Freiburg Galaxy News

news

This page contains announcements of interest to the Galaxy Community. These include items from the Galaxy Team or the Galaxy community and address anything that is of wide interest to the community.

Also see the Galactic Blog for more.

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To add a news item, create a new folder within the news folder with an index.md file. It's probably easiest to copy the format from one of the other existing news items as a template.

30 November 2022Slow Storage on EUStorage bottleneck on usegalaxy.eu results in slow queueing times
24 November 2022Work Package 1 of the EuroScienceGateway projectWP1 is covering all aspects of project administration and project management
24 November 2022Work Package 5 of the EuroScienceGateway projectWP5 - use-cases from 3 early adopters to embrace Open Science best practices
6 November 2022EuroScienceGateway - Kickoff meetingThe EuroScienceGateway project started officially with a 2 days kickoff meeting with all 17 partners
5 November 2022The start of the EuroScienceGateway - an EOSC projectEuroScienceGateway will deliver a robust, scalable, seamlessly integrated open infrastructure for data-driven research
4 November 2022Are you passionate about training in life sciences? The Freiburg Galaxy Team is looking for a team member who will develop, coordinate and implement training programs within international communities, especially via BioNT, a new multi-organization project funded by the European Commission, and via the Galaxy Training Network (GTN).
1 November 2022Impact on Galaxy of OpenSSL 3.0.x Vulnerabilities CVE-2022-3602 and CVE-2022-3786 ("Spooky SSL")Official severity downgraded to HIGH, exploitability and impact to Galaxy is very low
27 October 2022Galaxy Workshop at the Institute of PharmacologyLearn ChIP-seq and ATAC-seq with Galaxy
23 October 2022UseGalaxy.eu Tool Updates for 2022-10-23
19 October 2022Research Data Management in GalaxyHow Galaxy manages your (meta)data
17 October 2022Galaxy as a cross-EOSC platformNew scientific collaboration agreement between EOSC-Life and EOSC-Pillar
16 October 2022UseGalaxy.eu Tool Updates for 2022-10-16
14 October 2022Well-being and Mental Health GuidelinePublication of the Guideline
12 October 2022Outcomes of the European Galaxy DaysThe European Galaxy Community gathered in Freiburg to discuss recent and future Galaxy developments
9 October 2022UseGalaxy.eu Tool Updates for 2022-10-09
3 October 2022UseGalaxy.eu Tool Updates for 2022-10-03
2 October 2022UseGalaxy.eu Tool Updates for 2022-10-02
28 September 2022Introducing the Galaxy Global HubFind all your Galaxy info in one website
25 September 2022UseGalaxy.eu Tool Updates for 2022-09-25
18 September 2022UseGalaxy.eu Tool Updates for 2022-09-18On 2022-09-18, the tools on UseGalaxy.eu were updated by our automated tool update and installation process.
11 September 2022UseGalaxy.eu Tool Updates for 2022-09-11On 2022-09-11, the tools on UseGalaxy.eu were updated by our automated tool update and installation process.
4 September 2022UseGalaxy.eu Tool Updates for 2022-09-04On 2022-09-04, the tools on UseGalaxy.eu were updated by our automated tool update and installation process.
28 August 2022UseGalaxy.eu Tool Updates for 2022-08-28On 2022-08-28, the tools on UseGalaxy.eu were updated by our automated tool update and installation process.
21 August 2022UseGalaxy.eu Tool Updates for 2022-08-21On 2022-08-21, the tools on UseGalaxy.eu were updated by our automated tool update and installation process.
16 August 2022UseGalaxy.eu Tool Updates for 2022-08-16On 2022-08-16, the tools on UseGalaxy.eu were updated by our automated tool update and installation process.
15 August 2022UseGalaxy.eu Tool Updates for 2022-08-15On 2022-08-15, the tools on UseGalaxy.eu were updated by our automated tool update and installation process.
10 August 2022The European Galaxy Team is hiring!The Freiburg Galaxy Team is looking for a Systems Engineer/DevOps Engineer!
7 August 2022UseGalaxy.eu Tool Updates for 2022-08-07On 2022-08-07, the tools on UseGalaxy.eu were updated by our automated tool update and installation process.
5 August 2022OpenAPI support in Galaxy and Interactive API DocumentationSince Galaxy release 22.05 it's much easier to discover, explore, learn and experiment with the Galaxy Rest API.
31 July 2022UseGalaxy.eu Tool Updates for 2022-07-31On 2022-07-31, the tools on UseGalaxy.eu were updated by our automated tool update and installation process.
24 July 2022UseGalaxy.eu Tool Updates for 2022-07-24On 2022-07-24, the tools on UseGalaxy.eu were updated by our automated tool update and installation process.
19 July 2022UseGalaxy.eu Tool Updates for 2022-07-19On 2022-07-19, the tools on UseGalaxy.eu were updated by our automated tool update and installation process.
18 July 2022UseGalaxy.eu Tool Updates for 2022-07-18On 2022-07-18, the tools on UseGalaxy.eu were updated by our automated tool update and installation process.
10 July 2022UseGalaxy.eu Tool Updates for 2022-07-10On 2022-07-10, the tools on UseGalaxy.eu were updated by our automated tool update and installation process.
6 July 2022New Paper "Creating a good learning and sharing environment for bioinformatics"Tomas Klingström and J.I. Ohlsson have published a paper about the use of BioContainers, Galaxy, and the GTN for bioinformatics researchers.
3 July 2022UseGalaxy.eu Tool Updates for 2022-07-03On 2022-07-03, the tools on UseGalaxy.eu were updated by our automated tool update and installation process.
27 June 2022UseGalaxy.eu Tool Updates for 2022-06-27On 2022-06-27, the tools on UseGalaxy.eu were updated by our automated tool update and installation process.
27 June 2022GCC2022: Registration open for Webinar modeFor those that won't attend in person, the GCC Organizing Committee is happy to announce a virtual webinar-like option
23 June 2022Usegalaxy.eu has reached 50,000 registered usersBig thanks to everybody that has contributed to the success of UseGalaxy.eu and to each of the 50K users for using Galaxy! Next stop: 100K!
23 June 2022One aim of the BY-COVID project is to build a framework enabling data from newly emerging infectious disease threats to be made rapidly and widely accessible.
21 June 2022Galaxy taking part @ Elixir All Hands 2022During 6-9th of June, members of the European Galaxy team travelled to Amsterdam to join the ELIXIR All Hands meeting 2022 where we joined other colleagues from ELIXIR-DE.
19 June 2022UseGalaxy.eu Tool Updates for 2022-06-19On 2022-06-19, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #332
12 June 2022UseGalaxy.eu Tool Updates for 2022-06-12
7 June 2022Training Infrastructure Feedback from Stefanie Dukowic-SchulzeDr.
5 June 2022UseGalaxy.eu Tool Updates for 2022-06-05
29 May 2022UseGalaxy.eu Tool Updates for 2022-05-29On 2022-05-29, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #329
27 May 2022New Paper "Transcriptome profiling of cisplatin resistance in triple-negative breast cancer: New insight into the role of PI3k/Akt pathway"Amir Sabbaghian and colleagues have published a paper related to the resistance to cisplatin in the treatment of triple negative breast cancer.
