Cistrome Analysis Pipeline
ChIP-chip/seq and gene expression data
This is a Domain specific server.
- The Cistrome Analysis Pipeline has the standard Galaxy tools, plus 29 additional ChIP-chip and ChIP-seq specific tools, including preliminary peak calling and correlation analyses, downstream genome feature association, gene expression analyses, and motif discovery.
- Requires login, anyone can create a login.
- Cistrome: an integrative platform for transcriptional regulation studies. Liu T, Ortiz JA, Taing L, Meyer CA, Lee B, Zhang Y, Shin HG, Wong SS, Ma J, Lei Y, Pape UJ, Poidinger M, Chen Y, Yeung K, Brown M, Turpaz Y, Liu XS. Genome Biol 2011; 12(8):R83
- Cistrome tagged publications in Galaxy Publication library.