Galaxy is an open-source platform for FAIR data analysis that enables users to:

  • use tools from various domains (that can be plugged into workflows) through its graphical web interface.
  • run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
  • manage data by sharing and publishing results, workflows, and visualizations.
  • ensure reproducibility by capturing the necessary information to repeat and understand data analyses.

The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.

The French Galaxy server

The French Galaxy server UseGalaxy.fr is maintained by IFB NNCR Cluster Task force. Please check our Terms of Use and data retention police before using the server. We offer thousands of tools, increased quota on temporary basis, and compute infrastructure for trainers through Training Infrastructure as a Service (TIaaS).

The following regional platforms, members of IFB, are involved in the maintenance and development of UseGalaxy.fr:

Contact

Ask for help, tools, or temporary increase of quota on our support forum

Training

If you are organising a training session, you can book computing resources using the TIaaS system

GalaxyCat

Can't find a tool on usegalaxy.fr? Why not search on the IFB Galaxy Catalog ?

Citation

Have you used the French Galaxy server for your data analysis?



Team

The French Galaxy team is distributed across different cities in France.



Communities: domain-centric Galaxy subdomains

Workflow4Metabolomics

Data processing, analysis and annotation for the metabolomics community

ProteoRE

Functional analysis and exploration of proteomics and transcriptomics data in biomedical research

Covid19

Variant analysis, consensus using communuty approuved workflows and datasets

Metabarcoding

With the following tools and pipelines : FROGS, Qiime, Mothur, Obitools, DADA2, PICRUSt

Met4J

Open-source Java library dedicated to the structural analysis of metabolic networks

MNHN

Tools from the French Muséum National d'Histoire Naturelle

News

Galaxy Newsletter: March 2024

Dive into the March 2024 Galaxy Newsletter!

Achievements during the 'Image Analysis in Galaxy' hackathon

Find out the new features that are now available for image analysts!

NCBI Foreign Contamination Screen Tool: Now Available in Galaxy!

We are thrilled to have partnered with NCBI to include their Foreign Contamination Screen tool in Galaxy!

CellProfiler now available in Galaxy as an interactive tool too

Use CellProfiler as if you were working in your local workstation

Events

Mar 18 - Mar 19de.NBI / RTG2355 Galaxy Training Course - RNAseq Analysis

Joint training event of de.NBI and RTG2355 about RNAseq Analysis

May 7 - May 11Biology of Genomes

The 2024 meeting will address DNA sequence variation and its role in molecular evolution, population genetics, complex diseases, comparative genomics, large-scale studies of gene and protein expression, and genomic approaches to ecological systems.

Jun 17 - Jun 21Workshop on high-throughput sequencing data analysis with Galaxy

This course introduces scientists to the data analysis platform Galaxy. The course is a beginner course; there is no requirement of any programming skills.

Jun 24 - Jun 292024 Galaxy Community Conference (GCC2024)

The annual gathering of the Galaxy Community with opportunities to hear latest developments, get training, and meet everyone involved.