23 May 2022UseGalaxy.eu Tool Updates for 2022-05-23
15 May 2022UseGalaxy.eu Tool Updates for 2022-05-15
8 May 2022UseGalaxy.eu Tool Updates for 2022-05-08
1 May 2022UseGalaxy.eu Tool Updates for 2022-05-01
28 April 2022Training Infrastructure Feedback from Hans-Rudolf Hotz and Lucille DelisleAfter 2 years running the SIB "Galaxy Introduction for Life Scientists" course only online, we were super happy to stand in front of a crowd and meet again the students in person.
24 April 2022UseGalaxy.eu Tool Updates for 2022-04-24On 2022-04-24, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #323
20 April 2022Towards a sustainable storage, enabling co-financing of public infrastructureResearch groups and networks can include their own storage into the European Galaxy server and decide about quota and data policies.
17 April 2022UseGalaxy.eu Tool Updates for 2022-04-17
12 April 2022It has been a long discussed feature within the GTN Tutorial Author Community: how can we provide trainees with choice in their tutorials, and how can we as trainers not duplicate large tutorials just to show a slightly different path at one point?.
11 April 2022Complete human genome T2T-CHM13v2.0 available in GalaxySomething that the scientific community has been eagerly awaiting: the first complete, gap-free sequence for all 24 human chromosomes (including Y)
10 April 2022UseGalaxy.eu Tool Updates for 2022-04-10
3 April 2022UseGalaxy.eu Tool Updates for 2022-04-03
28 March 2022UseGalaxy.eu Tool Updates for 2022-03-28
23 March 2022Enough talking - time to act!The next global climate strike will be on March 25!
20 March 2022UseGalaxy.eu Tool Updates for 2022-03-20
20 March 2022Genomic analysis on Galaxy using Azure CycleCloud
14 March 2022We are proud to announce that, as result of the collaboration with the Vertebrate Genomes Project (VGP), a new training describing the VGP assembly pipeline is now available in the Galaxy Training Network
14 March 2022UseGalaxy.eu Tool Updates for 2022-03-14
13 March 2022Announcing the Workflows Community Initiative (WCI)The Workflows Community Initiative has lunched the new website at workflows.community. The Freiburg Galaxy team is part of this Inititive to help improving computational workflows for everyone.
13 March 2022Announcing the Workflows Community Initiative (WCI)
7 March 2022New Paper "Gut microbiota drives age-related oxidative stress and mitochondrial damage in microglia via the metabolite N6-carboxymethyllysine"Our work led by Omar Mossad and Thomas Blank (Institute of Neuropathology, University of Freiburg) has been published last week in Nature Neuroscience
7 March 2022New Paper "Distal and proximal cis-regulatory elements sense X chromosome dosage and developmental state at the Xist locus"Congratulations Rutger Gjaltema and team for your latest findings about X chromosome regulations.
6 March 2022UseGalaxy.eu Tool Updates for 2022-03-06
5 March 2022New Paper "Impact of high platelet turnover on the platelet transcriptome: Results from platelet RNA-sequencing in patients with sepsis"Thomas Nührenberg and team published a new paper in PLOS ONE about the "Impact of high platelet turnover on the platelet transcriptome".
28 February 2022New Paper "Pluripotency factors determine gene expression repertoire at zygotic genome activation"
27 February 2022UseGalaxy.eu Tool Updates for 2022-02-27
25 February 2022Machine learning in GalaxyArtificial intelligence (machine learning and deep learning) algorithms are being increasingly applied in several fields of Bioinformatics such as drug-response and protein structure prediction, imputing missing data in single-cell gene expression, modelling evolution in biological sequences and many more.
25 February 2022New Paper "Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework"Matthias Fahrner from the University of Freiburg is defending his PhD today.
24 February 2022AlphaFold now available in GalaxyIt seems the whole world is talking about AlphaFold, the AI system that predicts a protein’s 3D structure from its amino acid sequence that achieves accuracy comparable with real-life experiments.
22 February 2022ELIXIR staff exchange between the German and Italian ELIXIR nodes
21 February 2022New Paper "The temperature-regulated DEAD-box RNA helicase CrhR interactome: autoregulation and photosynthesis-related transcripts"Thanks Anzhela Migur and team for sharing your recent work about the temperature-regulated DEAD-box RNA helicase CrhR interactome.
20 February 2022UseGalaxy.eu Tool Updates for 2022-02-20
15 February 2022Protein target prediction of a bioactive ligand with Align-it and ePharmaLibBioactive compounds often bind to several target proteins, thereby exhibiting polypharmacology.
14 February 2022UseGalaxy.eu Tool Updates for 2022-02-14
13 February 2022UseGalaxy.eu Tool Updates for 2022-02-13
6 February 2022UseGalaxy.eu Tool Updates for 2022-02-06
1 February 2022IT security management of the University of Freiburg certified by TÜV SÜDTÜV SÜD has awarded the University's data centre the international certification for information security management systems ISO/IEC 27001.
1 February 2022IT security management of the University of Freiburg certified by TÜV SÜD
29 January 2022UseGalaxy.eu Tool Updates for 2022-01-29
28 January 2022Further building on the work in the automatic Jupyter Notebook, we’ve now re-written the Jupyter export to be faster, and more importantly added support for R and RMarkdown!
23 January 2022UseGalaxy.eu Tool Updates for 2022-01-23
20 January 2022Usegalaxy.eu surpassed 40.000 registered usersWe are celebrating that usegalaxy.eu reached 40,000 registered users last November! Over the last year, the number of registered users has almost doubled, from 25,000 to more than 41,000 by January 2022.
16 January 2022New Pre-Print "Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function"Among the 30 non-synonymous nucleotide substitutions in the Omicron S-gene are 13 that have only rarely been seen in other SARS-CoV-2 sequences.
14 January 2022UseGalaxy.eu Tool Updates for 2022-01-14
17 December 2021UseGalaxy.eu Tool Updates for 2021-12-17
16 December 2021Usegalaxy.eu project infrastructure and CVE-2021-44228 vulnerabilityThe Freiburg galaxy team reviewed the Usegalaxy.eu software stack, looking for the presence of vulnerable versions of the Log4j library.
14 December 2021A second Smörgåsbord with even more Galaxy Training
14 December 2021
14 December 2021The Galaxy Training Network will now support annotating Funding Agencies on training materials.
8 December 2021Accessible and scalable detection and identification of foodborne pathogens, a project with Biolytix and funded by EOSC-LifeThanks to funding from EOSC-Life, the Freiburg Galaxy team will work in 2022 with Biolytix, a Swiss Small and Medium-sized Enterprise (SME) specialized in molecular biology and microbiological analyses, toward Accessible and scalable detection and identification of foodborne pathogens.
1 December 2021Find out how contributing simple markdown tutorials can result in fantastically FAIR training.
1 December 2021We have just finished a new collection of training material for genome assembly and annotation!
1 December 2021
29 November 2021Omicron and SARS-CoV-2 genome surveillanceA first view of the Omicron lineage’s mutational pattern derived transparently and fully reproducibly from raw sequencing reads
27 November 2021UseGalaxy.eu Tool Updates for 2021-11-27
25 November 2021An overview and statistics on the Galaxy Help ForumFrom the GHelp supporting group, we thank you for the trust you place in us every day.
