EU Citations

Foxi1 regulates multipotent mucociliary progenitors and ionocyte specification through transcriptional and epigenetic mechanisms

Bowden, Sarah; Brislinger-Engelhardt, Magdalena Maria; Hansen, Mona; Andricek, Aisha; Temporal-Plo, Africa; Weber, Damian; Hägele, Sandra; Lorenz, Fabian; Litwin, Tim; Kreutz, Clemens; Walentek, Peter

SpeckSeq enables high-throughput functional stratification of MEFV variants in autoinflammatory diseases

Bronnec, Pauline; Dalmon, Sarah; Briand, Chloe; Allatif, Omran; Broly, Martin; Marcotte, Melissa; Lombardi, Gianluca; Barthes, Kevin; Martel, Nora; Hughes, Sandrine; Gillet, Benjamin; Milhavet, Florian; Atilgan, Aysima; Bachelez, Hervé; Palmeri, Serena; Prigione, Ignazia; Madrange, Marine; Savey, Léa; Moutschen, Michel; Jeru, Isabelle; El Moussaoui, Majdouline; Belot, Alexandre; Sbidian, Emilie; Carbone, Alessandra; Jamilloux, Yvan; Gattorno, Marco; Smahi, Asma; Georgin-Lavialle, Sophie; Boursier, Guilaine; Magnotti, Flora; Henry, Thomas

Association between molecular and quantitative variability in a tomato broad cross identified by sequence-specific markers developed from transcriptomic polymorphism for the small Heat Shock Protein (sHSP) cluster in chromosome six

Cacchiarelli, Paolo; Goytia Bertero, Valentina; Garcia Labari, Ignacio; Arce, Débora P.; Tapia, Elizabeth; Pratta, Guillermo R.

Complete Chloroplast Genome Assembly of Rubroshorea leprosula Wood from Indonesia for Phylogenetic and Conservation Studies

Fadilah, Ainun; Hikmat, Agus; Karlinasari, Lina; Dwiyanti, Fifi Gus; Pratama, Rahadian; Maulana, Faizal; Kamal, Irsyad; Syaputra, Dhika; Siregar, Iskandar Zulkarnaen

ERGA-BGE genome of Erebia palarica Chapman, 1905: a montane butterfly endemic to North-West Spain

Vila Taboada, Marta; Torrado-Blanco, Laura; Ryrholm, Nils; Romero-Pedreira, David; Conejero, María; Böhne, Astrid; Monteiro, Rita; Marcussen, Thomas; A. Oomen, Rebekah; H. Struck, Torsten; Aguilera, Laura; Gut, Marta; Câmara Ferreira, Francisco; Cruz, Fernando; Gómez-Garrido, Jèssica; S. Alioto, Tyler; Haggerty, Leanne; Martin, Fergal; Bortoluzzi, Chiara

No evidence for the putative nitric oxide sensor NsrR as a key regulator of magnetosome formation in Magnetospirillum gryphiswaldense

Woller, Alexandra; Uebe, René; Schüler, Dirk

The genomic configurations driving antimicrobial resistance and virulence in colistin resistant Pseudomonas aeruginosa from an Egyptian Tertiary Oncology Hospital

AbdulHak, Asmaa; Zedan, Hamdallah H; El-Mahallawy, Hadir A; Sayed, Ahmed A; Mohamed, Hend O; Zafer, Mai M

Cladistic Relationships and Landscape Genetics of the Endangered Indian Peacock Softshell Turtle Nilssonia hurum (Gray, 1830): Implications for Strategic Conservation Planning

Abedin, Imon; Putra, Angkasa; Kang, Hye-Eun; Singh, Arunima; Singh, Shailendra; Singha, Hilloljyoti; Kim, Hyun-Woo; Kundu, Shantanu

Lineages to landscapes: mitogenomic insights and climate refugia informing proactive conservation of the endangered Tricarinate Hill Turtle (Melanochelys tricarinata) in the Indian subcontinent

Abedin, Imon; Putra, Angkasa; Kang, Hye-Eun; Singh, Arunima; Singh, Shailendra; Jung, Won-Kyo; Kim, Hyun-Woo; Kundu, Shantanu

De novo assembly and annotation of the pantranscriptome of Astyanax lacustris on the liver and pituitary-gonadal axis

Aciole Barbosa, David; Branco, Giovana Souza; Dal'Olio Gomes, Aline; Tolussi, Carlos Eduardo; Muñoz-Peñuela, Marcela; Araújo, Bruno C.; Silva, Iuri Batista; Moreira, Renata Guimarães; Nunes, Luiz R.; Menegidio, Fabiano B.

