How to use Galaxy

How to cite Galaxy

Citing Galaxy

If you use Galaxy@Pasteur please cite doi:10.7490/f1000research.1114334.1

Cluster Load

test

For pasteur users:

  • Instructions on how to import big data here.
  • Galaxy Initiation slides are available here.
  • If you need a new tool or a new genome index for an existing tool (bwa, blast, star...), send an email to Pasteur_galaxy_support.

Warning! When xml are updated, workflows using them must be adapted.

News

Secure Your Tools with Galaxy's New Credentials System

Galaxy 25.1 introduces a powerful new credentials system that lets tools securely access external APIs and services with encrypted secret storage and a streamlined user experience.

Galaxy 2025 Year in Review

650K+ users, 186M+ jobs, ~15K commits across the ecosystem

Galaxy Newsletter December 2025

From celebrating 20 years of Galaxy to highlighting this year’s releases, training milestones, and research breakthroughs, this final newsletter of 2025 reflects on how far the community has come and looks ahead to what’s next.

The Galaxy 25.1 Release is Live!

Galaxy 25.1 brings a modern card-based history interface with advanced keyboard navigation, powerful Sample Sheets for complex workflow inputs, an enhanced Tool Discovery view with EDAM ontology integration, the new Galaxy Charts visualization framework featuring IGV.js genome browser, a dedicated Recent Exports & Downloads page, visual indicators for short-term storage expiration, secure tool credentials and authentication management, workflow editor search capabilities, a redesigned User Preferences interface, and much more!

Using Claude AI for Literature Searches

LLMs for literature search produce 'interesting' results: It is almost useful

Events

Mar 9 - Mar 13Workshop on high-throughput sequencing data analysis with Galaxy

This course introduces scientists to the data analysis platform Galaxy

May 4 - May 8European Geosciences Union (EGU) 2026

A Data Terra session to the European Geoscience Union