25 November 2021
23 November 2021Videos from online training events are now easier to find.
23 November 2021
21 November 2021UseGalaxy.eu Tool Updates for 2021-11-21
17 November 20214th de.NBI Cloud User meetingThe 4th de.NBI Cloud User meeting took place from 12th to 24th of November 2021. Many researchers from different bioinformatics research areas gathered to learn more about cloud computing and the de.NBI Cloud.
15 November 2021Biohackathon Europe 2021Last week we had the BioHackathon Europe 2021 in Barcelona, as a hybrid event and with participants from all over the world.
13 November 2021UseGalaxy.eu Tool Updates for 2021-11-13
13 November 2021Training Infrastructure feedback: FORCeS eScience courseTools in Climate Science: Linking Observations with Modelling
10 November 2021Access data from the GTN in a more accessible, API based way.
6 November 2021UseGalaxy.eu Tool Updates for 2021-11-06
2 November 2021Galaxy Release 21.09Tool Panel Views, Collections, Reports, Remote Data, FastAPI, SQLAlchemy & much more!
30 October 2021UseGalaxy.eu Tool Updates for 2021-10-30
23 October 2021UseGalaxy.eu Tool Updates for 2021-10-23
18 October 2021Training Infrastructure Feedback from Dr. Theodora TsirkaWe have received feedback about TIaaS from Dr. Theodora Tsirka, during the Training School on Microbiome Sequencing and Data Analysis
16 October 2021UseGalaxy.eu Tool Updates for 2021-10-16
13 October 2021BY-COVID: A new EU project for pandemic preparednessA new €12 million Horizon Europe funded project which will tackle the data challenges that can hinder effective pandemic response.
12 October 2021UseGalaxy.eu Use Case: cellular specification, differentiation and morphogenesis of the mucociliary epitheliumSarah Bowden from the Innere Medizin IV (Nephrologie und Allgemeinmedizin) and ZBSA - Center for Biological Systems Analysis in Freiburg (Germany) has shared with us the main area of research of her project.
12 October 2021As part of our work under the Gallantries Grant we are establishing a new topic within the GTN specifically focused on Data Science skills.
11 October 2021UseGalaxy.eu Use Case: microRNAs in heart diseaseIleana Duran Fernandez from the School of Medicine of the Technical University of Munich works on heart disease.
8 October 2021A proteomics sample metadata representation for multiomics integration and big data analysisAn extension and implementation of the MAGE-TAB format for proteomics (MAGE-TAB-Proteomics).
6 October 2021New brochure from ELIXIR GermanyELIXIR Germany has published the handout "ELIXIR GERMANY - Shaping the Bioinformatics Infrastructure for Life Sciences in Europe".
5 October 2021UseGalaxy.eu FTP Server UpdateOn 2021-10-06, the FTP server accessible through the domain ftp.usegalaxy.eu will be upgraded with a new hardware and a new configuration.
2 October 2021UseGalaxy.eu Tool Updates for 2021-10-02
1 October 2021Teaching bioinformatics through blood, mucus and tearsWatch out for that My Little Pony baby stroller.
29 September 2021
26 September 2021UseGalaxy.eu Tool Updates for 2021-09-26
23 September 2021New Paper "Ready-to-use public infrastructure for global SARS-CoV-2 monitoring"
20 September 2021UseGalaxy.eu Tool Updates for 2021-09-20
17 September 2021Enough talking - time to act!
15 September 2021UseGalaxy.eu as a cross-disciplinary platform for European researchers
11 September 2021UseGalaxy.eu Tool Updates for 2021-09-11
10 September 2021Annual reports 2020: ELIXIR and IFBThe ELIXIR and IFB annual reports for 2020 are out, and they highlight Galaxy work throughout.
4 September 2021UseGalaxy.eu Tool Updates for 2021-09-04
3 September 2021UseGalaxy.eu Use Case: Marine turtle tumour disease
1 September 2021Win, Win, Win. When users support education programs to say thanks for free Galaxy resources
28 August 2021UseGalaxy.eu Tool Updates for 2021-08-28
27 August 2021UseGalaxy.eu Use Case: Antibody responses following vaccination
24 August 2021Training Infrastructure as a Service (TIaaS) is sponsored by EOSC-LifeAnyone providing training is eligible to request the use of this service.
24 August 2021Updates from the ELIXIR Galaxy CommunityAn updated ELIXIR Galaxy website includes our goals, with a special emphasis on interactions with the local, domain-specific and global communities; plus much more
21 August 2021UseGalaxy.eu Tool Updates for 2021-08-21
20 August 2021UseGalaxy.eu Use Case: Food safety research
14 August 2021UseGalaxy.eu Tool Updates for 2021-08-14
13 August 2021UseGalaxy.eu Use Case: Sex determination of fish species
7 August 2021UseGalaxy.eu Tool Updates for 2021-08-07
30 July 2021UseGalaxy.eu Use Case: Circadian research
28 July 2021
27 July 2021UseGalaxy.eu Tool Updates for 2021-07-27
27 July 2021
25 July 2021UseGalaxy.eu Tool Updates for 2021-07-25
23 July 2021UseGalaxy.eu Use Case: Heart research
21 July 2021Freiburg Galaxy Team at the Galaxy Community Conference 2021
17 July 2021UseGalaxy.eu Tool Updates for 2021-07-17
16 July 2021UseGalaxy.eu Use Case: Epigenomics and transcriptomics in cancer
13 July 2021Highlights from the Galaxy Community Conference 2021399 participants from 55 countries
10 July 2021UseGalaxy.eu Tool Updates for 2021-07-10
9 July 2021UseGalaxy.eu Use Case: Plant genomics
5 July 2021UseGalaxy.eu Use Case: colorectal cancer research
4 July 2021ownCloud and Nextcloud integration for your private data
3 July 2021UseGalaxy.eu Tool Updates for 2021-07-03
2 July 2021"Galaxy for microbiome via ASaiM story - From a local project to a global effort to support microbiome data analysis" - Talk at Holistic Bioinformatic Approaches used in Microbiome Research
2 July 2021UseGalaxy.eu Use Case: Genomics, evolution, and ecology of organohalide-respiring bacteria
1 July 2021Women in Data Science 2021 - Perspectives in Industry and Academia - Join Bayer AG and de.NBI / ELIXIR Germany event
30 June 2021
28 June 2021Open Life Science program & the Galaxy community: involvement in OLS-3 and invitation to apply to the next cohortOpen Life Science (OLS) is an online mentoring & training program
26 June 2021
26 June 2021UseGalaxy.eu Tool Updates for 2021-06-26
25 June 2021
25 June 2021UseGalaxy.eu Use Case: Genetics research on dairy cattle
21 June 2021UseGalaxy.eu Tool Updates for 2021-06-21
19 June 2021UseGalaxy.eu Tool Updates for 2021-06-19
18 June 2021UseGalaxy.eu Use Case: Zika virus effects on brain and brain tumours
12 June 2021UseGalaxy.eu Tool Updates for 2021-06-12
11 June 2021
10 June 2021Training Infrastructure Feedback from Abdus Salam
9 June 2021A Galaxy of tools at your fingertips inside of Broad Institutes Terra
7 June 2021New Paper "Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine"The Galaxy-ML platform provides all the tools necessary to define a learner, train it, evaluate it, and visualize its performance.