De Novo Assembly and Annotation of the Pantranscriptome of Astyanax Lacustris on the Liver and Pituitary-Gonadal Axis

Aciole Barbosa, David; Branco, Giovana Souza; Gomes, Aline Dal Olio; Tolussi, Carlos Eduardo; Muñoz-Peñuela, Marcela; Araujo, Bruno; Silva, Iuri Batista; Moreira, Renata Guimarães; Nunes, Luiz; Menegidio, Fabiano Bezerra

ERGA-BGE reference genome of Lewinskya acuminata, a common epiphytic Mediterranean moss with disjunct populations in California and Ethiopia

Aguado-Ramsay, Pablo; Lara, Francisco; Draper, Isabel; Conejero, Maria; Böhne, Astrid; Monteiro, Rita; Marcussen, Thomas; H. Struck, Torsten; A. Oomen, Rebekah; Genomescope Sequencing Team; Moussy, Alice; Cruaud, Corinne; Labadie, Karine; Demirdjian, Lola; Téodori, Emilie; Wincker, Patrick; H. Oliveira, Pedro; Aury, Jean-Marc; Bortoluzzi, Chiara

Advancing bioinformatics capacity through Nextflow and nf-core: lessons from an early-to mid-career researchers–focused program at The Kids Research Institute Australia

Agudelo-Romero, Patricia; Conradie, Talya; Caparros-Martin, Jose Antonio; Martino, David Jimmy; Kicic, Anthony; Stick, Stephen Michael; Hakkaart, Christopher; Sharma, Abhinav

Discovery of phage CSF, a novel generalist bacteriophage targeting multidrug-resistant and potentially pathogenic Staphylococcus spp. and Mammaliicoccus spp.

Ahmad, Faizan; Viana, Vitor Emanuel Lanes; Rezende, Rafael Reis; Martuchelle, Samuel Sathler; Cabral, Anderson Souza; Andrade-Oliveira, Ana Luisa; Carvalho, Isabella Monteiro; Almada Estanislau, Sandy; Rasheed, Nohman; Zerbini, Poliane Alfenas; Pereira, Monalessa Fábia; Giambiagi-deMarval, Marcia; Rossi, Ciro César

Molecular Epidemiology: Prevalence of Human Cutaneous Leishmaniasis in Palestine in the Period between 2016 and 2024 Using Next Generation Sequencing

Al-Jawabreh, Hanan; Thesis, M

Giant mitogenomes in Rhynchospora are a result of nuclear gene and retrotransposon insertions in intergenic spaces

Almeida, Cicero; Marques, André

P-346 Endometriosis-associated infertility changes the microRNA profile of cumulus cells with a notably pronounced effect on oocytes that failed fertilisation

Almiñana Brines, C; Makieva, S; Bauersachs, S; Juano, M D; Xie, M; Velasco, A; Cervantes, N; Ulbrich, S E; Leeners, B

Endometriosis-associated infertility alters the microRNA signatures of cumulus cells with a particularly pronounced effect in oocytes that failed fertilization

Almiñana, Carmen; Makieva, Sofia; Bauersachs, Stefan; Juano, Mara D; Xie, Min; Velasco, Ana; Cervantes, Natalia; Spalinger, Marianne R; Ulbrich, Susanne E; Leeners, Brigitte

Unveiling Genetic Basis Associated With Manganese Content in Turkish Common Bean (Phaseolus vulgaris L.) Germplasm Through a Genome-Wide Association Study

