Welcome! GCC2021 training week has ended, but you can still work through the materials on your own!

Welcome everybody, and thank you for joining the GCC training week!

Everything you need for this course can be found on this webpage. More information including links to all training materials can be found by clicking on each session. Please adhere to our Code of Conduct, and have fun!


Introduction

Start here. This will cover all the logistics and practical information for this training week.

Lecture

Video Length: 15m
Subtitles By: Saskia Hiltemann, Helena Rasche
Description: Start here; we will go over all the important things to know to get the most out of this workshop
Training Material: Slides

Speaker

hexylena
Helena Rasche
shiltemann
Saskia Hiltemann

Supporting Materials

GTN logo

Tutorial

Video Length: 9m
Subtitles By: Helena Rasche
Description:
Training Material:

Speaker

hexylena
Helena Rasche

Supporting Materials

  • Slack channel: #general - Have question about the training? Did you run into a problem? Just wanna chat? Ask an Instructor on Slack!
  • Finished the session? - Let us know that you've finished it, and what you thought of it! On Slack: (Channel: #general ). Thanks!
  • Enjoyed it? - Like the video on YouTube, Tweet (hashtag #usegalaxy), and follow the GTN on Twitter! @gxytraining
GTN logo

Certificates of attendance can be requested after the training week.


Requirements
  1. Have a registration for the GCC2021 Training Week
  2. Keep all your Galaxy histories
    • We will ask you to provide links to the histories for all sessions you followed
    • If a tutorial does not create a Galaxy history (e.g. developer training), keep any other outputs you may create during the training session
  3. Answer the dailiy icebreakers question on Slack every day
  4. Be active on Slack!
    • Join the Slack channels for every training session you follow this week (links under "supporting materials" at the bottom of each session)
    • Let us know when you are starting with a session in the session's dedicated Slack channel
    • Talk about the session! Get stuck? Have a question about the science? want to discuss anything? do it in Slack!
    • Whenever you finish a session, let us know on Slack that you have completed the tutorial, and let us know what you thought of it!

NOTE: You can follow as few or as many training sessions as you want, we will give you a personalized certificate listing all the sessions you attended.

Icon of a Certificate
Request now!

Please fill in this this Certificate Request Form

Deadline: no later than July 11, 2021.

Note: only fill in this form when you have completed all the training session you want to.

Tutorial

Video Length: 5m
Subtitles By: Saskia Hiltemann
Description: This short video gives an overview of the worldwide Galaxy community, and different ways you can get involved! Video created by Beatriz Serrano-Solano.
Training Material: GalaxyProject Home, Galaxy servers, Galaxy Training Network, Support, Galaxy Publications, Galaxy Communities, Events, Mailing Lists, Galaxy Working Groups, GitHub, Gitter Chat, GTN Gitter, PaperCuts, GTN CoFest, Twitter, Twitter

Speaker

galaxycommunity
The Global GTN Community

Supporting Materials

GTN logo

Webinar Series: Galaxy Resources For..

Each of the 4 webinars in this series that ran earlier this year highlights avaialble Galaxy resources for a different audience. These videos are a nice way to get an overview of what Galaxy has to offer for different types of users.


..Researchers

Video Length: 1h10m
Subtitles By: We apologize for lack of captions on this video. If you are reliant on captions, please check back here soon.
Description: Wondering how to get started, or how to do a particular type of analysis, or how to scale to thousands of datasets? This webinar will highlight how to find the resources and help you need for each of these questions and more.
Training Material: Galaxy Webinar Page

Speaker



..Educators and Trainers

Video Length: 1h10m
Subtitles By: Saskia Hiltemann
Description: Galaxy is an exceptional resource for teaching bioinformatics and other data sciences. The Galaxy Platform itself makes sophisticated analysis tools and workflows accessible to learners without requiring them to become system administrators or learn command line interfaces. Galaxy is a graphical user interface that only requires a browser, and allows students and teachers to focus on concepts, rather than compute infrastructure.
Training Material: Galaxy Webinar Page


