Analysis of Functions Expressed by Microbiomes

Online Workshop
15-24 November 2021

Microbiome experts and instructors from Galaxy community will teach online courses on microbiome analysis via interactive resources.

Agenda

All times are India Standard Time.

Date Time Program Platform
Nov 15 8:30-8:40 AM Welcome by Dr. Manoj Kumar (CSIR-IMTech, Chandigarh) MS Teams
8:40-8:50 AM Inauguration by Dr. Sanjeev Khosla (Director CSIR-IMTech, Chandigarh) MS Teams
8:50-9:00 AM Introduction to the online workshop - Dr. Pratik Jagtap (University of Minnesota, MN) MS Teams
9:05-10:00 AM Inaugural Lecture by Dr. Robert Hettich (Oak Ridge National Laboratory, Oak Ridge, TN) on introduction to microbiome research MS Teams
10:05-11:00 AM Introduction to Galaxy Video Tutorials - Dave Clements (Galaxy Project, Johns Hopkins University) and Pratik Jagtap (Galaxy-P Team, University of Minnesota, MN) Shared with Registered Users
11:15 AM-3:00 PM Attendees work on assignments based on the Galaxy video tutorials GTN Slack Channel
3:30-4:30 PM Applications within Galaxy - Dr. Anshu Bhardwaj (CSIR-IMTech, Chandigarh) MS Teams
5:30-6:30 PM Ice-Breaker Session (Interaction amongst attendees) Shared with Registered Users
6:30-7:30 PM Hands-on session to answer questions - Subina Mehta (Galaxy-P Team, University of Minnesota, MN) and Saskia Hiltemann (Erasmus University Medical Center, Hague) Shared with Registered Users
Nov 16 8:15-9:00 AM Microbiome/Galaxy Kahoot! Shared with Registered Users
9:05-10:00 AM Metagenomics Lecture by Dr. Yogesh Shouche (National Centre for Cell Science, Pune) MS Teams
10:05-11:00 AM Introduction to the Metagenomics video tutorials. Drs. Gareth Price and Igor Makunin (QCIF Facility for Advanced Bioinformatics, St. Lucia, Australia) Shared with Registered Users
11:15 AM-3:00 PM Attendees work on assignments based on the metagenomics video tutorials GTN Slack Channel
4:30-5:30 PM Talk on viral metagenomics by Dr. Manoj Kumar (CSIR-IMTech, Chandigarh) MS Teams
6:30-7:30 PM Hands-on session to answer metagenomics questions - Berenice Batut (University of Freiburg, Freiburg) and Saskia Hiltemann (Erasmus University Medical Center, Hague) Shared with Registered Users
Nov 17 8:15-9:00 AM Metagenomics Kahoot! Shared with Registered Users
9:05-10:00 AM Recorded Lecture by Dr. Berenice Batut (University of Freiburg, Freiburg) MS Teams
10:05-11:00 AM Introduction to the Metatranscriptomics video tutorials - Subina Mehta and Pratik Jagtap (Galaxy-P Team, University of Minnesota, MN) Shared with Registered Users
11:15 AM-3:00 PM Attendees work assignments based on the metatranscriptomics video tutorials GTN Slack Channel
6:30-7:30 PM Hands-on session to answer metatranscriptomics questions - Subina Mehta (Galaxy-P Team, University of Minnesota, MN) and Saskia Hiltemann (Erasmus University Medical Center, Hague) Shared with Registered Users
Nov 18 8:15-9:00 AM Metatranscriptomics Kahoot! Shared with Registered Users
9:05-10:00 AM Talk on ocean metaproteomics by Dr. Brook Nunn (University of Washington, Seattle, WA) MS Teams
10:05-11:00 AM Introduction to the Metaproteomics video tutorials - Pratik Jagtap and Subina Mehta (Galaxy-P Team, University of Minnesota, MN) Shared with Registered Users
11:15 AM-3:00 PM Attendees work on the assignments based on metaproteomics video tutorials GTN Slack Channel
5:30-6:30 PM Lecture on meta-omics analysis - Dr. Paul Wilmes (University of Luxembourg, Luxembourg) MS Teams
6:30-7:30 PM Hands-on session to answer metaproteomics questions - Subina Mehta and Pratik Jagtap (Galaxy-P Team, University of Minnesota, MN) Shared with Registered Users
Nov 19 9:15-9:45 AM Metaproteomics Kahoot! Shared with Registered Users
10:05-10:30 AM Introduction to presentation formats for attendees - Drs. Timothy Griffin and Pratik Jagtap (Galaxy-P Team, University of Minnesota, MN) Shared with Registered Users
Nov 22 8:30-11:00 AM Talks by participants. MS Teams
Nov 23 8:30-11:00 AM Talks by participants. MS Teams
Nov 24 9:05-10:00 AM Concluding Talk by Dr. Sharmila Mande (Distinguished Chief Scientist, TCS Research, Tata Consultancy Services Ltd.) MS Teams
10:05-11:00 AM Results, conclusion and feedback form. MS Teams

Analysis of Functions Expressed by Microbiomes Workshop Flyer

Applications

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Apply by October 17.

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