UseGalaxy.eu Tool Updates for 2019-11-15
On 2019-11-15, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #161
ChemicalToolBox
- autodock_vina was updated to 65ffed035ca8
- autodock_vina_prepare_ligand was updated to 965badb456d4
- gmx_fep was updated to 19d1d4c30402
Convert Formats
- gffread was updated to 4dea02886337
- bam_to_scidx was updated to 408520e1ae1a
FASTA/FASTQ
- fasta_filter_by_length was updated to c8cd0a03db49
Gemini
- gemini_dump was updated to 187b57debbba
- gemini_fusions was updated to 8295781a3c27
- gemini_gene_wise was updated to 99d6e7b1b7f1
- gemini_interactions was updated to 527c8e4a356f
- gemini_load was updated to 269c40fdcccb
- gemini_lof_sieve was updated to be7ac09bc2fa
- gemini_mendel_errors was updated to dd963f00f297
- gemini_pathways was updated to 66bc68095012
- gemini_qc was updated to a875f940d8fd
- gemini_query was updated to ab195e756e5e
- gemini_recessive_and_dominant was updated to 69ec574f6f41
- gemini_region was updated to bb4a5f979906
- gemini_roh was updated to 91b4db3e6df4
- gemini_roh was updated to 93967598e18e
- gemini_set_somatic was updated to 230c975e7759
- gemini_stats was updated to ac761838cdaf
Proteomics
- eggnog_mapper was updated to a5a3bdd0954b
- hardklor was updated to 539f157784e7
Get Data
- ebi_metagenomics_run_downloader was updated to e2e9fae080ad
Mapping
- rgrnastar was updated to 41929aa1e7f3
Text Manipulation
- split_file_on_column was updated to b60f2452580e
Nanopore
- nanopolish_eventalign was updated to 0938217b3221
- nanopolish_methylation was updated to 02e3c674d917
- nanopolish_variants was updated to 639b3a5bb415
- nanopolish_variants was updated to bc79b5b0fe04
Graph/Display Data
- fasta_nucleotide_color_plot was updated to 0fba45ac3987
hca_sc_utils_viz
- dropletutils_read_10x was updated to f25f42dc256a
Data Managers
- data_manager_salmon_index_builder was updated to 6b0f2bdcc1b7
Variant Calling
- bcftools_call was updated to 01fd33bc2e75
- bcftools_call was updated to 3296c3680d96
- snpeff was updated to 36dc3690a82c
RNA Analysis
- deseq2 was updated to e5c8afac22a7
- trinity_abundance_estimates_to_matrix was updated to 08326e2e82f1
- trinity_contig_exn50_statistic was updated to 3cdcd5753218
- trinity_filter_low_expr_transcripts was updated to 42f93482524f
- trinity_run_de_analysis was updated to f3924bd07cba
- trinity_super_transcripts was updated to 6723249ce1bd
NCBI Blast
- taxonomy_krona_chart was updated to 020b3087d0b7
RAD-seq
- stacks_assembleperead was updated to bc108981ca68
- stacks_cstacks was updated to 5bd1418f4227
- stacks_cstacks was updated to dab92afa0c98
- stacks_denovomap was updated to 2b1dd7ab69f7
- stacks_genotypes was updated to 00f4a4e553ae
- stacks_procrad was updated to 57910d476be9
- stacks_pstacks was updated to 7ebc7d229deb
- stacks_refmap was updated to 4ee074ca88fb
- stacks_rxstacks was updated to 2360d8cf42f7
- stacks_sstacks was updated to 95e37a28704b
- stacks_ustacks was updated to b6de94f2edc0
Annotation
- gprofiler_convert was updated to e219aca2f9fc
- gprofiler_gost was updated to 51916b7025ba
- gprofiler_orth was updated to 89cf0828d89d
- gprofiler_random was updated to 39a063071667
- gprofiler_snpense was updated to f83a08dff6f0
- roary was updated to 809e42326fc2
SAM/BAM
- bam_to_sam was updated to f57df915aa10
- bamtools_filter was updated to 4fe8a75334c8
- sam_to_bam was updated to b77f7b516b17
- samtool_filter2 was updated to b7aa423007bf
- samtools_phase was updated to b5c3b1856370
- samtools_rmdup was updated to 586f9e1cdb2b
- ngsutils_bam_filter was updated to 49bf71fbc574