5 June 2021UseGalaxy.eu Tool Updates for 2021-06-05
4 June 2021
1 June 2021
29 May 2021UseGalaxy.eu Tool Updates for 2021-05-29
29 May 2021New Paper "Tryptophan metabolism drives dynamic immunosuppressive myeloid states in IDH-mutant gliomas"
28 May 2021Webinars: Galaxy Resources for ...Watch them now.
25 May 2021New Paper "Robust and efficient single-cell Hi-C clustering with approximate k-nearest neighbor graphs"
25 May 2021
25 May 2021
20 May 2021The first Spanish tutorial is live! Galaxy has always had google-translated tutorials, but we are now embarking on a project to assess the learning experience with human-translated, vs google-translated, bioinformatics tutorials.
20 May 2021
19 May 2021UseGalaxy.eu Apollo Update
14 May 2021Two New Teaching Papers using GalaxyTwo hand-in-hand teaching papers have been published this week using Galaxy as a teaching platform.
13 May 2021UseGalaxy.eu Tool Updates for 2021-05-13
13 May 2021New Paper "Novel insights into the electrophysiology of murine cardiac macrophages: relevance of voltage-gated potassium channels"
11 May 2021COVID updates: B.1.617.2 detected in COG-UK data from the beginning of AprilWe checked the COG-UK data to see if we’d find representative samples of B.1.617.2 (one of the Indian lineages, and a Variant of Concern).
11 May 2021UseGalaxy.eu Tool Updates for 2021-05-11
4 May 2021GCC2021 Abstract and Fellowship Submission, and Early Registration Deadlines ExtendedTalks & Fellowships due 17 May; Poster/Demos due 14 June
4 May 2021May 2021 Galactic NewsGCC2021 and James Taylor Video Deadlines Extended, plus a whole lot more.
30 April 2021Outcomes of the workshop 'SARS-CoV-2 Data Analysis and Monitoring with Galaxy'Building capacity, both in the analysis and data management sides of SARS-CoV-2
30 April 2021Plant Transcriptomics Workshop: A SummaryNew platform, new learners, new paradigms.
29 April 2021Monitoring of raw open data for SARS-CoV-2 genome surveillanceUseGalaxy.eu is now automatically collecting, and analyzing raw sequencing data published by the COVID-19 Genomics UK Consortium (COG-UK).
26 April 2021UseGalaxy.eu Tool Updates for 2021-04-26
25 April 202130,000 users
19 April 2021The Galaxy community involved in several ELIXIR Implementation Studies
17 April 2021UseGalaxy.eu Tool Updates for 2021-04-17
15 April 2021
14 April 2021GCC2021 Registration is OpenPlease join us at Galaxy's annual community gathering
14 April 2021GCC2021 Conference FellowshipsApply by May 17
14 April 2021GCC2021 Abstract Submission are OpenAbstracts are due May 17
14 April 2021UseGalaxy.eu Tool Updates for 2021-04-14
12 April 2021April 2021 Galactic NewsGCC2021 Abstracts and Registration are open, plus lots more.
10 April 2021UseGalaxy.eu Tool Updates for 2021-04-10
8 April 2021Updates from the Single-Cell Community in Freiburg
3 April 2021UseGalaxy.eu Tool Updates for 2021-04-03
3 April 2021Training Infrastructure Feedback from Simon Gladman
29 March 2021New Paper "The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies"
29 March 2021New Paper "CryptoGenotyper: A new bioinformatics tool for rapid Cryptosporidium identification"
28 March 2021Training Infrastructure Feedback from Dr. Fotis Psomopoulos
27 March 2021UseGalaxy.eu Tool Updates for 2021-03-27
25 March 2021How to import a workflow from the Workflow Hub and run it on remote COVID-19 data
25 March 2021Training Infrastructure Feedback from Dr. Ricardo Gonzalo Sanz
25 March 2021Galaxy-ELIXIR webinars series: Advanced Features
22 March 2021Training Infrastructure Feedback from Martin Čech
20 March 2021UseGalaxy.eu Tool Updates for 2021-03-20
19 March 2021Training Infrastructure Feedback from Dr. Tuan Leng Tay
19 March 2021
17 March 2021March 2021 Galactic NewsNew Featured and Community News sections; new events, releases, training, and lots of videos
16 March 20212021 Google Summer of CodeGalaxy is participating
16 March 2021UseGalaxy.eu Tool Updates for 2021-03-16
16 March 2021
16 March 2021
13 March 2021RADseq data analysis (on mobile phone while baby is sleeping)(on mobile phone while baby is sleeping)
10 March 2021Successful use cases from EOSC-Life using GalaxyThe first round of EOSC-Life demonstrators has driven eight successful use cases, three of them using Galaxy.
9 March 2021The European HealthyCloud consortium kick-off is today!
7 March 2021New Paper "ChiRA: an integrated framework for chimeric read analysis from RNA-RNA interactome and RNA structurome data"
6 March 2021European Galaxy Server part of CatRIS
28 February 2021New introductory video to the Galaxy Training Network
27 February 2021UseGalaxy.eu Tool Updates for 2021-02-27
25 February 2021Galaxy-ELIXIR webinar series: Open Data Infrastructures to tackle COVID-19 pandemic
22 February 2021Training Infrastructure Feedback from Mali Salmon-Divon
20 February 2021UseGalaxy.eu Tool Updates for 2021-02-20
20 February 2021Login via ELIXIR-AAI, Google, LinkedIn, or your ORCID iD
18 February 2021New Paper "Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities"
18 February 2021Meet & Join the Galaxy Community
17 February 2021Chceme od tebe slyšet!
15 February 2021Using secure BioContainers to run Galaxy tools
14 February 2021Massive open online education party: GTN SmörgåsbordStarting Monday the 15th of February, the Galaxy Training Network (GTN) is running a global Galaxy online course
13 February 2021UseGalaxy.eu Tool Updates for 2021-02-13
8 February 2021February 2021 Galactic NewsEvents, platform news, blog posts, videos, pubs, jobs and releases
8 February 2021
6 February 2021Galaxy Metabolomics Mini-Symposium reportnext meetings are planned for March 11, May 6 and at the Galaxy Community Conference in July.
