Welcome to Galaxy Proteomics
Galaxy Proteomics is a multiple-‘omics’ data-analysis platform with particular emphasis on mass spectrometry-based proteomics. It is hosted by GalaxyEU and maintained by the GalaxyP team from the University of Minnesota, USA.
GalaxyP Resources
Content
Tutorials
Are you new to Galaxy, or returning after a long time, and looking for help to get started? Take a guided tour through Galaxy’s user interface.
Want to learn more about proteomics? Check out the following lesson tutorials from the Galaxy Training Network:Gateways
Other specialized Galaxy servers curated by the Galaxy-P team containing tools, workflows, and hands-on/video tutorials.
Research Projects
Featured Galaxy-P tools supported with manuscripts, visualization plugins, docker containers, and hands-on tutorials.
| Tool | Description | Paper | Tutorial | Docker |
|---|---|---|---|---|
| CRAVAT-P | Stands for Cancer Related Analysis of Variants Toolkit for Proteogenomics. Submits, checks for, and retrieves data for cancer annotation | Sajulga et. al 2018 | Docker | |
| QuanTP | Correlation between protein and transcript | Kumar et. al 2019 | Docker | |
| MetaQuantome | Quantitative analysis of the function and taxonomy of microbiomes and their interaction |
News and Events
- Galaxy Training Academy 2026: A Global Week of Learning
- Galaxy Europe Goes Ocean: Ready for Ocean Hackathon 2026! 48 hours, ocean data and fresh ideas! Galaxy Europe's Earth System Sciences platform joins the Ocean Hackathon adventure.
- ESG4Stars project launched Efficient start of the ESG4Stars project with kick-off meeting, general assembly and first collaborative working days all in one week
- LangChain Text Splitters, the Missing Link when Processing Long Texts with LLMs Circumvent context window limits of LLMs by splitting long texts into manageable chunks
- AI4SOCIAL+ Online Kickoff AI4SOCIAL+ project kickoff meeting on 1st October 2026 online
- Workshop: Sustainable research computing with Galaxy: Workflows, infrastructure and practice Nov 19 - Nov 20Two-day workshop in Madrid exploring how research workflows can be made more sustainable (19-20 November). Registration open now
- Galaxy and AI in small subjects Nov 19 - Nov 20 · Mainz
- Introduction to the Data Analysis Platform Galaxy (in German) Dec 2 · Freiburg, Germany
- Workshop on high-throughput sequencing data analysis with Galaxy Mar 1 - Mar 5 · Freiburg im Breisgau, GermanyThis course introduces scientists to the data analysis platform Galaxy
- Workflow4Experimenters 2027 Apr 5 - Apr 30 · Rennes, FranceAnalyze your data with Galaxy and the Workflow4Metabolomics infrastructure! During this one-week-long on-site course (preceded by half-a-week of webinars), you will learn how to use the W4M-promoted Galaxy tools for metabolomics, and analyze your own LC-MS, GC-MS or NMR data through tutoring sessions.
Contributors
Our Data Policy
| Registered Users | Unregistered Users | FTP Data | GDPR Compliance |
|---|---|---|---|
| For all different storage options, for detailed explanations of data retention policies, and ways how to increase your quota please refer to our dedicated storage site. | Processed data will only be accessible during one browser session, using a cookie to identify your data. This cookie is not used for any other purposes (e.g. tracking or analytics). If UseGalaxy.eu service is not accessed for 90 days, those datasets will be permanently deleted. | Any user data uploaded to our FTP server should be imported into Galaxy as soon as possible. Data left in FTP folders for more than 3 months, will be deleted. | The Galaxy service complies with the EU General Data Protection Regulation (GDPR). You can read more about this on our Terms and Conditions. |