UseGalaxy.eu Tool Updates for 2021-03-16
On 2021-03-16, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #264
Text Manipulation
- diff was updated to 156d0908e232
- column_maker was updated to 02026300aa45
Quality Control
- multiqc was updated to 75c93c70d094
ChemicalToolBox
- ambertools_acpype was updated to c8cdde00b105
- ambertools_antechamber was updated to 04f6bb5fe7c7
- ambertools_parmchk2 was updated to 6aa2b60f3195
- ambertools_parmchk2 was updated to 7afe7044a2aa
- md_converter was updated to ccfbd956a2d3
- mmpbsa_mmgbsa was updated to 51023da731c0
- mmpbsa_mmgbsa was updated to 879662481176
- parmconv was updated to 2b82fc7bec67
- traj_selections_and_merge was updated to f4a1e92ca3d2
Mapping
- rgrnastar was updated to c772497b2c32
- rna_starsolo was updated to a6fba3d92531
Proteomics
- msstatstmt was updated to 5667ff6f7a40
- openms_openpepxl was updated to 40cc19c0dbd6
- openms_percolatoradapter was updated to e7881a82b56d
- openms_xfdr was updated to 81402a5e4173
- pepquery was updated to 5b5a9f59e2c7
- peptide_genomic_coordinate was updated to cb0378d2d487
- peptideshaker was updated to da885ca16cb2
Nanopore
- pycoqc was updated to 3a2f2e24c37e
Variant Calling
- get_hrun was updated to 84f70ce0b830
- strelka_germline was updated to 19481653a22f
Data Managers
- data_manager_fetch_ncbi_taxonomy was updated to 9de2fb1ce1fb
- data_manager_sam_fasta_index_builder was updated to 3e4d45aca422
- data_manager_build_kraken2_database was updated to 0eebe086fd58
- data_manager_fetch_busco was updated to 15b97817550a
- data_manager_humann2_database_downloader was updated to ff9cf22838d4
- data_manager_metaphlan2_database_downloader was updated to 83f07f40b200
Graph/Display Data
- jbrowse was updated to 4542035c1075
- pe_histogram was updated to bd1416eea1f0
Assembly
- purge_dups was updated to 29151e779524
Single-cell
- scanpy_cluster_reduce_dimension was updated to 35bc2eb568ed
- scanpy_filter was updated to f87ed6503715
- scanpy_inspect was updated to 9d33775ec67d
- scanpy_normalize was updated to 5342ce58cd1e
- scanpy_plot was updated to 6adf98e782f3
- scanpy_remove_confounders was updated to 80d4e2cac903
Metagenomic Analysis
- staramr was updated to 4b9a8031ab74
Metabolomics
- w4mclassfilter was updated to aae9fa9a7d4d
HiCExplorer
- hicexplorer_chicaggregatestatistic was updated to b53973719d7b
- hicexplorer_chicdifferentialtest was updated to 975b6a67e4b0
- hicexplorer_chicplotviewpoint was updated to 031872f8e2e0
- hicexplorer_chicqualitycontrol was updated to db4a82804126
- hicexplorer_chicsignificantinteractions was updated to 6001400eed99
- hicexplorer_chicviewpoint was updated to dbfd2cfc0f66
- hicexplorer_chicviewpointbackgroundmodel was updated to 628259b7ffb4
- hicexplorer_hicadjustmatrix was updated to a7fd644deda6
- hicexplorer_hicaggregatecontacts was updated to ee370ade24cd
- hicexplorer_hicaverageregions was updated to 03d7978293fe
- hicexplorer_hicbuildmatrix was updated to 9edf8894a22d
- hicexplorer_hiccomparematrices was updated to 80abd5e2922a
- hicexplorer_hiccompartmentspolarization was updated to ed3dea19c464
- hicexplorer_hicconvertformat was updated to 3e598b8e72e7
- hicexplorer_hiccorrectmatrix was updated to e4cb7809df61
- hicexplorer_hiccorrelate was updated to 340aa8042c7f
- hicexplorer_hicdetectloops was updated to c3f9037423bd
- hicexplorer_hicdifferentialtad was updated to c852ad97ba28
- hicexplorer_hicfindrestrictionsites was updated to 8823a9d45ed0
- hicexplorer_hicfindtads was updated to d404277cc87a
- hicexplorer_hichyperoptdetectloops was updated to dde6b320a34b
- hicexplorer_hicinfo was updated to 3a74a441b11f
- hicexplorer_hicmergedomains was updated to 6b9b4fd51308
- hicexplorer_hicmergeloops was updated to 94b552c6830a
- hicexplorer_hicmergematrixbins was updated to 03dd3c16ae4e
- hicexplorer_hicnormalize was updated to 05257e5d5016
- hicexplorer_hicpca was updated to 3b5b54ed6392
- hicexplorer_hicplotaverageregions was updated to 5fb461d15c31
- hicexplorer_hicplotdistvscounts was updated to e2971589184b
- hicexplorer_hicplotmatrix was updated to 7babd8a46fe0
- hicexplorer_hicplotsvl was updated to b75f87deaa15
- hicexplorer_hicplotviewpoint was updated to b637a1e3cb14
- hicexplorer_hicquickqc was updated to 9c5078f3926b
- hicexplorer_hicsummatrices was updated to 5aa5ef83f975
- hicexplorer_hictransform was updated to 9667ab8e2085
- hicexplorer_hicvalidatelocations was updated to 662109a754b5