Altaf, Muhammad Tanveer; Nadeem, Muhammad Azhar; Ayten, Sefa; Aksoy, Emre; Sönmez, Ferit; Çiftçi, Vahdettin; Baloch, Faheem Shehzad

The Complete Mitochondrial Genome Assembly of Bali Cattle (Bos Javanicus) Using Oxford Nanopore Long-Read Sequencing Technology

Anwar, Saiful; Shidiq, Fajrin; Noor, Ronny Rachman; Semiadi, Gono; Dharmayanthi, Anik Budhi; Furqon, Ahmad; Khaerunnisa, Isyana; Sutikno, Sutikno; Margawati, Endang Tri; Jakaria, Jakaria

A type 4 resistant potato starch alters the cecal microbiome, gene expression and resistance to colitis in mice fed a Western diet based on NHANES data

A. Pletsch, Elizabeth; D. Dawson, Harry; Cheung, Lumei; S. Ragonese, Jack; T. Chen, Celine; D. Smith, Allen

Transcriptome Network Biology Reveals the Neuroprotective Potential of Rosmarinic Acid Against Frontotemporal Dementia

Arif, Amaan; Garg, Prekshi; Srivastava, Prachi

Staphylococcus Aureus AgrA Modulators from South African Antimicrobial Plants.

Aruwa, Christiana Eleojo; Sabiu, Saheed

Exploring effector candidates in Rhynchosporium commune: insights into their expression dynamics during barley infection

Asadi, Samin; Soorni, Aboozar; Mehrabi, Rahim; Talebi, Majid

ERGA-BGE reference genome of Eunicella cavolini, an IUCN Near Threatened Gorgonian of the Mediterranean Sea

Aurelle, Didier; Guillemain, Dorian; Zuberer, Frédéric; Malengros, Denys; Böhne, Astrid; Monteiro, Rita; Marcussen, Thomas; Struck, Torsten H.; A. Oomen, Rebekah; Genoscope Sequencing Team; Moussy, Alice; Cruaud, Corinne; Labadie, Karine; Demirdjian, Lola; Belser, Caroline; Wincker, Patrick; H. Oliveira, Pedro; Aury, Jean-Marc; Bortoluzzi, Chiara

A Putative Interaction between the Transmembrane Domains of Streptococcus pyogenes Sortase A and Its Endogenous Substrate M Protein Revealed by Molecular Dynamics Simulations

Avery, Nathan G.; Tahti, Elise F.; Spiegel, Paul Clinton; Antos, John M.; McCarty, James; Amacher, Jeanine F.

Investigating genetic diversity within <i>Cryptosporidium parvum</i> outbreaks using multi-locus variable number tandem repeat analysis

Bacchetti, Ross; McCormack, Paula; Connelly, Lisa; Brown, Derek J; Chaput, Dominique L; Alexander, Claire L

Pharmacophore modeling and QSAR analysis of anti-HBV flavonols

Baei, Basireh; Askari, Parnia; Askari, Fatemeh Sana; Kiani, Seyed Jalal; Mohebbi, Alireza

The repressor Capicua is a barrier to lung tumor development driven by Kras/Trp53 mutations

Ballesteros-González, Irene; Hernández-Navas, Iván; Brehey, Oksana; Lechuga, Carmen G.; Salmón, Marina; Scotece, Morena; Velasco-Vicente, Ricardo; Flores-Gómez, Alejandra A.; Cebriá, Antonio; Simón-Carrasco, Lucía; Jiménez, Gerardo; Musteanu, Monica; Guerra, Carmen; Domínguez, Orlando; Caleiras, Eduardo; Blanco-Aparicio, Carmen; Pons, Tirso; Ferrer, Irene; Paz-Ares, Luis; Torres-Ruiz, Raul; Rodríguez-Perales, Sandra; Barbacid, Mariano; Drosten, Matthias

Arabidopsis thaliana FANCONI ANAEMIA I (FANCI) has roles in the repair of interstrand crosslinks and CRISPR-Cas9 induced DNA double strand breaks