..Tool Developers

Video Length:
Subtitles By: We apologize for lack of captions on this video. If you are reliant on captions, please check back here soon.
Description: Galaxy is an excellent platform for increasing the visibility and use of computational tools in any domain that Galaxy has been applied to. If you develop computational analysis or visualization tools then this webinar will demonstrate how porting your tools to Galaxy can significantly increase their visibility and adoption.
Training Material: Galaxy Webinar Page

Speaker

blankenberg
Daniel Blankenberg
abretaud
Anthony Bretaudeau
petrnovak
Petr Novák


..Administrators & Infrastructure Providers

Video Length:
Subtitles By: We apologize for lack of captions on this video. If you are reliant on captions, please check back here soon.
Description: Galaxy can empower your community to create and run their own sophisticated and repeatable data analyses and visualizations, without requiring them to learn command line interfaces or Linux systems administration. If you are interested in helping your researchers help themselves with their data analyses, then this webinar is for you. We will cover resources available in the Galaxy ecosystem to help those who setup and maintain production Galaxy servers.
Training Material: Galaxy Webinar Page

Supporting Materials

GTN logo

Introduction to Galaxy

Start here if you are new to Galaxy. These videos will introduce you to the Galaxy platform, and walk you through your first analyses

Demo

Video Length: 10m
Subtitles By: Anton Nekrutenko
Description: This video will introduce the Galaxy data analysis platform, and give a short demo on how to use it.
Training Material: Slides

Speaker

nekrut
Anton Nekrutenko

Supporting Materials

GTN logo

Hands-on Tutorial

Video Length: 1h15m
Subtitles By: Anne Fouilloux
Description: This video tutorial will provide a non-genomics based first look at the Galaxy platform, how to use it, and discusses how you can get support for your data analysis.
Training Material: Tutorial

Speaker

annefou
Anne Fouilloux

Supported Servers

Supporting Materials

GTN logo

Day 1

At the beginning of each day, say hi in Slack and let us know are getting started by answering the following icebreaker questions!

Icebreaker pictogram
Monday Icebreaker Question


Let us know where you are from, and one fun fact about yourself!

Post your answers in #general on Slack!



And of course please feel free to respond to anybody here, this channel is for socializing and getting to know each other :)

Note: Please do this every day if you would like to receive a certificate of attendance

Tutorial



Tutorial

Video Length: 61m
Subtitles By: Martin Čech
Description:
Training Material: Slides, Tutorial


Slides

Video Length: 5m
Subtitles By: Martin Čech
Description:
Training Material: Slides, Tutorial

Speaker

ic4f
Sergey Golitsynskiy

Supporting Materials

  • Slides: Ansible
  • Tutorial: Ansible
  • Slack channel: #01-ansible - Have question about the training? Did you run into a problem? Just wanna chat? Ask an Instructor on Slack!
  • Finished the session? - Let us know that you've finished it, and what you thought of it! On Slack: (Channel: #01-ansible ). Thanks!
  • Enjoyed it? - Like the video on YouTube, Tweet (hashtag #usegalaxy), and follow the GTN on Twitter! @gxytraining
GTN logo

Tutorial



Week Overview

Video Length: 4m
Subtitles By: Saskia Hiltemann
Description:
Training Material: Week Overview Slides, Tutorial (All Parts), Database Slides, systemd Slides, Moving Towards Production Slides

Speaker

hexylena
Helena Rasche


Tutorial

Video Length: 2h47m
Subtitles By: Nate Coraor, Helena Rasche
Description:
Training Material: Week Overview Slides, Tutorial (All Parts), Database Slides, systemd Slides, Moving Towards Production Slides

Speaker

Supporting Materials

GTN logo

Day 2

At the beginning of each day, say hi in Slack and let us know are getting started by answering the following icebreaker questions!

Icebreaker pictogram
Tuesday Icebreaker Question


What is the coolest, most mind blowing fact (nature/people/animal etc.) you know?

Post your answers in #general on Slack!



