Galaxy is an open-source platform for FAIR data analysis that enables users to:

  • use tools from various domains (that can be plugged into workflows) through its graphical web interface.
  • run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
  • manage data by sharing and publishing results, workflows, and visualizations.
  • ensure reproducibility by capturing the necessary information to repeat and understand data analyses.

The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.

The French Galaxy server

The French Galaxy server UseGalaxy.fr is maintained by IFB NNCR Cluster Task force. Please check our Terms of Use and data retention police before using the server. We offer thousands of tools, increased quota on temporary basis, and compute infrastructure for trainers through Training Infrastructure as a Service (TIaaS).

The following regional platforms, members of IFB, are involved in the maintenance and development of UseGalaxy.fr:

Contact

Ask for help, tools, or temporary increase of quota on our support forum

qsupport



Contact support

Training

If you are organising a training session, you can book computing resources using the TIaaS system

training

TIaaS request

GalaxyCat

Can't find a tool on usegalaxy.fr? Why not search on the IFB Galaxy Catalog ?

GalaxyCat



Browse GalaxyCat

Citation

Have you used the French Galaxy server for your data analysis?



citation

Cite the server

Team

The French Galaxy team is distributed across different cities in France.



team

Meet the team

Communities: domain-centric Galaxy subdomains

Workflow4Metabolomics

Data processing, analysis and annotation for the metabolomics community

Workflow4Metabolomics

Workflow4Metabolomics

ProteoRE

Functional analysis and exploration of proteomics and transcriptomics data in biomedical research

ProteORE


ProteoRE

Covid19

Variant analysis, consensus using communuty approuved workflows and datasets

Covid19


Covid19

Metabarcoding

With the following tools and pipelines : FROGS, Qiime, Mothur, Obitools, DADA2, PICRUSt

Metabarcoding


Metabarcoding

Met4J

Open-source Java library dedicated to the structural analysis of metabolic networks

met4j


Met4j

MNHN

Tools from the French Muséum National d'Histoire Naturelle

MNHN


MNHN

News

Inference using a publicly available pre-trained AI model (BioModels) in Galaxy

Use a Galaxy tool for making prediction on test data using publicly available pre-trained AI model (BioModels) served via a Docker container

New Paper "Transformer-based tool recommendation system in Galaxy"

[GTN news] Feedback: Easy slide recordings

[GTN news] GTN has left Twitter/X as of October

[GTN news] Update: Workflow List now searches WorkflowHub.eu, advanced query syntax

Events

Dec 11 - Dec 152nd BioHackathon Germany

The 2nd BioHackaton Germany will take palce in Bielefeld and has 11 exciting projects.

Mar 4 - Mar 8Workshop on High-Throughput Data Analysis with Galaxy

This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.

Jun 24 - Jun 292024 Galaxy Community Conference (GCC2024)

The annual gathering of the Galaxy Community with opportunities to hear latest developments, get training, and meet everyone involved.