Balobaid, Atheer; Waterworth, Wanda M; Vila Nova, Sophya F; Causier, Barry; Sharma, Vinay; Park, Madeline R; Pandey, Manish K; West, Christopher E

A novel broad-spectrum bacteriophage cocktail against methicillin-resistant Staphylococcus aureus: Isolation, characterization, and therapeutic potential in a mastitis mouse model

Banar, Maryam; Kamyab, Haniyeh; Torkashvand, Narges; Salehi, Taghi Zahraei; Sepehrizadeh, Zargham; Shahverdi, Ahmad Reza; Pourmand, Mohammad Reza; Yazdi, Mohammad Hossein

Mutations in TAC1B drive increased CDR1 and MDR1 expression and azole resistance in Candida auris

Barker, Katherine S.; Santana, Darian J.; Zhang, Qing; Peters, Tracy L.; Rybak, Jeffrey M.; Morschhäuser, Joachim; Cuomo, Christina A.; Rogers, P. David

The role of DNA content in shaping chromatin architecture and gene expression

Barragán-Rosillo, Alfonso Carlos; Chávez Montes, Ricardo A.; Herrera-Estrella, Luis

Genomic insights into a colonization-infection progression by a carbapenemase-producing Klebsiella quasipneumoniae K1 serotype

Barroso, Marlon do Valle; Oshiro, Beatriz dos Santos; Nogueira, Mara Corrêa Lelles; Casella, Tiago

Positive impact of hydroponics and artificial light on yield and quality of wheat

Bassu, Simona; Eichelsbacher, Sebastian; Giunta, Francesco; Motzo, Rosella; Dawid, Corinna; Gastl, Martina; Schloter, Michael; Scherf, Katharina A.; Hör, Stefan; De Souza, Yuri Pinheiro Alves; Schulz, Stefanie; Stark, Timo D.; Mohler, Volker; Asseng, Senthold

Gene expression alterations in testicular biopsies from males with spermatogenesis arrest identified by transcriptome analysis

Batiha, Osamah; Al-Zoubi, Esra'a; Almomani, Rowida; Al Smadi, Mohammad A; Alrawabdeh, Sura; Alshokaibi, Omar; Abu-Farsakh, Hussam; Alkhateeb, Abedalrhman; Abu-Halima, Masood

The suberin transporter StABCG1 is required for barrier formation in potato leaves

Benatto Perino, Elvio Henrique; Smolka, Ulrike; Gorzolka, Karin; Grützner, Ramona; Marillonnet, Sylvestre; Vahabi, Khabat; Rosahl, Sabine

Changes in healthy Wistar rat gut microbiome by short-term dietary cava lees intervention

Berlanga, Mercedes; Martín-García, Alba; Guerrero, Ricardo; Riu-Aumatell, Montserrat; López-Tamames, Elvira

Disentangling Gut Bacterial Community Patterns in Cryptocercus punctulatus and Comparing Their Metagenomes with Other Xylophagous Dyctioptera Insects

Berlanga, Mercedes; Miñana-Galbis, David; Guerrero, Ricardo

A homozygous human WNT11 variant is associated with laterality, heart and renal defects

Berns, Henrike; Weber, Damian; Haas, Maximilian; Bakey, Zeineb; Brislinger-Engelhardt, Magdalena Maria; Schmidts, Miriam; Walentek, Peter

Molecular markers of stress in the sea urchin embryo test: Analysing the effect of climate change and pollutant mixtures on Paracentrotus lividus larvae

Bertucci, Juan Ignacio; Blanco Osorio, Angie; Vidal-Liñán, Leticia; Bellas, Juan

Integrated Morphological and Genome Redescription of Leidyana Gryllorum in Acheta Domesticus: Uncovering Gregarine Diversity in Gryllidae

Bessette, Edouard; Vitt Meyling, Nicolai; Williams, Bryony A. P.