And of course please feel free to respond to anybody here, this channel is for socializing and getting to know each other :)

Note: Please do this every day if you would like to receive a certificate of attendance

Tutorial

Video Length: 43m
Subtitles By: Cristóbal Gallardo, Simon Gladman
Description:
Training Material: Tutorial

Speaker

Supporting Materials

GTN logo

Tutorial



Slides

Video Length: 17m
Subtitles By: Catherine Bromhead
Description:
Training Material: Slides, Tutorial

Speaker

cat-bro
Catherine Bromhead


Tutorial

Video Length: 27m
Subtitles By: Catherine Bromhead
Description:
Training Material: Slides, Tutorial

Speaker

cat-bro
Catherine Bromhead

Supporting Materials

GTN logo

Tutorial

Video Length: 4m
Subtitles By: The Global GTN Community
Description:
Training Material: Slides

Speaker

awspolly
These slides are narrated by AWS Polly.

Supporting Materials

  • Slides: Users, Groups, and Quotas
  • Slack channel: #general - Have question about the training? Did you run into a problem? Just wanna chat? Ask an Instructor on Slack!
  • Finished the session? - Let us know that you've finished it, and what you thought of it! On Slack: (Channel: #general ). Thanks!
  • Enjoyed it? - Like the video on YouTube, Tweet (hashtag #usegalaxy), and follow the GTN on Twitter! @gxytraining
GTN logo

Tutorial



CVMFS Slides

Video Length: 3m
Subtitles By: The Global GTN Community
Description:
Training Material: Slides, Tutorial

Speaker

awspolly
These slides are narrated by AWS Polly.


CVMFS Tutorial

Video Length: 23m
Subtitles By: Simon Gladman
Description:
Training Material: Slides, Tutorial

Speaker

Supporting Materials

GTN logo

Tutorial

Video Length: 22m
Subtitles By: Helena Rasche, Saskia Hiltemann
Description:
Training Material: Tutorial

Speaker

shiltemann
Saskia Hiltemann

Supporting Materials

GTN logo

Day 3

At the beginning of each day, say hi in Slack and let us know are getting started by answering the following icebreaker questions!

Icebreaker pictogram
Wednesday Icebreaker Question


What is your favorite dish (food or drink)? Bonus points for recipes!

Post your answers in #general on Slack!



And of course please feel free to respond to anybody here, this channel is for socializing and getting to know each other :)

Note: Please do this every day if you would like to receive a certificate of attendance

Tutorial

Video Length: 31m
Subtitles By: Catherine Bromhead, Saskia Hiltemann
Description:
Training Material: Slides, Tutorial

Speaker

hexylena
Helena Rasche

Supporting Materials

GTN logo

Tutorial

Video Length: 31m
Subtitles By: Saskia Hiltemann
Description:
Training Material: Tutorial

Speaker

hexylena
Helena Rasche

Supporting Materials

GTN logo

Day 4

At the beginning of each day, say hi in Slack and let us know are getting started by answering the following icebreaker questions!

Icebreaker pictogram
Thursday Icebreaker Question


1. If you had a time machine, what is the first place & time you would visit? why?
OR
2. What is your favourite book, tv show, movie or game that you would recommend to others?

Post your answers in #general on Slack!



And of course please feel free to respond to anybody here, this channel is for socializing and getting to know each other :)

Note: Please do this every day if you would like to receive a certificate of attendance

Tutorial

Video Length: 14m
Subtitles By: Saskia Hiltemann
Description:
Training Material: Slides, Exercise

Speaker

Video Length: 57m
Subtitles By: We apologize for lack of captions on this video. If you are reliant on captions, please check back here soon.
Description:
Training Material: Slides, Exercise

Speaker

Supporting Materials

  • Slides: Pulsar
  • Exercise: Pulsar
  • Slack channel: #08-pulsar - Have question about the training? Did you run into a problem? Just wanna chat? Ask an Instructor on Slack!
  • Finished the session? - Let us know that you've finished it, and what you thought of it! On Slack: (Channel: #08-pulsar ). Thanks!
  • Enjoyed it? - Like the video on YouTube, Tweet (hashtag #usegalaxy), and follow the GTN on Twitter! @gxytraining
GTN logo

Tutorial

Video Length: 2m
Subtitles By: The Global GTN Community
Description:
Training Material: Slides, Exercise

Speaker

awspolly
These slides are narrated by AWS Polly.

