How to use Galaxy

How to cite Galaxy

Citing Galaxy

If you use Galaxy@Pasteur please cite doi:10.7490/f1000research.1114334.1

Cluster Load

test

For pasteur users:

  • Instructions on how to import big data here.
  • Galaxy Initiation slides are available here.
  • If you need a new tool or a new genome index for an existing tool (bwa, blast, star...), send an email to Pasteur_galaxy_support.

Warning! When xml are updated, workflows using them must be adapted.

News

Slow Storage on EU

Storage bottleneck on usegalaxy.eu results in slow queueing times

Work Package 5 of the EuroScienceGateway project

WP5 - use-cases from 3 early adopters to embrace Open Science best practices

Work Package 1 of the EuroScienceGateway project

WP1 is covering all aspects of project administration and project management

EuroScienceGateway - Kickoff meeting

The EuroScienceGateway project started officially with a 2 days kickoff meeting with all 17 partners

The start of the EuroScienceGateway - an EOSC project

EuroScienceGateway will deliver a robust, scalable, seamlessly integrated open infrastructure for data-driven research

Events

Oct 31 - Dec 19Analysis of biological data with Galaxy

Learn how to use Galaxy in YOUR research

Feb 6 - Feb 10Single-cell RNA-seq analysis using Galaxy

Participants will be guided through the droplet-based scRNA-seq analysis pipelines from raw reads to trajectories.

Apr 25 - Apr 26Galaxy Introduction for Life Scientists

This 1.5-day course will give a general introduction on the galaxy web-page structure, how to import data, run tools, share analyses and build workflows. Participants will run a whole NGS analysis using an RNA-seq dataset as an example.