Galaxy is an open-source platform for FAIR data analysis that enables users to:

  • use tools from various domains (that can be plugged into workflows) through its graphical web interface.
  • run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
  • manage data by sharing and publishing results, workflows, and visualizations.
  • ensure reproducibility by capturing the necessary information to repeat and understand data analyses.

The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.

The French Galaxy server

The French Galaxy server UseGalaxy.fr is maintained by IFB NNCR Cluster Task force. Please check our Terms of Use and data retention police before using the server. We offer thousands of tools, increased quota on temporary basis, and compute infrastructure for trainers through Training Infrastructure as a Service (TIaaS).

The following regional platforms, members of IFB, are involved in the maintenance and development of UseGalaxy.fr:

Contact

Ask for help, tools, or temporary increase of quota on our support forum

qsupport



Contact support

Training

If you are organising a training session, you can book computing resources using the TIaaS system

training

TIaaS request

GalaxyCat

Can't find a tool on usegalaxy.fr? Why not search on the IFB Galaxy Catalog ?

GalaxyCat



Browse GalaxyCat

Citation

Have you used the French Galaxy server for your data analysis?



citation

Cite the server

Team

The French Galaxy team is distributed across different cities in France.



team

Meet the team

Communities: domain-centric Galaxy subdomains

Workflow4Metabolomics

Data processing, analysis and annotation for the metabolomics community

Workflow4Metabolomics

Workflow4Metabolomics

ProteoRE

Functional analysis and exploration of proteomics and transcriptomics data in biomedical research

ProteORE


ProteoRE

Covid19

Variant analysis, consensus using communuty approuved workflows and datasets

Covid19


Covid19

Metabarcoding

With the following tools and pipelines : FROGS, Qiime, Mothur, Obitools, DADA2, PICRUSt

Metabarcoding


Metabarcoding

Met4J

Open-source Java library dedicated to the structural analysis of metabolic networks

met4j


Met4j

MNHN

Tools from the French Muséum National d'Histoire Naturelle

MNHN


MNHN

News

Shiny phyloseq interactive tool available on usegalaxy.eu - practical outcome of the Bioconductor Hackathon

We are thrilled to announce, that thanks to the help of the Bioconductor community, we could deploy the Shiny phyloseq App as an interactive tool (IT) on usegalaxy.eu

IRCCS AOUBO Hospital in Bologna leverages Galaxy Project for diagnosing rare diseases

The Galaxy Project has found its way into the practices of a leading medical institution in Bologna, Italy

Galaxy Newsletter: July 2024

Tune in for exciting updates from GCC2024, the latest Galaxy release, and more in this edition of the Galaxy Newsletter!

GCC2024 Meeting Report

Discover the highlights from GCC2024, where the Galaxy community gathered in Brno to share insights, innovations, and collaborations.

Galaxy in Research: Unlocking genetic secrets of Lake Baikal’s endemic sponges

Explore the depths of Lake Baikal and discover how cutting-edge genetic research in Galaxy is unraveling the complex relationships between its unique sponge species.

Events

Jul 22 - Jul 26Workshop on high-throughput sequencing data analysis with Galaxy

This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.

Aug 7Get Started with Galaxy

Join us for a hands-on virtual workshop designed to introduce you to essential bioinformatics skills using Galaxy—perfect for beginners and those looking to refresh their knowledge.

Sep 10 - Sep 13A practical introduction to bioinformatics and RNA-seq using Galaxy

Ready to explore the fascinating world of RNA-seq data analysis using Galaxy? Don't miss out on this incredible opportunity! Visit our event webpage now to discover the program details, meet the organising team, and submit your application.

Sep 19Small Scale Galaxy Admins Meeting

Oct 8 - Oct 10Gateways 2024

Help bridge the connection between science and gateways, such as Galaxy.