Supporting Materials

GTN logo

Tutorial



Slides

Video Length: 2m
Subtitles By: The Global GTN Community
Description:
Training Material: Slides, Tutorial

Speaker

awspolly
These slides are narrated by AWS Polly.


Tutorial

Video Length: 73m
Subtitles By: Saskia Hiltemann, Helena Rasche
Description:
Training Material: Slides, Tutorial

Speaker

Supporting Materials

GTN logo

Tutorial

Video Length: 2m
Subtitles By: The Global GTN Community
Description:
Training Material: Slides

Speaker

awspolly
These slides are narrated by AWS Polly.

Supporting Materials

GTN logo

Tutorial

Video Length: 36m
Subtitles By: Simon Gladman, Helena Rasche
Description:
Training Material: tutorial

Speaker

Supporting Materials

  • tutorial: Upgrading Galaxy
  • Slack channel: #11-cyoa - Have question about the training? Did you run into a problem? Just wanna chat? Ask an Instructor on Slack!
  • Finished the session? - Let us know that you've finished it, and what you thought of it! On Slack: (Channel: #11-cyoa ). Thanks!
  • Enjoyed it? - Like the video on YouTube, Tweet (hashtag #usegalaxy), and follow the GTN on Twitter! @gxytraining
GTN logo

Day 5 - Choose Your OWN Adventure

At the beginning of each day, say hi in Slack and let us know are getting started by answering the following icebreaker questions!

Icebreaker pictogram
Friday Icebreaker Question


What has been you favourite part of this training week? And what are you looking forward to most during the rest of GCC (if you are attending)?

Post your answers in #general on Slack!



And of course please feel free to respond to anybody here, this channel is for socializing and getting to know each other :)

Note: Please do this every day if you would like to receive a certificate of attendance

Tutorial

Video Length: 5m
Subtitles By: Saskia Hiltemann
Description: This short video gives an overview of the worldwide Galaxy community, and different ways you can get involved! Video created by Beatriz Serrano-Solano.
Training Material: GalaxyProject Home, Galaxy servers, Galaxy Training Network, Support, Galaxy Publications, Galaxy Communities, Events, Mailing Lists, Galaxy Working Groups, GitHub, Gitter Chat, GTN Gitter, PaperCuts, GTN CoFest, Twitter, Twitter

Speaker

galaxycommunity
The Global GTN Community

Supporting Materials

GTN logo

Self-Study Tutorial

Supporting Materials

GTN logo

Tutorial

Video Length: 24m
Subtitles By: Helena Rasche, Saskia Hiltemann
Description:
Training Material: TIaaS Exercise

Speaker

hexylena
Helena Rasche

Supporting Materials

GTN logo

Tutorial

Video Length: 44m
Subtitles By: Anthony Bretaudeau, Helena Rasche
Description:
Training Material: Slides, Tutorial

Speaker

abretaud
Anthony Bretaudeau

Supporting Materials

GTN logo

Self-Study Tutorial

Supporting Materials

  • Exercise: Jenkins & Automation
  • Slack channel: #11-cyoa - Have question about the training? Did you run into a problem? Just wanna chat? Ask an Instructor on Slack!
  • Finished the session? - Let us know that you've finished it, and what you thought of it! On Slack: (Channel: #11-cyoa ). Thanks!
  • Enjoyed it? - Like the video on YouTube, Tweet (hashtag #usegalaxy), and follow the GTN on Twitter! @gxytraining
GTN logo

Self-Study Tutorial

Supporting Materials

  • Slides: Advanced Customisation
  • Slack channel: #11-cyoa - Have question about the training? Did you run into a problem? Just wanna chat? Ask an Instructor on Slack!
  • Finished the session? - Let us know that you've finished it, and what you thought of it! On Slack: (Channel: #11-cyoa ). Thanks!
  • Enjoyed it? - Like the video on YouTube, Tweet (hashtag #usegalaxy), and follow the GTN on Twitter! @gxytraining
GTN logo

