How to use Galaxy

How to cite Galaxy

Citing Galaxy

If you use Galaxy@Pasteur please cite doi:10.7490/f1000research.1114334.1

Cluster Load

test

For pasteur users:

  • Instructions on how to import big data here.
  • Galaxy Initiation slides are available here.
  • If you need a new tool or a new genome index for an existing tool (bwa, blast, star...), send an email to Pasteur_galaxy_support.

Warning! When xml are updated, workflows using them must be adapted.

News

GPU-enabled JupyterLab enables interactive AI use-cases in Galaxy

Democratising GPU infrastructures by providing accelerated JuypterLab instances via Galaxy and combining them with HPC workflows

Simple and data privacy-aware publishing of genomic variance data from Galaxy to the Beacon project

Galaxy has gained a Beacon integration that enables users to publish genetic variance data conveniently via Beacon project

Accessibility in Galaxy 23.0 and beyond

Accessibility improvement Highlights for the upcoming 23.0 release, and a few words on accessibility in general

Building a distributed compute network across Europe

The Work Package 3 of the EuroScienceGateway project

The Climate community within the EuroScienceGateway project

Climate Community Strategy for Work Package 5

Events

Feb 2A practical workshop for (foodborne) pathogen detection from (direct Nanopore) sequencing data using Galaxy

The purpose of this workshop is to gain knowledge on detect (foodborne) pathogens from (direct Nanopore) sequencing data using Galaxy. The workshop will be on February 2nd 2023 as a 1-day hybrid (F2F at FHNW Muttenz, Switzerland and online), free and practical workshop.

Feb 6 - Feb 10Single-cell RNA-seq analysis using Galaxy

Participants will be guided through the droplet-based scRNA-seq analysis pipelines from raw reads to trajectories.

Feb 9Galaxy Community Call: 23.0 Release Testing Outcomes

A forum to share updates and discuss community-wide topics

Feb 9microGalaxy Community Call

microGalaxy is a communities of practice focusing on microbial analysis with Galaxy

Mar 2Galaxy Community Call

A forum to share updates and discuss community-wide topics