6 February 2021UseGalaxy.eu Tool Updates for 2021-02-06
5 February 2021New hardware: More RAM
5 February 2021The European Galaxy server listed as an official resource on the COVID-19 Data Portal
4 February 20212021 Galaxy Community Conference will be virtual, global, and affordableAnd globally accessible
4 February 2021
1 February 2021Three articles related to COVID-19 research using Galaxy in the de.NBI brochureJust part of how de.NBI is supporting COVID-19 research
30 January 2021UseGalaxy.eu Tool Updates for 2021-01-30
30 January 2021ISMB 2020 conference videos available on YouTube
30 January 2021New and updated CNV and Variant Calling toolson UseGalaxy.eu and in the Toolshed
28 January 2021Training Infrastructure Feedback from Lachlan Gray
26 January 2021UseGalaxy.eu Tool Updates for 2021-01-26
22 January 2021Variant Analysis of SARS-CoV-2 Sequencing Data (Jan 2021 update)January 2021 update
18 January 2021Nora, the new visualisation in GalaxyA new framework for medical imaging research
18 January 2021Major update to SearchGUI and PeptideShaker
15 January 2021New Galaxy Community Organization: Working Groups
12 January 2021Nominate a training for the 2021 Galaxy Community Conference (GCC2021)
11 January 2021New Paper "Tool recommender system in Galaxy using deep learning"by Anup Kumar, Helena Rasche, Björn Grüning, Rolf Backofen in GigaScience
7 January 2021January 2021 Galactic NewsEvents, platform news, blog posts, videos, pubs, jobs and releases
4 January 2021GTN Plant-related trainings
2 January 2021UseGalaxy.eu Tool Updates for 2021-01-02
31 December 2020The European Galaxy Server in 2020What a shitty year! But it’s over and we hope you and your family are safe and healthy.
28 December 2020European Galaxy Flavours
26 December 2020UseGalaxy.eu Tool Updates for 2020-12-26
24 December 2020UseGalaxy.eu Tool Updates for 2020-12-24
22 December 2020Open Life Science program & the Galaxy community: involvement in OLS-2 and invitation to apply to the next cohort involvement in OLS-2 and invitation to apply to the next cohort
16 December 2020New Paper "Galaxy CLIP-Explorer: a web server for CLIP-Seq data analysis"
15 December 2020New Paper "Proximity to injury, but neither number of nuclei nor ploidy define pathological adaptation and plasticity in cardiomyocytes"
8 December 2020December 2020 Galactic NewsAnd what a month it is
8 December 2020Training Infrastructure Feedback on the ELIXIR Belgium workshop “DDA and DIA proteomic analysis in Galaxy”
3 December 2020UseGalaxy.eu update to 20.09
28 November 2020UseGalaxy.eu Tool Updates for 2020-11-28
27 November 2020Training Infrastructure Feedback from Ambre Jousselin
27 November 2020
24 November 2020Activity report of the last 5 years of the Freiburg Galaxy TeamCrucial infrastructure serving more than 22,000 researchers
23 November 2020Images stored in local OMERO instances are now available from GalaxyAn important step towards the accessibility of bioimage data
22 November 2020New Paper "Decitabine induces gene derepression on monosomic chromosomes: in vitro and in vivo effects in adverse-risk cytogenetics AML"
21 November 2020UseGalaxy.eu Tool Updates for 2020-11-21
21 November 2020New Paper "Diabetes changes gene expression but not DNA methylation in cardiac cells"
20 November 2020Simplified submission of SARS-CoV-2 data to open databases
19 November 2020Open Source Software Strategy approved by the European Commission
18 November 2020The NFDI-DataPLANT consortium has already kick-off!
17 November 2020New hardware: More storage and GPUsde.NBI-Cloud has extended the support to the European Galaxy Server
16 November 2020Biohackathon Europe 2020The Galaxy community has participated in several projects
14 November 2020UseGalaxy.eu Tool Updates for 2020-11-14
7 November 2020UseGalaxy.eu Tool Updates for 2020-11-07
3 November 2020November 2020 Galactic NewsJXTX Foundation, Events, Platforms, Jobs, Pubs, ...
31 October 2020UseGalaxy.eu Tool Updates for 2020-10-31
29 October 2020The first Paper Cuts Community Fest was a success!So we will do this again in November!
24 October 2020UseGalaxy.eu Tool Updates for 2020-10-24
23 October 2020New Paper "NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy"New paper in GigaScience
23 October 2020New Paper "A single-cell RNA-sequencing training and analysis suite using the Galaxy framework"
22 October 2020The EOSC-Life newsletter is out!Galaxy training, CellProfiler, and more
22 October 2020More than 8000 packages/containers in Bioconda/BioContainers from more than 1000 contributorsfrom 1000+ contributors
21 October 202020,000 users
17 October 2020UseGalaxy.eu Tool Updates for 2020-10-17
14 October 2020Training Infrastructure Feedback from Leighton PritchardAddressing challenges the global coronavirus pandemic
10 October 2020UseGalaxy.eu Tool Updates for 2020-10-10
8 October 2020The Community Against COVID-19
7 October 2020October 2020 Galactic NewsEvents & JTech, platforms, blog posts, tutorials, pubs, releases, ...
3 October 2020UseGalaxy.eu Tool Updates for 2020-10-03
26 September 2020UseGalaxy.eu Tool Updates for 2020-09-26
23 September 2020EOSC-Life Open CallsTwo funding opportunities are now open in EOSC-Life.
15 September 2020Remote training using GalaxyLessons learned from our ELIXIR Galaxy Machine Learning Workshop
12 September 2020UseGalaxy.eu Tool Updates for 2020-09-12
11 September 2020Enough talking - time to act!
10 September 2020The ELIXIR tools platform for COVID-19 research at the ECCB2020
8 September 2020EOSC-Life has awarded two training projects to the European Galaxy teamFrom 1st EOSC-Life Training Open Call
7 September 2020Freiburg Galaxy team is participating to the 2nd cohort of the Open Life Science program
6 September 2020Galaxy Europe Branding Material
5 September 2020UseGalaxy.eu Tool Updates for 2020-09-05
2 September 2020New Paper "No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics"
1 September 2020September 2020 Galactic NewsBCC2020 & GCC2021, events, platforms, blog posts, tutorials, pubs, releases, obs ...
1 September 2020New Paper "pyGenomeTracks: reproducible plots for multivariate genomic data sets"
31 August 2020New Paper "Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera"
30 August 2020New Paper "An epigenetic map of malaria parasite development from host to vector"
29 August 2020UseGalaxy.eu Tool Updates for 2020-08-29
22 August 2020Galaxy will join the NFDI-DataPLANT consortium in October 2020UseGalaxy.eu and DataPLANT consortium to record and deliver large data volumes for modern crop research
22 August 2020UseGalaxy.eu Tool Updates for 2020-08-22
22 August 20203 steps to get your tool into Galaxy - A real-world exampleA real-world example
15 August 2020UseGalaxy.eu Tool Updates for 2020-08-15
8 August 2020UseGalaxy.eu Tool Updates for 2020-08-08
1 August 2020UseGalaxy.eu Tool Updates for 2020-08-01
30 July 2020Galaxy Africa Community Update
29 July 2020UseGalaxy.eu update to 20.05
27 July 2020Climate Science at BCC2020July has been a very busy month for Galaxy Climate
25 July 2020Training Infrastructure Feedback from Rodrigo Ortega Polo
25 July 2020UseGalaxy.eu Tool Updates for 2020-07-25
23 July 2020Computational chemistry at BCC2020
22 July 2020UseGalaxy.eu Tool Updates for 2020-07-22
19 July 2020The landscape of SARS-CoV-2 RNA modificationsStudying the RNA modifications of SARS-CoV-2 to improve understanding of SARS viruses
