Galaxy Pasteur - Galaxy Community Hub

How to use Galaxy

Learn how to use Galaxy
History Introduction
- A detailed introduction to the Galaxy History
Galaxy UI
- A gentle introduction to the Galaxy User Interface
Scratchbook - Introduction
- An introduction on how to display multiple datasets and visualizations next to each other.
Pasteur Galaxy Initiation slides are available here.

How to cite Galaxy

Citing Galaxy

If you use Galaxy@Pasteur please cite doi:10.7490/f1000research.1114334.1

Cluster Load

For pasteur users:

Instructions on how to import big data here.
Galaxy Initiation slides are available here.
If you need a new tool or a new genome index for an existing tool (bwa, blast, star...), send an email to Pasteur_galaxy_support.

Warning! When xml are updated, workflows using them must be adapted.

News

Evaluation of the current usage and future needs of Galaxy for microbial data analysis - We Need Your Help!

The microGalaxy community of practice would like to learn more about use-cases where Galaxy was beneficial, and also the barriers that prevent researchers from using Galaxy. The aim is to collectively find solutions to improve user experience and reduce barriers. To this end, we are launching a survey to reach out to, and learn from, the microbial research community.

New Paper "Return of the Tbx5; lineage-tracing reveals ventricular cardiomyocyte-like precursors in the injured adult mammalian heart"

Siatra et al. have used the European Galaxy server to identify cell populations capable of cardiac regeneration that we will be able to trace and monitor

Effortlessly navigate your Galaxy history with enhanced search options

Data searchability in the Galaxy History panel has been taken to new levels with the advanced search options that allow users to not only find items with more ease, but also find relations within items in their history.

Enjoy a much faster user interface

Following up on our modernization efforts, we now introduce a single top-router written in Vue, which brings all our Vue components together in a seamless user experience, dramatically reducing the number of required page reloads when navigating the Galaxy user interface.

Galaxy Mentor Network: Reset

We launched the Galaxy Mentor Network one year ago with the idea to onboard new members in the community. Now, one year later, we realize that we failed. We still believe in the power that the Galaxy Mentor Network, and, in that spirit, we would like to relaunch the Galaxy Mentor Network with a new matching process.

Events

Apr 19 - Apr 20Imaging in Galaxy

Workshop 'BioImaging and the European Open Science Cloud' organised by Euro-BioImaging ERIC in collaboration with EOSC-Life

May 22 - May 26GTN Smörgåsbord 2023

We are happy to announce that the next edition of the GTN Smörgåsbord training event will take place on May 22-26, 2023! It will once again be free, online, self-paced, and choose-your-own-adventure style. It will feature all the content of previous editions, plus lots more!