Erasmus MC

Public server:
Scope:
Summary:General purpose genomics analysis, featuring many standard tools plus many additional tools.

Comments

  • This server supports a wealth of RNA-Seq tasks, including: quantify gene expression (featureCounts, edgeR, experimental design module) determine and prioritize fusion genes (star-fusion, Fuma, ifuse) determine variants and annotate small variants (BAM to varscan2, Annovar) detect small ncRNA derived RNAs in small RNA-seq alignments (Flaimapper) Generate html user defined workflow (iReport) All tools are also available in the Tool Shed.

User Support

  • To inquire about this Galaxy server, increasing your disk quotum, or possibilities for collaborative projects, please contact one of our team.

Quotas

  • This Galaxy instance may be used without registration, but guests' histories are deleted nightly. To request an account, please contact the Bioinformatics department.

Citations

Sponsors