How to use Galaxy

How to cite Galaxy

Citing Galaxy

If you use Galaxy@Pasteur please cite doi:10.7490/f1000research.1114334.1

Cluster Load


For pasteur users:

  • Instructions on how to import big data here.
  • Galaxy Initiation slides are available here.
  • If you need a new tool or a new genome index for an existing tool (bwa, blast, star...), send an email to Pasteur_galaxy_support.

Warning! When xml are updated, workflows using them must be adapted.


Shiny phyloseq interactive tool available on - practical outcome of the Bioconductor Hackathon

We are thrilled to announce, that thanks to the help of the Bioconductor community, we could deploy the Shiny phyloseq App as an interactive tool (IT) on

Galaxy in Research: Unlocking genetic secrets of Lake Baikal’s endemic sponges

Explore the depths of Lake Baikal and discover how cutting-edge genetic research in Galaxy is unraveling the complex relationships between its unique sponge species.

Enabling architectures that collect community-centric research software metadata

The ELIXIR Research Software Ecosystem (RSEc) and the Galaxy Codex make use of GitHub CI bots to collect research software metadata and provide a FAIR tool metadata repository for the global research community

Galaxy in Research: Molecular secrets of minnow adaptation to salinity stress

Discover how advanced transcriptomic analyses in Galaxy reveal the intricate molecular adaptations of minnows to freshwater salinization.


Jul 19Ask Us Anything about Galaxy live webinar

The European Galaxy Team offers a Q&A session for all users

Jul 22 - Jul 26Workshop on high-throughput sequencing data analysis with Galaxy

This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.

Aug 7Get Started with Galaxy

Join us for a hands-on virtual workshop designed to introduce you to essential bioinformatics skills using Galaxy—perfect for beginners and those looking to refresh their knowledge.

Sep 10 - Sep 13A practical introduction to bioinformatics and RNA-seq using Galaxy

Ready to explore the fascinating world of RNA-seq data analysis using Galaxy? Don't miss out on this incredible opportunity! Visit our event webpage now to discover the program details, meet the organising team, and submit your application.