Galaxy is an open-source platform for FAIR data analysis that enables users to:

  • use tools from various domains (that can be plugged into workflows) through its graphical web interface.
  • run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
  • manage data by sharing and publishing results, workflows, and visualizations.
  • ensure reproducibility by capturing the necessary information to repeat and understand data analyses.

The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.

The French Galaxy server

The French Galaxy server UseGalaxy.fr is maintained by IFB NNCR Cluster Task force. Please check our Terms of Use and data retention policy before using the server. We offer thousands of tools, increased quota on temporary basis, and compute infrastructure for trainers through Training Infrastructure as a Service (TIaaS).

The following regional platforms, members of IFB, are involved in the maintenance and development of UseGalaxy.fr:

Contact

Ask for help, tools, or temporary increase of quota on our support forum

qsupport



Contact support

Training

If you are organising a training session, you can book computing resources using the TIaaS system

training

TIaaS request

GalaxyCat

Can't find a tool on usegalaxy.fr? Why not search on the IFB Galaxy Catalog ?

GalaxyCat



Browse GalaxyCat

Citation

Have you used the French Galaxy server for your data analysis?



citation

Cite the server

Team

The French Galaxy team is distributed across different cities in France.



team

Meet the team

Communities: domain-centric Galaxy subdomains

Microbiology

Whether you're working with microbiome samples or bacterial isolates, long or short reads, shotgun or 16S sequencing, genomics, transcriptomics, proteomics, metabolomics, or integrative multi-omics analysis—this is the place for you!

microGalaxy

Microbiology

Single-cell

Access Single Cell Omics analysis tutorials, tools, and workflows that let you analyse data without programming experience or private infrastructure.

Workflow4Metabolomics

Single-cell

Workflow4Metabolomics

Data processing, analysis and annotation for the metabolomics community

Workflow4Metabolomics

Workflow4Metabolomics

Covid19

Variant analysis, consensus using community approved workflows and datasets

Covid19


Covid19

Metabarcoding

With the following tools and pipelines: FROGS, QIIME, Mothur, Obitools, dada2, PICRUSt

Metabarcoding


Metabarcoding

Met4J

Open-source Java library dedicated to the structural analysis of metabolic networks

met4j


Met4j

MNHN

Tools from the French Muséum National d'Histoire Naturelle

MNHN


MNHN

News

RSpace is now integrated with Galaxy

Analyze data with Galaxy, keep it under control on RSpace

Unraveling the Mystery of GRB 221009A: Secondary Gamma Rays and Cosmic Magnetic Field

The possibility of multi-TeV secondary gamma rays from GRB221009A

New Galaxy Tool: Identify Label Issues in Machine Learning Datasets Using Cleanlab

Identify Label Issues in Machine Learning Datasets Using Cleanlab

RO-Crate specification 1.2 released

Specification for RO-Crate 1.2 released

Galaxy Workshop for Humanities and Social Sciences in Freiburg

Introducing Galaxy and Digital Humanities on site

Events

Jun 10 - Jun 16Mycobacterium tuberculosis complex NGS made easy

These series of webinars and tutorials aim at improving basic and applied knowledge associated with NGS technologies and their applications in the field of Tuberculosis.

Jun 19Small Scale Galaxy Admins Meeting

Jun 23 - Jun 26Galaxy and Bioconductor Community Conference

Get ready for the first-ever Galaxy and Bioconductor Community Conference (GBCC 2025)! Join us in New York for an unforgettable event packed with cutting-edge bioinformatics workshops, inspiring keynotes, and amazing networking opportunities.

Jun 30 - Jul 4From Data to Discovery: Metagenomics, RNA-Seq - NGS Bioinformatics with Galaxy

This course introduces scientists to the data analysis platform Galaxy

Jul 1Single-cell & sPatial Omics Community Meeting: 🖖🏾SPOC