Galaxy Freiburg
The homepage of the Freiburg Galaxy community
Galaxy is an open-source platform for FAIR data analysis that enables users to:
- use tools from various domains (that can be plugged into workflows) through its graphical web interface.
- run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
- manage data by sharing and publishing results, workflows, and visualizations.
- ensure reproducibility by capturing the necessary information to repeat and understand data analyses.
The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.
News
IRCCS AOUBO Hospital in Bologna leverages Galaxy Project for diagnosing rare diseases
The Galaxy Project has found its way into the practices of a leading medical institution in Bologna, Italy
We are thrilled to announce, that thanks to the help of the Bioconductor community, we could deploy the Shiny phyloseq App as an interactive tool (IT) on usegalaxy.eu
Tune in for exciting updates from GCC2024, the latest Galaxy release, and more in this edition of the Galaxy Newsletter!
Discover the highlights from GCC2024, where the Galaxy community gathered in Brno to share insights, innovations, and collaborations.
Traefik Reverse Proxy for High Availablilty
A reverse proxy and loadbalancer for two headnode setup at Galaxy Europe
Events
Jul 22 - Jul 26Workshop on high-throughput sequencing data analysis with Galaxy
This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.
Join us for a hands-on virtual workshop designed to introduce you to essential bioinformatics skills using Galaxy—perfect for beginners and those looking to refresh their knowledge.
Sep 10 - Sep 13A practical introduction to bioinformatics and RNA-seq using Galaxy
Ready to explore the fascinating world of RNA-seq data analysis using Galaxy? Don't miss out on this incredible opportunity! Visit our event webpage now to discover the program details, meet the organising team, and submit your application.
Oct 8 - Oct 10Gateways 2024
Help bridge the connection between science and gateways, such as Galaxy.
Our services
The Freiburg Galaxy Team is offering several services to enable reproducible and accessible research for everyone:
Training
We regularly provide workshops.
But we cannot always meet capacity, so we've put all of our training materials online. This has become a community project with people from all over the world contributing training materials.
Topics include: variant analysis, transcriptomics, metagenomics, epigenetics, and many more!
Acknowledgements
We are aiming to maintain high competency and provide high-quality data analysis services to all our Galaxy users.
Therefore, we request that you acknowledge this service by including the members of the Freiburg Galaxy Team as co-authors if they have made a significant intellectual and/or organizational contribution to the work described (conceptualization, design, data analysis, data interpretation and/or input into drafting, revising or writing any portion of the manuscript).
Individuals who have contributed to the project, but whose contributions do not rise to the level justifying authorship, can be recognized in the acknowledgements section of the manuscript as follows:
The authors acknowledge the support of the Freiburg Galaxy Team: Person X and Prof. Rolf Backofen, Bioinformatics, University of Freiburg, Germany funded by Collaborative Research Centre 992 Medical Epigenetics (DFG grant SFB 992/1 2012) and the German Federal Ministry of Education and Research (BMBF grant 031 A538A de.NBI-RBC).
Additional funding of projects and/or provision of material expenses are welcome as well, to help support our growing Galaxy community in Freiburg.