The Galaxy Community

community events

A vibrant community of contributors is the reason this project exists. The Galaxy team alone cannot possibly maintain enough servers, wrap enough tools, teach enough workshops, implement all needed features, or answer every question on its own. This is why community is vital to our core mission - enabling reproducible research in data-rich sciences and beyond. Members within the Galaxy community are located all around the world and often form subgroups that differ in size (small versus large) and degree of privacy (public versus private). This page highlights these groups.

The Galaxy Community at GCC2019

GCC2019 in Freiburg, Germany, photo by Bérénice Batut

Galaxy Community Conference

In 2010 the National Science Foundation initiated a yearly gathering of Galaxy users and developers by providing the project with a grant supplement. Since then this gathering has grown into an annual event known as the Galaxy Community Conference (GCC). GCC alternates between North America and elsewhere, and provides a forum for sharing knowledge and building collaborations. There have been over 200 participants every year since 2012.

Galaxy Mentor Network

GMN logo

Galaxy Mentor Network (GMN) program is an initiative by the Galaxy Community to build her members in open source projects.

It is a two-month mentoring program designed for Galaxy community members to come together as mentors and mentees to achieve a goal, share knowledge and expertise, ask questions, receive feedback, network, and most of all, get support from peers(mentors) without having to wait for days for a response from the community via the Help Forum or communication channels.

Interacting communities with Galaxy

Conda and Bioconda

Bioconda logo

Conda is an open source package management system that is heavily used by Galaxy to manage tool dependencies and installations. Bioconda is a specific channel for Conda that distributes popular bioinformatics software, many of which have been wrapped by the Galaxy community.

Open Life Science

Open life science logo

Open Life Science (OLS) is an online mentoring & training program to help individuals and stakeholders in research to become Open Science ambassadors. Participants of this program learn essential knowledge required to create, lead, and sustain an Open Science project, connect with members across different communities, backgrounds, and identities by sharing their experiences and expertise.

Outreachy

Outreachy logo

Outreachy provides internships in open source and open science for people subject to systemic bias and impacted by underrepresentation in the technical industry where they are living. Outreachy internship projects may include programming, research, user experience, documentation, graphical design, data science, marketing, user advocacy, or event planning.

Bioconductor

Bioconductor logo

The mission of the Bioconductor project is to develop, support, and disseminate free open source software that facilitates rigorous and reproducible analysis of data from current and emerging biological assays. Bioconductor uses the R statistical programming language, and is open source and open development. It has two releases each year, and an active user community.

F1000Research

F1000Research logo

F1000Research enables scientists and scholars to publish their research rapidly, openly, and transparently via an author-centric platform. We publish research across all academic disciplines and in multiple formats, including original articles, data notes, software tool articles and method articles.

F1000Research operates a unique post-publication open peer review process, enabling authors to engage with their reviewers transparently, whilst also making the research available to a global audience as quickly as possible.

Regional Communities

Region Info Links
Arabic Community The Galaxy Arabic speaking community supports Galaxy activity for the Arabic speaking community and Arabic speaking regions of the world.
Australia Australian Galaxy community.
Czech Česká komunita Galaxy / Czech Galaxy Community.
Europe ELIXIR Galaxy Community.
Galaxy Europe.

France Galaxy in the French-speaking world.
India Indian Galaxy Community.
Japan Pitagora Galaxy Community.
The Netherlands Galaxy-NL in the Netherlands.
UK Galaxy in the United Kingdom.
Galaxy Español Galaxy in Spanish.
Galaxy Africa Galaxy African community.

Communities of practice

Topic Info Links
Metabolomics Community-sdriven metabolomics Galaxy service. The main aim is to give people a public space to discover and run metabolomics tools.
Ecology A web platform to get, process, analyze and visualize ecological data.
Genome Annotation A complete Galaxy instance for Genome Annotation.
Climate The Climate Science workbench is a comprehensive set of analysis tools and consolidated workflow.
Proteomics Galaxy-based platform for the functional analysis and the interpretation of proteomics and transcriptomics data in biomedical research.
Natural Language Processing An open, interoperable web service platform for natural language processing (NLP) research and development.
MicroGalaxy All things micro* in Galaxy. The official mailing list of the microGalaxy group.
Public Health Announcements and discussion in the Galaxy Public Health Community.
Small Scale Servers Admins of small scale Galaxy servers.
Machine Learning A comprehensive set of data preprocessing, machine learning, deep learning and visualisation tools, and consolidated workflows for end-to-end machine learning analysis
Materials Science A Galaxy workbench with tools and workflows for materials science, including muon spectroscopy.

Set up your own community

What if you can't find yourself in these lists of regional and/or community of practice? Galaxy welcomes new communities, please see here on how to set up your own.