ELIXIR-FR/IFB Galaxy Event Archive

Topics in machine learning and complex systems supporting biomedical research.

The 2nd BioHackaton Germany will take palce in Bielefeld and has 11 exciting projects.

A 4-day workshop to learn how to programm in Python3 for individuals who have limited or no prior programming experience. The initial 3 days are dedicated to introducing participants to fundamental concepts of Python programming. This foundation will empower participants to independently engage and gradually improve their computing skills. Close the workshop with a brief introduction of GitLab, with an exploration of Jupyter Book and guidance on hosting a website using GitLab.

In this workshop, scientists learn single-cell data analysis using Galaxy. There is no requirement of any programming skills.

European Galaxy Community meeting in Autumn

microGalaxy is a communities of practice focusing on microbial data analysis with Galaxy

A forum to share updates and discuss community-wide topics

Ready to explore the fascinating world of RNA-seq data analysis using Galaxy? Curious about the diverse data types and databases utilised in bioinformatics? Don't miss out on this incredible opportunity! Visit our event webpage now to discover the program details, meet the organising team, and submit your application.

Tips and tricks for using Galaxy

This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.

Meeting once every 5 years, and right on the heels of GCC2023 in a nearby location, come and check out this year's conference theme: Genetics and Genomics - Linking Life and Society.

The annual gathering of the Galaxy Community with opportunities to hear latest developments, get training, and meet everyone involved.

A forum to share updates and discuss community-wide topics

A forum to share updates and discuss community-wide topics

This course introduces trainers to learning principles, training techniques, lesson, session, course, and material design as well as assessment and feedback. This course is has been developed for by trainers in the bioinformatics but is suitable for all trainers and educators in higher education.

A forum to share updates and discuss community-wide topics

A forum to share updates and discuss community-wide topics.

FAIR-EASE and EuroScienceGateway join forces

A forum to share updates and discuss community-wide topics

microGalaxy is a communities of practice focusing on microbial data analysis with Galaxy

A forum to share updates and discuss community-wide topics

A forum to share updates and discuss community-wide topics.

A forum to share updates and discuss community-wide topics

A forum to share updates and discuss community-wide topics

This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.

A forum to share updates and discuss community-wide topics

microGalaxy is a communities of practice focusing on microbial analysis with Galaxy

Participants will be guided through the droplet-based scRNA-seq analysis pipelines from raw reads to trajectories.

The purpose of this workshop is to gain knowledge on detect (foodborne) pathogens from (direct Nanopore) sequencing data using Galaxy. The workshop will be on February 2nd 2023 as a 1-day hybrid (F2F at FHNW Muttenz, Switzerland and online), free and practical workshop.

A forum to share updates and discuss community-wide topics

Assemble and analyze a reference-quality genome in Galaxy

A forum to share updates and discuss community-wide topics

A forum to share updates and discuss community-wide topics

BioHackathon activities are driven by practical sessions where people gather, discuss, and implement ideas and projects during intensive and productive coding sessions

Learn how to use Galaxy in YOUR research

A forum to share updates and discuss community-wide topics

Image analysis using Galaxy

A forum to share updates and discuss community-wide topics

Online video tutorials about the use of cloud computing resources for MS-based proteomics.

European Galaxy Community meeting in Autumn

A forum to share updates and discuss community-wide topics

A forum to share updates and discuss community-wide topics

A forum to share updates and discuss community-wide topics

A forum to share updates and discuss community-wide topics

A forum to share updates and discuss community-wide topics

This course will introduce you to SARS-CoV-2 bioinformatics pipelines. Learn how to use the web-based tool Galaxy for bioinformatics analyses, including how to input and process data, build a pipeline, and use existing workflows.

The annual gathering of the Galaxy Community

A forum to share updates and discuss community-wide topics

iRODS 2022 User Group Meeting

A forum to share updates and discuss community-wide topics

Applications close 8 March

A forum to share updates and discuss community-wide topics

Talk at the ELIXIR All Hands 2022

Talk at the ELIXIR All Hands 2022

Workshop at the ELIXIR All Hands 2022

Workshop at the ELIXIR All Hands 2022

Workshop at the ELIXIR All Hands 2022

Workshop at the ELIXIR All Hands 2022

Members of the ELIXIR Galaxy Community, Tools Platform and the Biodiversity Focus Group will introduce the Vertebrate Genomes Project (VGP) and European Reference Genome Atlas (ERGA) initiatives.

Workshop at the ELIXIR All Hands 2022

Workshop at the ELIXIR All Hands 2022

Dan Blankenberg will present 'How to create and use Galaxy Interactive Tools'

A forum to share updates and discuss community-wide topics

Applications close 18 February

A community contribution day

The Galaxy Proteomics communities in the US, Australia and Europe regularly come together online to talk about topics of shared interest. All are welcome!