18 July 2020UseGalaxy.eu Tool Updates for 2020-07-18
13 July 2020UseGalaxy.eu Tool Updates for 2020-07-13
3 July 2020Processing of Single Cell RNA-Seq Data with Galaxy
3 July 2020Intuitive, reproducible high-throughput molecular dynamics in Galaxy: a tutorial
1 July 2020July 2020 Galactic NewsBCC2020, SRA, Events, Platforms, Training, Jobs, ...
1 July 2020CellProfiler now available in Galaxy
20 June 2020UseGalaxy.eu Tool Updates for 2020-06-20
16 June 2020UseGalaxy.eu Tool Updates for 2020-06-16
13 June 2020UseGalaxy.eu Tool Updates for 2020-06-13
11 June 2020June 2020 Galactic NewsJames Taylor Foundation, BCC2020, Galaxy+SRA, Events, Platforms, ...
8 June 2020Training Infrastructure Feedback from Marcel Schulz
6 June 2020UseGalaxy.eu Tool Updates for 2020-06-06
3 June 2020The ChemicalToolbox: reproducible, user-friendly cheminformatics analysis on the Galaxy platformcheminformatics.usegalaxy.eu
30 May 2020UseGalaxy.eu Tool Updates for 2020-05-30
24 May 2020UseGalaxy.eu Tool Updates for 2020-05-24
15 May 2020UseGalaxy.eu Tool Updates for 2020-05-15
4 May 2020May 2020 Galactic NewsJames Taylor, BCC2020, COVID-19 Response, and more
2 May 2020UseGalaxy.eu Tool Updates for 2020-05-02
25 April 2020UseGalaxy.eu Tool Updates for 2020-04-25
23 April 2020Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and explorationa visualization plug-in that extends Galaxy-P’s advantages into the visualization of large, complex datasets
18 April 2020UseGalaxy.eu Tool Updates for 2020-04-18
14 April 2020Integrative meta-omics analysisMetagenomics, Metatranscriptomics, Metaproteomics
11 April 2020UseGalaxy.eu Tool Updates for 2020-04-11
4 April 2020UseGalaxy.eu Tool Updates for 2020-04-04
3 April 2020James Taylor1979 - 2020
2 April 2020Workshop on Workflow Management Systems
28 March 2020UseGalaxy.eu Tool Updates for 2020-03-28
24 March 2020ChiRA tool suite - an integrated framework for Chimeric Read Analysis from RNA-RNA interactome dataan integrated framework for Chimeric Read Analysis from RNA-RNA interactome data
24 March 2020
21 March 2020UseGalaxy.eu Tool Updates for 2020-03-21
19 March 2020WirVsVirus HackathonMarch 20-22
14 March 2020UseGalaxy.eu Tool Updates for 2020-03-14
11 March 2020Virtual screening against SARS-CoV-2 main proteaseworkflows for identifying potential ligands by virtual screening
10 March 2020UseGalaxy.eu Tool Updates for 2020-03-10
9 March 2020Storage issues and potential data loss
7 March 2020UseGalaxy.eu Tool Updates for 2020-03-07
6 March 2020de.NBI Training Infrastructure Feedback from Helena Rascheand was wildly successful
29 February 2020UseGalaxy.eu Tool Updates for 2020-02-29
28 February 2020
27 February 2020TIaaS Calendar and Stats siteTraining Infrastructure as a Service
26 February 2020
25 February 2020
21 February 2020UseGalaxy.eu Tool Updates for 2020-02-21
19 February 2020
17 February 2020UseGalaxy.eu Tool Updates for 2020-02-17
12 February 202012,000 users - 6,900,000 jobs - 13,300,000 datasets
11 February 2020Towards a European network of Galaxy resources
11 February 2020New Paper "Gene expression in immortalized versus primary isolated cardiac endothelial cells"
10 February 2020Training Infrastructure Feedback from Beata Scholtz
8 February 2020CORBEL staff visit program: Integration IDR - Galaxy
8 February 2020UseGalaxy.eu Tool Updates for 2020-02-08
7 February 2020Galaxy provides support as an NFDI
6 February 2020Accessible and reproducible mass spectrometry imaging data analysis in Galaxy
1 February 2020UseGalaxy.eu Tool Updates for 2020-02-01
30 January 2020ELIXIR tools platform meeting and Container SIS meeting in Paris
25 January 2020UseGalaxy.eu Tool Updates for 2020-01-25
22 January 2020Outreach - Invited Talk for Introducing Galaxy to Uniklinik Freiburg
20 January 2020Training Infrastructure Feedback from Denny Popp
18 January 2020UseGalaxy.eu Tool Updates for 2020-01-18
16 January 2020Human multi-omics data from UK Personal Genome Project accessible through UseGalaxy.eu
11 January 2020UseGalaxy.eu Tool Updates for 2020-01-11
8 January 2020Galaxy Training SurveyWe need your input on preparing and giving Galaxy Trainings
8 January 2020January 2020 Galactic NewsEvents, Pubs, Blogs, Platforms, Tutorials, Doc, and Happy New Year too
8 January 2020New Paper "Survey of metaproteomics software tools for functional microbiome analysis"
7 January 2020Massively Multiplayer Online Science in Galaxy to help Ecologists - A Citizen Science Project
5 January 2020118 new plant reference genomes and transcriptomes added to Galaxy Europe!
5 January 2020Laborjournal article about Galaxy
4 January 2020UseGalaxy.eu Tool Updates for 2020-01-04
28 December 2019UseGalaxy.eu Tool Updates for 2019-12-28
21 December 2019UseGalaxy.eu Tool Updates for 2019-12-21
14 December 2019UseGalaxy.eu Tool Updates for 2019-12-14
10 December 2019Training Infrastructure Feedback from the Gallantries Project
9 December 2019December 2019 Galactic NewsEvents, Pubs, Blogs, Platforms, Tutorials, Doc, Jobs, Releases, and Platypi too.
7 December 2019UseGalaxy.eu Tool Updates for 2019-12-07
3 December 2019Training Infrastructure Feedback from Ambre Jousselin
2 December 201910,000 users, 6,370,000 jobs and 11,900,000 datasetsA big thank you to all our users and people that have contributed to this project!
1 December 2019Training Infrastructure Feedback from Giovanni Widmer
30 November 2019UseGalaxy.eu Tool Updates for 2019-11-30
30 November 2019GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clustering
30 November 2019The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR
23 November 2019Enough talking - time to act!
22 November 2019UseGalaxy.eu Tool Updates for 2019-11-23
20 November 2019gProfiler is published and running on usegalaxy.euA toolset for functional enrichment analysis and conversions of gene lists.
15 November 2019UseGalaxy.eu Tool Updates for 2019-11-15
12 November 2019November 2019 Galactic NewsEvents! Pubs! Platforms! Jobs! Releases!
11 November 2019SINA available in Galaxy - Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
10 November 2019UseGalaxy.eu Tool Updates for 2019-11-10
8 November 2019UseGalaxy – a bioinformatic shopping mall from Sivakumar Prakash
7 November 2019RNA-Seq Training feedback from Simon Moxon
2 November 2019Training update from Tomas KlingströmAgricultural Sciences collaboration between Swedish University of Agricultural sciences researchers and the Agricultural Research Council in South Africa
23 October 2019Use the power of pandas / numpy to transform tabular datasets in a myriad of ways with our new Table Compute toolDrop or duplicate given rows or columns from a tabular dataset, filter rows or columns on their properties, replace or transform table elements, ...
