Workshop on Single-cell Data Analysis with Galaxy
In this workshop, scientists learn single-cell data analysis using Galaxy. There is no requirement of any programming skills.
Date
LocationUniversity of Freiburg, Germany
General information
- Date: October 09-13th, 2023
- Format: on-site
- Location: PC-Pool room 3, Werthmannstraße 4, 79104 Freiburg
- Time: 9am-5pm CEST
- Cost: Free
- Contact: Pavankumar Videm (videmp@informatik.uni-freiburg.de)
Pedagogical information
Target Audience: Scientists with no or little Galaxy experience who want to analyse single-cell sequencing data.
Learning Objectives:
- To get introduced to Galaxy as a data analysis platform and the GTN training material
- To learn how to use tools and databases in Galaxy
- Preprocessing, clustering, and downstream analysis of single-cell data
Training material: For the hands-on course, we will use the training material from the Galaxy Training Network.
Preliminary schedule
| Day | Start | End | Session |
|---|---|---|---|
| October 09th | 9:00am | 3pm | Welcome - Galaxy introduction (optional, if you know Galaxy usage) |
| October 10th | 9:00am | 5pm | Introduction to single-cell RNA-seq, single-cell matrix creation and preprocessing |
| October 11th | 9:00am | 5pm | Normalization, clustering, marker gene identification, cell type annotation |
| October 12th | 9:00am | 5pm | Trajectory inference |
| October 13th | 9:00am | 5pm | Single-cell ATAC-seq data analysis |