TAF2 condensation in nuclear speckles links basal transcription factor TFIID to RNA splicing factors

Bhuiyan, Tanja; Arecco, Niccolò; Sanchez, Paulina Karen Mendoza; Kim, Juhyeong; Schwan, Carsten; Weyrauch, Sophie; Nizamuddin, Sheikh; Prunotto, Andrea; Tekman, Mehmet; Biniossek, Martin L.; Knapp, Bettina; Koidl, Stefanie; Drepper, Friedel; Huesgen, Pitter F.; Grosse, Robert; Hugel, Thorsten; Arnold, Sebastian J.

Resolution of a T1-Like Bacteriophage Outbreak by Receptor Engineering

Black, Katrina A.; Nguyen, Julie V.; Ramsey, Jolene R.; Tovey, Jack C.; Cameron, Daniel L.; Alexandrovics, Jack; Glukhova, Alisa; Papenfuss, Anthony T.; Call, Melissa J.; Young, Ryland; Call, Matthew E.

The genome sequence of the Common Buzzard, &lt;i&gt;Buteo buteo&lt;/i&gt; (Linnaeus, 1758)

Blows, Elizabeth; Natural History Museum Genome Acquisition Lab; Darwin Tree of Life Barcoding collective; Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team; Wellcome Sanger Institute Scientific Operations: Sequencing Operations; Wellcome Sanger Institute Tree of Life Core Informatics team; Tree of Life Core Informatics collective; Darwin Tree of Life Consortium

Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection

Bogaerts, Bert; Van Braekel, Julien; Van Uffelen, Alexander; D’aes, Jolien; Godfroid, Maxime; Delcourt, Thomas; Kelchtermans, Michael; Milis, Kato; Goeders, Nathalie; De Keersmaecker, Sigrid C. J.; Roosens, Nancy H. C.; Winand, Raf; Vanneste, Kevin

ERGA-BGE genome of Dendarus foraminosus: an IUCN Least Concern darkling beetle endemic to Crete (Greece)

Bolanakis, Giannis; Karakasi, Danae; Trichas, Apostolos; Böhne, Astrid; Monteiro, Rita; Fernández, Rosa; Escudero, Nuria; Bitzilekis, Eleftherios; Stratakis, Manos; Lymberakis, Petros; Poulakakis, Nikolaos; Genoscope Sequencing Team; Moussy, Alice; Cruaud, Corinne; Labadie, Karine; Demirdjian, Lola; Duprat, Simone; Téodori, Emilie; Wincker, Patrick; H. Oliveira, Pedro; Aury, Jean-Marc; Haggerty, Leanne; Sinha, Swati; Martin, Fergal; Bortoluzzi, Chiara

ERGA-BGE genome of Dailognatha quadricollis, an East Mediterranean darkling beetle

Bolanakis, Giannis; Karakasi, Danae; Bitzilekis, Eleftherios; Stratakis, Manos; Trichas, Apostolos; Lymberakis, Petros; Poulakakis, Nikos; Böhne, Astrid; Monteiro, Rita; Fernández, Rosa; Escudero, Nuria; Genoscope Sequencing Team; Moussy, Alice; Cruaud, Corinne; Labadie, Karine; Demirdjian, Lola; Téodori, Emilie; Wincker, Patrick; H. Oliveira, Pedro; Aury, Jean-Marc; Bortoluzzi, Chiara

Complete genome and comparative analysis of Xanthomonas oryzae pv. oryzae isolated from northern Thailand

Boondech, Atirada; Ainmani, Phatthira; Khieokhajonkhet, Anurak; Boonsrangsom, Thanita; Pongcharoen, Pongsanat; Rungrat, Tepsuda; Sujipuli, Kawee; Ratanasut, Kumrop; Aeksiri, Niran

Meta-analysis of RNA-Seq datasets allows a better understanding of P. tricornutum cellular biology, a requirement to improve the production of Biologics

Boulogne, Isabelle; Toustou, Charlotte; Bardor, Muriel

Microcystin-LR aerosol exposure increases inflammatory drivers of asthma, Evidence of an NF-κB amplification mechanism

Breidenbach, Joshua D.; Timalsina, Bivek; French, Benjamin W.; Stanoszek, Lauren; Lavik, John-Paul; Breidenbach, Irum S.; Shrestha, Upasana; Kleinhenz, Andrew; Lad, Apurva; Dube, Prabhatchandra; Zhang, Shungang; Faleel, Dhilhani; Wooten, R. Mark; Willey, James C.; Hammersley, Jeffrey R.; Modyanov, Nikolai N.; Malhotra, Deepak; Dworkin, Lance D.; Haller, Steven T.; Kennedy, David J.