19 October 2019UseGalaxy.eu Tool Updates for 2019-10-19
18 October 2019Parent instance error
17 October 2019UseGalaxy.eu Tool Updates for 2019-10-17
15 October 2019Training Infrastructure Feedback from Charles Girardot
12 October 2019UseGalaxy.eu Tool Updates for 2019-10-12
5 October 2019UseGalaxy.eu Tool Updates for 2019-10-05
2 October 2019October 2019 Galactic NewsEvents! Pubs! Platforms! Jobs! Doc! Tutorials! And some other news too.
2 October 2019UseGalaxy.eu Upgrading to 19.09
30 September 2019Another successful Galaxy high-throughput data analysis workshop in Freiburg
29 September 2019UseGalaxy.eu Tool Updates for 2019-09-29
21 September 2019UseGalaxy.eu Tool Updates for 2019-09-21
19 September 2019We are striking!
17 September 20198,000 users, 6,000,000 jobs and 11,000,000 datasets
16 September 2019Scientists must act on our own warnings to humanity
15 September 2019The European Galaxy server is part of the EOSC marketplace
14 September 2019UseGalaxy.eu Tool Updates for 2019-09-14
7 September 2019UseGalaxy.eu Tool Updates for 2019-09-07
6 September 2019First ATACseq training material!
31 August 2019UseGalaxy.eu Tool Updates for 2019-08-31
30 August 2019September 2019 Galactic NewsEvents! Pubs! Platforms! Jobs! Doc! Tutorials! Releases! And some other news too.
28 August 2019TIaaS Queue Status Update
24 August 2019UseGalaxy.eu Tool Updates for 2019-08-24
20 August 2019PathwayMatcher published and running on usegalaxy.eu
18 August 2019UseGalaxy.eu Tool Updates for 2019-08-18
17 August 2019Slamdunk - SLAMseq analysis for nucleotide-conversion sequencing datasetsSLAMseq analysis for nucleotide-conversion sequencing datasets
10 August 2019UseGalaxy.eu Tool Updates for 2019-08-10
6 August 2019Galaxy Community Conference - a brief summary!A brief summary
5 August 2019The Galaxy Genome Annotation Project - Scaling Genome Annotation for the MassesScaling Genome Annotation for the Masses
3 August 2019UseGalaxy.eu Tool Updates for 2019-08-03
2 August 2019MaxQuant goes Galaxy
1 August 2019August 2019 Galactic NewsGCC2019 is done; BCC2020 is coming
27 July 2019UseGalaxy.eu Tool Updates for 2019-07-27
22 July 2019The European Galaxy Team with talks at ISMB/ECCB
20 July 20197,000 users and 10,000,000 datasets
19 July 2019UseGalaxy.eu Tool Updates for 2019-07-19
13 July 2019UseGalaxy.eu Tool Updates for 2019-07-13
6 July 2019UseGalaxy.eu Tool Updates for 2019-07-06
30 June 2019GCC2019 will be livestreamed
28 June 2019July 2019 Galactic NewsGCC2019 is here! (And other new stuff too)
27 June 2019Tool Recommendation: What do I do next?usegalaxy.eu has implemented tool recommendation, finally answering the question "what to do next."
27 June 2019UseGalaxy.eu Tool Updates for 2019-06-27
21 June 2019UseGalaxy.eu Tool Updates for 2019-06-21usegalaxy.eu is getting ready for GCC 2019
17 June 2019TIaaS Queue Statususing UseGalaxy.eu’s Training infrastructure as a Service (TIaaS).
15 June 2019UseGalaxy.eu Tool Updates for 2019-06-15
13 June 2019Native support for Elixir-AAI in Galaxy v.19.05the European Galaxy Server hosted by Elixir Germany is now ready to accept logins from users using their Elixir AAI identity for authentication..
10 June 2019Training Infrastructure Feedback from Nevena Veljkovic
8 June 2019UseGalaxy.eu Tool Updates for 2019-06-08
6 June 2019UseGalaxy.eu update to 19.05
6 June 2019UseGalaxy.eu Tool Updates for 2019-06-06
3 June 2019June 2019 Galactic NewsGCC2019 registration / Poster/Demo abstracts / sponsors, GTN CoFest, Platforms, Pubs, Jobs, Blog!, Training, Tools, Releases and more!
24 May 2019Queue changes during GCC
20 May 2019Another successful Galaxy workshop in Melbourne
10 May 2019New Paper "The RNA workbench 2.0: next generation RNA data analysis"
10 May 2019Galaxy Workshop registration open!
6 May 2019May 2019 Galactic NewsGCC2019 registration / Poster/Demo abstracts / sponsors, GTN CoFest, Platforms, Pubs, Jobs, Blog!, Training, Tools, Releases and more!
26 April 2019A successful tool and training workshop for the ELIXIR Galaxy Community at Roscoff
24 April 2019GCC registration is open and abstracts can be submitted until Friday
23 April 2019UseGalaxy.eu Tool Updates for 2019-04-23
23 April 2019Visit from Macromolecular Crystallography Group (Diamond Synchrotron)
14 April 2019FASTQC jobs and very long reads
6 April 2019UseGalaxy.eu Tool Updates for 2019-04-06
4 April 2019
3 April 2019April 2019 Galactic NewsGCC2019 registration and abstract submission, Platforms, Pubs, Jobs, Blog!, Training, Tools, Releases and more!
3 April 2019We passed the 5,000,000th job and 5,000 users!
24 March 2019Convert mass spectrometry data file formats with msconvert
20 March 2019New Paper "Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315"
19 March 2019UseGalaxy.eu update to 19.01
18 March 2019UseGalaxy.eu Downtime on 18th March
15 March 2019New Paper "Biomolecular Reaction and Interaction Dynamics Global Environment (BRIDGE)
14 March 2019New Paper "The Chimera and the Cyborg"
4 March 2019March 2019 Galactic NewsGalaxyAdmins, GCC2019 Childcare sponsors, Platforms, Pubs, Jobs, Blog!, Training, Tools, Releases and more!