Self-Study Tutorial

Supporting Materials

GTN logo

Self-Study Tutorial

Supporting Materials

  • Docs: Python 2 to Python 3!
  • Slack channel: #11-cyoa - Have question about the training? Did you run into a problem? Just wanna chat? Ask an Instructor on Slack!
  • Finished the session? - Let us know that you've finished it, and what you thought of it! On Slack: (Channel: #11-cyoa ). Thanks!
  • Enjoyed it? - Like the video on YouTube, Tweet (hashtag #usegalaxy), and follow the GTN on Twitter! @gxytraining
GTN logo

Self-Study Tutorial

Supporting Materials

  • Slides, Exercise: Tool Development
  • Slack channel: #11-cyoa - Have question about the training? Did you run into a problem? Just wanna chat? Ask an Instructor on Slack!
  • Finished the session? - Let us know that you've finished it, and what you thought of it! On Slack: (Channel: #11-cyoa ). Thanks!
  • Enjoyed it? - Like the video on YouTube, Tweet (hashtag #usegalaxy), and follow the GTN on Twitter! @gxytraining
GTN logo

Self-Study Tutorial

Supporting Materials

  • DCs, Rule based: Dataset Collections
  • Slack channel: #11-cyoa - Have question about the training? Did you run into a problem? Just wanna chat? Ask an Instructor on Slack!
  • Finished the session? - Let us know that you've finished it, and what you thought of it! On Slack: (Channel: #11-cyoa ). Thanks!
  • Enjoyed it? - Like the video on YouTube, Tweet (hashtag #usegalaxy), and follow the GTN on Twitter! @gxytraining
GTN logo

Self-Study Tutorial

Supporting Materials

  • Setting up, Exercise: Developing your own Training
  • Slack channel: #11-cyoa - Have question about the training? Did you run into a problem? Just wanna chat? Ask an Instructor on Slack!
  • Finished the session? - Let us know that you've finished it, and what you thought of it! On Slack: (Channel: #11-cyoa ). Thanks!
  • Enjoyed it? - Like the video on YouTube, Tweet (hashtag #usegalaxy), and follow the GTN on Twitter! @gxytraining
GTN logo

Tutorial

Video Length: 18m
Subtitles By: Catherine Bromhead
Description:
Training Material: Exercise

Speaker

Supporting Materials

  • Exercise: Storage management
  • Slack channel: #09-storage - Have question about the training? Did you run into a problem? Just wanna chat? Ask an Instructor on Slack!
  • Finished the session? - Let us know that you've finished it, and what you thought of it! On Slack: (Channel: #09-storage ). Thanks!
  • Enjoyed it? - Like the video on YouTube, Tweet (hashtag #usegalaxy), and follow the GTN on Twitter! @gxytraining
GTN logo

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Acknowledgements

This Global Galaxy course is only possible thanks to a Global network of instructors and institutes.

Presenters & Instructors & Facilitators & Community Caption Contributors

FilipposZ
Filippos Zacharopoulos
jennaj
Jennifer Hillman-Jackson
fpsom
Fotis E. Psomopoulos
MariaTsayo
Maria Tsagiopoulou
petrnovak
Petr Novák
annefou
Anne Fouilloux
kmurat1
Katarzyna Kamieniecka
hexylena
Helena Rasche
pvanheus
Peter van Heusden
ennovytje
Yvonne Hiltemann
fubar2
Ross Lazarus
malloryfreeberg
Mallory Freeberg
willemdek11
Willem de Koning
nsoranzo
Nicola Soranzo
timothygriffin
Timothy J. Griffin
blankenberg
Daniel Blankenberg
abretaud
Anthony Bretaudeau
jvanbraekel
Julien Van Braekel
ddan
Dinh Duy An Nguyen
ic4f
Sergey Golitsynskiy
nekrut
Anton Nekrutenko
shiltemann
Saskia Hiltemann
assuntad23
Assunta DeSanto
galaxycommunity
The Global GTN Community
kpoterlowicz
Krzysztof Poterlowicz
mvdbeek
Marius van den Beek
davelopez
David Lopez
rwinand
Raf Winand
andrewr
Andrew Rajczewski
cat-bro
Catherine Bromhead
miaomiaozhou88
Miaomiao Zhou
delphine-l
Delphine Lariviere
s3by01
Sébastien Fouilloux
eancelet
Estelle Ancelet

Institutions

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