mechanisms and Perspectives

Raza, Ali; Ashraf, Farwa; Zou, Xiling; Zhang, Xuekun; Tosif, Hassan

Rhizosphere microbiome: Engineering bacterial competitiveness for enhancing crop production

Kumar, Ashwani; Dubey, Anamika

Family reunion via error correction: an efficient analysis of duplex sequencing data

Stoler, Nicholas; Arbeithuber, Barbara; Povysil, Gundula; Heinzl, Monika; Salazar, Renato; Makova, Kateryna D.; Tiemann-Boege, Irene; Nekrutenko, Anton

Widespread correlation of KRAB zinc finger protein binding with brain-developmental gene expression patterns

Farmiloe, Grace; Lodewijk, Gerrald A.; Robben, Stijn F.; Bree, Elisabeth J.; Jacobs, Frank M. J.

Going low to reach high: Small-scale ChIP-seq maps new terrain

Fosslie, Madeleine; Manaf, Adeel; Lerdrup, Mads; Hansen, Klaus; Gilfillan, Gregor D.; Dahl, John Arne

Scalable Data Analysis in Proteomics and Metabolomics Using BioContainers and Workflows Engines

Perez‐Riverol, Yasset; Moreno, Pablo

Accessible and reproducible mass spectrometry imaging data analysis in Galaxy

Föll, Melanie Christine; Moritz, Lennart; Wollmann, Thomas; Stillger, Maren Nicole; Vockert, Niklas; Werner, Martin; Bronsert, Peter; Rohr, Karl; Grüning, Björn Andreas; Schilling, Oliver

Chaperone-mediated ordered assembly of the SAGA and NuA4 transcription co-activator complexes in yeast

Elías-Villalobos, Alberto; Toullec, Damien; Faux, Céline; Séveno, Martial; Helmlinger, Dominique

Analysis of Genotype Composition of Citrus tristeza virus Populations Using Illumina Miseq Technology

Read, David A.; Pietersen, Gerhard

Predicting runtimes of bioinformatics tools based on historical data: Five years of Galaxy usage

Tyryshkina, Anastasia; Coraor, Nate; Nekrutenko, Anton

Understanding antimicrobial discovery and resistance from a metagenomic and metatranscriptomic perspective: Advances and applications

Asante, Jonathan; Sekyere, John Osei

Tools for Understanding miRNA–mRNA Interactions for Reproducible RNA Analysis

Bagnacani, Andrea; Wolfien, Markus; Wolkenhauer, Olaf

Bioinformatic Strategies for the Genomic and Epigenomic Characterization of Brain Tumors

Ramaswamy, Vijay; Taylor, Michael D.

Biology needs evolutionary software tools: Let’s build them right

Nekrutenko, Anton; Team, Galaxy; Goecks, Jeremy; Taylor, James; Blankenberg, Daniel

Community-Driven Data Analysis Training for Biology

Batut, Bérénice; Hiltemann, Saskia; Bagnacani, Andrea; Baker, Dannon; Bhardwaj, Vivek; Blank, Clemens; Bretaudeau, Anthony; Brillet-Guéguen, Loraine; Čech, Martin; Chilton, John; Clements, Dave; Doppelt-Azeroual, Olivia; Erxleben, Anika; Freeberg, Mallory Ann; Gladman, Simon; Hoogstrate, Youri; Hotz, Hans-Rudolf; Houwaart, Torsten; Jagtap, Pratik; Larivière, Delphine; Corguillé, Gildas Le; Manke, Thomas; Mareuil, Fabien; Ramírez, Fidel; Ryan, Devon; Sigloch, Florian Christoph; Soranzo, Nicola; Wolff, Joachim; Videm, Pavankumar; Wolfien, Markus; Wubuli, Aisanjiang; Yusuf, Dilmurat; Taylor, James; Backofen, Rolf; Nekrutenko, Anton; Grüning, Björn

Genomic Advances in Root Vegetable Crops

Selvakumar, R.; Singh Jat, Gograj; Nabi, Sajad Un; Malik, Geetika; Gangadhara, K.; Pradeepika, Chintha

Functions of long non-coding RNAs in plants: a riddle to explore

Singh, Pankaj Kumar; Ganguli, Sayak; Pal, Amita

Cloud computing for genomic data analysis and collaboration

Langmead, Ben; Nellore, Abhinav

Koala: sistema para integração de métodos de predição e análise de estruturas de proteína

Defelicibus, Alexandre

Adult organotypic brain slice cultures recapitulate extracellular matrix remodelling in haemorrhagic stroke | bioRxiv

The TET3/GATA6 Axis Drives Lipid Metabolism and Therapeutic Vulnerabilities in Pancreatic Ductal Adenocarcinoma

Liu, Shuai; Kang, Shaobo; Lin, Na; Zhang, Wenqi; Wang, Shiwen; Ren, Yuqing; Ding, Xiaofan; Yu, Jianxiu; Xie, Ruiyu

Gentamicin induction of the gonococcal hicAB toxin-antitoxin encoding system and impact on gene expression influencing biofilm formation and in vivo fitness in a strain-specific manner | bioRxiv

Companion Animals as Reservoirs of Multidrug Resistance—A Rare Case of an XDR, NDM-1-Producing Pseudomonas aeruginosa Strain of Feline Origin in Greece

Characterizing temporal and global host innate immune responses against SARS-CoV-1 and -2 infection in pathologically relevant human lung epithelial cells | PLOS ONE

Shifts in plant functional trait dynamics in relation to soil microbiome in modern and wild barley

Kumar, Amit; Kuznetsova, Olga; Gschwendtner, Silvia; Chen, Hao; Alonso-Crespo, Inés M.; Yusuf, Mohammad; Schulz, Stefanie; Bonkowski, Michael; Schloter, Michael; Temperton, Vicky M.

Fish antifreeze protein origin in sculpins by frameshifting within a duplicated housekeeping gene

Graham, Laurie A.; Davies, Peter L.

The actin-binding protein CAP1 represses MRTF-SRF–dependent gene expression in mouse cerebral cortex | Science Signaling

Genome-wide identification and expression analysis of heat shock protein gene family in cassava

Wang, Changyi; Ran, Fangfang; Zang, Yuwei; Liu, Liangwang; Wang, Dayong; Min, Yi

A comprehensive analysis of gene expression profiling data in COVID-19 patients for discovery of specific and differential blood biomarker signatures | Scientific Reports

B-cell-specific checkpoint molecules that regulate anti-tumour immunity | Nature

Geomicrobiological characterization of the evaporitic ecosystem in the hypersaline lake Laguna Verde (Andean Puna, Northwestern Argentina)

Frontiers | Salmonella gallinarum strains from outbreaks of fowl typhoid fever in Southern Africa closely related to SG9R vaccines