4 March 2019A(nother) successful Galaxy HTS data analysis workshop in Freiburg
21 February 2019Empowering the annotation and discovery of structured RNAs with scalable and accessible integrative clustering
15 February 2019We are now part of the BioDATEN project!
11 February 2019New Paper "Impact of angiogenic activation and inhibition on miRNA profiles of human retinal endothelial cells"
11 February 2019New Paper "Pou5f3, SoxB1, and Nanog remodel chromatin on High Nucleosome Affinity Regions at Zygotic Genome Activation"
9 February 2019Tool Quest: Do you know the answer?
27 January 2019
26 January 2019
25 January 2019The GOEnrichment tool and tutorial are now available on Galaxy, by Daniel Sobral
25 January 2019Galaxy enhances Introduction to Genomics as part of Master program in Belgrade, by Nevena Veljkovic
19 January 2019A successful Galaxy RNA-seq workshop in Belgrade
18 January 2019Queue cleared
11 January 2019Another European CVMFS mirror is online
10 January 2019The European Galaxy Team has open positions!
10 January 2019Galaxy HTS Workshop 25.2.-1.3.2019 - fully booked
8 January 2019New hardware: 8 x 1 TB memory nodes
31 December 2018New tutorial: Visualization of RNA-Seq results with Volcano Plot
25 December 2018Gajan Kristnaskon kaj bonan novjaron!
19 December 2018Automatic resubmission of failed Galaxy jobs
11 December 2018UseGalaxy.eu update to 18.09
1 December 2018Nominate a training for the 2019 Galaxy Community Conference (GCC2019)
30 November 2018
26 November 2018European Galaxy Days
23 November 2018ELIXIR Biohackathon in Paris
21 November 2018Automatic workflow testing
7 November 2018Upcoming Server Migration
5 November 2018New Paper "Uncontrolled Diabetes Mellitus Has No Major Influence on the Platelet Transcriptome"
31 October 2018Training Infrastructure Feedback from Maria Doyle
30 October 2018New Article 'Selbst ist der Forscher: Big-Data-Analysen leicht gemacht'
17 October 2018Heinz tools for network analysis over transcriptomics datasets
10 October 2018HiC Workshop for INDEPTH in Lucerne
10 October 2018New Article 'Datenanalyse mit dem Galaxy Server'
10 October 2018New Paper "Endothelial cell mineralocorticoid receptors oppose VEGF-induced gene expression and angiogenesis"
8 October 2018Initial release of 'gxadmin' tool
5 October 2018Successful Galaxy Proteomics workshop in Prague
26 September 2018Cloud Migration Postmortem
25 September 2018Galaxy and ... Bioconda, CLIP Explorer and RNA workbench @ GCB 2018
24 September 2018A successful Galaxy HTS data analysis workshop
21 September 2018UseGalaxy.eu Downtime
1 September 2018Galaxy on de.NBI cloud now with more power
25 July 2018Freiburg Galaxy Team has an open position!
18 July 2018GCCBOSC
12 July 2018Temporarily Held Workflow Invocations
4 July 2018Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization
4 July 2018Bioconda: sustainable and comprehensive software distribution for the life sciences
3 July 2018Tool Usage Graphs
3 July 2018New Paper "The Transcription Factor ETV1 Induces Atrial Remodeling and Arrhythmia."
18 June 2018Database outage affecting UseGalaxy.eu
6 June 2018Data Carpentry workshop and CarpentryCon
5 June 2018Workshop for Galaxy training material and skills improvement
4 June 2018Temporary Quota Issue
30 May 2018New Paper "Nanopolish tools for signal-level analysis of Oxford Nanopore sequencing data is now available in Galaxy"
28 May 2018New Paper "The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
25 May 2018UseGalaxy.eu update to 18.05 and GDPR
7 May 2018In memory of Christophe Caron
26 April 2018DNS outage affecting UseGalaxy.eu
24 April 2018Fileserver Outage affecting Jobs
23 April 2018New Galaxy Team member!
18 April 2018Galaxy Workshop registration open!
11 April 2018Galaxy Africa
16 March 2018Galaxy User Conference: second and last day
15 March 2018Galaxy User Conference: a successful first day
15 March 2018Freiburg Galaxy becomes useGalaxy.eu
14 March 2018ELIXIR Galaxy community kick-off meeting
9 March 2018Propagating hashtags in a Galaxy history
8 March 2018Map and identify phenotypic mutations in model organism genomes
6 March 2018New paper "Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization"
3 March 2018deepTools3 is now available!
13 February 2018ELIXIR Galaxy kick-off meeting 14.03.2018 in Freiburg
13 February 2018Program for the Galaxy User Conference
11 February 2018Genome Annotation Reloaded
1 February 2018New Paper "Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework"
30 January 2018New Paper "Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo"
30 January 2018We are now part of COST (CA16212)!
26 January 2018Next Galaxy Workshop on HTS data analysis in September 2018
18 January 2018Freiburg Galaxy Team has open positions!
18 January 2018Galaxy Workshop - Registration is closed!
17 January 2018ASaiM - an environment to analyze intestinal microbiota data
16 January 2018New Paper "High-resolution TADs reveal DNA sequences underlying genome organization in flies"
13 January 2018New Paper "Combinatorial omics analysis reveals perturbed lysosomal homeostasis in collagen VII-deficient keratinocytes"
12 January 2018ELIXIR Galxy Admin workshop in Oslo.
30 December 2017HiCExplorer - a suite of tools for reproducible Hi-C data analysis, quality control and visualization
30 December 2017GraphClust - Scalable clustering and annotation of structured and functional RNAs in an accessible and interactive fashion
11 December 2017Post Mortem: 2h Tool Execution Outage
10 December 2017Bioinformatic training with the B3Africa project
30 November 2017Our paper about the Galaxy Training material and community as a preprint on bioRXiv
28 November 2017New Paper "Sex differences in peripheral not central immune responses to paininducing injury"
22 November 2017DNA methylation signatures follow preformed chromatin compartments in cardiac myocytes
21 November 2017Post Mortem: Upload and various tool failures
17 November 2017Registration open for Galaxy HTS data analysis workshop 26.02.-02.03.2018
15 November 2017Successful Server Hardware Improvements
8 November 201790+ tools updated
8 November 2017Galaxy 17.09 released!
7 November 2017Workshop on Provisioning of Virtual Research Environments and Data Management
4 November 2017Minimap2 mapper for noisy long read sequences (e.g. Nanopore, PacBio)
2 November 2017First imaging mass spectrometry added
25 October 2017Latest version of MultiQC
24 October 2017Talk @ 5th early-stage researchers Next-Generation Sequencing Symposium
23 October 2017Galaxy Training infrastructure @ de.NBI Symposium
21 October 2017Our paper about BioConda on bioRxiv
19 October 2017Helping at the Software Carpentry workshop @ EMBL Heidelberg and Talk @ de.NBIer
17 October 2017MetaboFlow meeting (training and hackathon)
11 October 2017Our paper "Practical computational reproducibility in the life sciences" on bioRXiv
10 October 2017BioContainer Hackathon
29 September 2017deNBI Summer School - Computational genomics and RNA biology
29 September 2017VGCN: Rolling Replacement of Cloud Compute Resources
28 September 2017FIXED: upload jobs not scheduled
26 September 2017New Paper "Mitochondrial mutations in human cancer: Curation of translation"
22 September 2017End of our 5-day HTS Galaxy workshop in Freiburg, Germany
20 September 20173 Galaxy related posters @ GCB 2017
14 September 2017We passed the 2.000.000th job!
31 August 2017Search and get data from ENA with ENASearch
31 August 2017Fixed: Galaxy Metadata Issue
2 August 2017STAR: Ultrafast alignment of RNA-seq data
23 July 2017Talks, poster and training @ ISMB and BOSC
2 July 2017W4M: Workflow4Metabolomics 3.0
30 June 2017Galaxy Community Conference (GCC)