← Back to Home

Analysis of Functions Expressed by Microbiomes

Online Workshop
15-24 November 2021

Microbiome experts and instructors from Galaxy community will teach online courses on microbiome analysis via interactive resources.

Agenda

All times are India Standard Time.

Date Time Program
Nov 15 8:30-8:40 AM Inauguration by Dr. Sanjeev Khosla (Director CSIR-IMTech, Chandigarh)
8:30-8:40 AM Introduction to the online workshop - Drs. Pratik Jagtap (University of Minnesota, MN) and Manoj Kumar, (CSIR-IMTech, Chandigarh)
8:45-9:00 AM Inauguration by Dr. Sanjeev Khosla (Director CSIR-IMTech, Chandigarh)
9:05-10:00 AM Inaugural Lecture by Dr. Robert Hettich (Oak Ridge National Laboratory, Oak Ridge, TN) on introduction to microbiome research
10:05-11:00 AM Introduction to Galaxy Video Tutorials - Dave Clements (Galaxy Project, Johns Hopkins University) and Pratik Jagtap (Galaxy-P Team, University of Minnesota, MN)
11:15 AM-3:00 PM Attendees work on assignments based on the Galaxy video tutorials
3:30-4:30 PM Applications within Galaxy - Dr. Anshu Bhardwaj (CSIR-IMTech, Chandigarh)
5:30-6:30 PM Ice-Breaker Session (Interaction amongst attendees)
6:30-7:30 PM Hands-on session to answer questions - Subina Mehta (Galaxy-P Team, University of Minnesota, MN) and Saskia Hiltemann (Erasmus University Medical Center, Hague)
Nov 16 8:30-9:00 AM Microbiome/Galaxy Kahoot!
9:05-10:00 AM Metagenomics Lecture by Dr. Yogesh Shouche (National Centre for Cell Science, Pune)
10:05-11:00 AM Introduction to the Metagenomics video tutorials. Drs. Gareth Price and Igor Makunin (QCIF Facility for Advanced Bioinformatics, St. Lucia, Australia)
11:15 AM-3:00 PM Attendees work on assignments based on the metagenomics video tutorials
3:30-4:00 PM Vendor Talk
4:30-5:30 PM Talk on viral metagenomics by Dr. Manoj Kumar (CSIR-IMTech, Chandigarh)
6:30-7:30 PM Hands-on session to answer metagenomics questions - Berenice Batut (University of Freiburg, Freiburg) and Saskia Hiltemann (Erasmus University Medical Center, Hague)
Nov 17 8:30-9:00 AM Metagenomics Kahoot!
9:05-10:00 AM Recorded Lecture by Dr. Berenice Batut (University of Freiburg, Freiburg)
10:05-11:00 AM Introduction to the Metatranscriptomics video tutorials - Subina Mehta and Pratik Jagtap (Galaxy-P Team, University of Minnesota, MN)
11:15 AM-3:00 PM Attendees work assignments based on the metatranscriptomics video tutorials
6:30-7:30 PM Hands-on session to answer metatranscriptomics questions - Subina Mehta (Galaxy-P Team, University of Minnesota, MN) and Saskia Hiltemann (Erasmus University Medical Center, Hague)
Nov 18 8:30-9:00 AM Metatranscriptomics Kahoot!
9:05-10:00 AM Talk on ocean metaproteomics by Dr. Brook Nunn (University of Washington, Seattle, WA)
10:05-11:00 AM Introduction to the Metaproteomics video tutorials - Pratik Jagtap and Subina Mehta (Galaxy-P Team, University of Minnesota, MN)
11:15 AM-3:00 PM Attendees work on the assignments based on metaproteomics video tutorials
5:30-6:30 PM Lecture on meta-omics analysis - Dr. Paul Wilmes (University of Luxembourg, Luxembourg)
6:30-7:30 PM Hands-on session to answer metaproteomics questions - Subina Mehta and Pratik Jagtap (Galaxy-P Team, University of Minnesota, MN)
Nov 19 8:30-9:00 AM Metaproteomics Kahoot!
10:05-10:30 AM Introduction to presentation formats for attendees - Drs. Timothy Griffin and Pratik Jagtap (Galaxy-P Team, University of Minnesota, MN)
Nov 22 8:30-11:00 AM Talks by participants.
Nov 23 8:30-11:00 AM Talks by participants.
Nov 24 9:05-10:00 AM Concluding Talk by Dr. Sharmila Mande (Distinguished Chief Scientist, TCS Research, Tata Consultancy Services Ltd.)
10:05-11:00 AM Results, conclusion and feedback form.

Analysis of Functions Expressed by Microbiomes Workshop Flyer

Applications

We are now accepting applications for this workshop.

Apply by October 17.

Workshop Flyer

Please share this workshop with your colleagues and post the event flyer in your departments.