A forum to share updates and discuss community-wide topics

A forum to share updates and discuss community-wide topics

This course will give a general introduction on the galaxy web-page structure, how to import data, run tools, and share analyses. Participants will run a whole NGS analysis using an RNA-seq dataset as an example.

Microbiome analysis going from samples, to sequencing, to numerical ecology analysis

Get a taste of all the GTN has to offer!

Applications close 31 December

A community contribution day

Register by December 15

...upload viral sequencing data, call all variants, create a variety of reports and create consensus alignments...

A 3-day training course on bioinformatics methods for de novo assembly and structural and functional annotation of genomes using short (Illumina) and long reads (PacBio / Oxford Nanopore) sequencing technologies (will be run in french).

Learn to work with NGS data of 16S, 18S, ITS … DNA using our Galaxy instance and the FROGS pipeline.

Curso de análisis de células únicas usando Galaxy en español.

Recent developments and future plans in the Galaxy Metabolomics community, including a summary of the metaRbolomics Hackathon.

A community contribution day

Join the discsussion (Slides: 21.09 Release Testing)

Advance the development of an open-source infrastructure for data integration

Open to everybody interested in Genome Annotation or Galaxy

Course is full

Join the discussion. (Video, Slides)

Gallantries Project: Delivering Galaxy hybrid events, and evolving with the pandemic

Talk showcasing the image analysis capabilities of Galaxy.

A community contribution day

Organised by the Galaxy Proteomics communities in the US, Australia and Europe.

Savoir utiliser l'environnement Galaxy

microGalaxy is a new community focusing on microbial analysis with Galaxy

A community contribution day

Part of Cycle "Bioinformatique par la pratique" 2021

Part of Cycle "Bioinformatique par la pratique" 2021

...upload viral sequencing data, call all variants, create a variety of reports and create consensus alignments...

Open, reliable, and transparent ecology research with Galaxy-E

GCC Cofest prep is pre-empting the June Papercuts day

Showcasing the image analysis capabilities of Galaxy.

Register by 14 April (Video)

Gathering the Dutch Galaxy Community

Full. Part of Cycle "Bioinformatique par la pratique" 2021

What's changed recently, and what's involved (Video, Slides)

Full. Part of Cycle "Bioinformatique par la pratique" 2021

Part of the Galaxy Resources Webinar Series (Slides, Video)

Full. Theoretical and practical aspects of using next generation sequencing (NGS) data for analyzing repeat composition of plant genomes. (Register)

Introduction to basic concepts and tools from the ASaiM-MT workflow.

A community contribution day

Giving new users some obvious guidance when they first arrive. (Video, Slides)

Part of the Galaxy Resources Webinar Series (Video, Ecosystem slides, Docker slides, Server slides)

Savoir utiliser l'environnement Galaxy

(Slides, Video)

Part of the Galaxy Resources Webinar Series (Video, Slides 1, Slides 2)

immuneML is a platform for the analysis of adaptive immune receptors through machine learning. (Video)

Part of the Galaxy Resources Webinar Series (Slides, Video)

...with a special focus on bulk and single-cell RNA-Seq data analysis...

a high level overview of the Galaxy Project - what it is, what it does and how to start using it. And the Elixir Galaxy and currently forming Galaxy Czech communities (Slides)

A community contribution day

Online course by ELIXIR Norway

Next generation sequencing for RNA-Seq and Epigenetics

Online course by ELIXIR Norway

Full. Part of Cycle "Bioinformatique par la pratique" 2021

Online course by ELIXIR Norway

Progress towards executing GPU applications in Galaxy (Video)

A community contribution day

Jupyter Notebooks and RStudio in combination with Galaxy workflows (Video, Slides)

Full. Part of Cycle "Bioinformatique par la pratique" 2021

Galaxy collections and advanced collections features (Register)

What's changed recently, and what's involved (Slides, Video)

From parameter sweeping to automatic reports (Slides, Video)

Part of Cycle "Bioinformatique par la pratique" 2021

Full. Part of Cycle "Bioinformatique par la pratique" 2021

Get a taste of all the GTN has to offer!

How to grow the Galaxy Developer community? Admin Training Update (Slides, Video)

The ins and outs of setting up your own production quality Galaxy server.

(Video)

A community contribution day

How are we doing after a month? (Video)

A community contribution day

Distributing Galaxy Guidance: Working Groups (Video)

Options for using Galaxy: everywhere and right now (Slides, Video)

Label-free Proteomics data analysis in Galaxy

A community contribution day

Galaxy Training Network (Video)

Tool testing and tool deployment discussion (Video)

A community contribution day

(Video)

Bridging the gap between climate scientists and non-climate specialists

Register by 16 June

We are happy to announce that the next edition of the GTN Smörgåsbord training event will take place on **May 22-26, 2023**! It will once again be **free, online, self-paced, and choose-your-own-adventure style**. It will feature all the content of previous editions, plus lots more!

Workshop 'BioImaging and the European Open Science Cloud' organised by Euro-BioImaging ERIC in collaboration with EOSC-Life