Patient-derived tumoroids from CIC::DUX4 rearranged sarcoma identify MCL1 as a therapeutic target

Breunis, Willemijn; Brack, Eva; Ehlers, Anna C.; Bechtold, Ingrid; Kisele, Samanta; Wurth, Jakob; Mous, Lieke; Zabele, Dorita; Steffen, Fabio; Zahnow, Felina; Britschgi, Christian; Bankel, Lorenz; Rothermundt, Christian; Vetter, Cornelia; Müller, Daniel; Botter, Sander; Pauli, Chantal; Bode, Peter; Rinner, Beate; Bourquin, Jean-Pierre; Roessler, Jochen; Grünewald, Thomas G. P.; Schäfer, Beat W.; Surdez, Didier; Wachtel, Marco

Temporal control of progenitor competence shapes maturation in GABAergic neuron development in mice

Bright, Ann Rose; Kotlyarenko, Yana; Neuhaus, Florian; Rodrigues, Diana; Feng, Chao; Peters, Christian; Vitali, Ilaria; Dönmez, Elif; Myoga, Michael H.; Dvoretskova, Elena; Mayer, Christian

Collective oscillatory signaling in Dictyostelium discoideum acts as a developmental timer initiated by weak coupling of a noisy pulsatile signal

Brimson, Christopher A.; Baines, Robert; Sams-Dodd, Elisabeth; Stefanescu, Ioanina; Evans, Bethany; Kuwana, Satoshi; Hashimura, Hidenori; Sawai, Satoshi; Thompson, Christopher R. L.

Longitudinal Immunoprofiling of the CD8⁺ T-Cell Response in SARS-CoV-2 mRNA Vaccinees and COVID-19 Patients

Brunetti, Jesús Emanuel; Escudero-Pérez, Beatriz; Lasala, Fátima; Rivas, Gonzalo; Mancheño-Losa, Mikel; Rial-Crestelo, David; Lora-Tamayo, Jaime; Cadar, Dániel; Carroll, Miles; Delgado, Rafael; Muñoz-Fontela, César; Rodríguez, Estefanía

Trichosporon austroamericanum Infections among Hospitalized Patients, France, 2022-2024

Burel, Emilie; Sartor, Catherine; Moal, Valérie; Bossi, Vincent; Sevestre, Jacques; Solignac, Justine; Charrel, Rémi; Desnos-Ollivier, Marie; Ranque, Stéphane; Menu, Estelle

ERGA-BGE Genome of the viperine water snake (Natrix maura): a key species for evolutionary insights of freshwater snakes

Carranza, Salvador; Fernández-Guiberteau, Daniel; Blasón, Laura; Tulloch, Sergi; Monteiro, Rita; Böhne, Astrid; Fernández, Rosa; Escudero, Nuria; Aguilera, Laura; Gut, Marta; Alioto, Tyler S; Câmara Ferreira, Francisco; Gómez-Garrido, Jèssica; Cruz, Fernando; Sinha, Swati; Haggerty, Leanne; Martin, Fergal; Brown, Tom

Novel Insights into the Nobilamide Family from a Deep-Sea Bacillus: Chemical Diversity, Biosynthesis and Antimicrobial Activity Towards Multidrug-Resistant Bacteria

Casella, Vincenza; Della Sala, Gerardo; Scarpato, Silvia; Buonocore, Carmine; Ragozzino, Costanza; Tedesco, Pietro; Coppola, Daniela; Vitale, Giovanni Andrea; Pascale, Donatella; Palma Esposito, Fortunato

Ribonuclease activity undermines immune sensing of naked extracellular RNA

Castellano, Mauricio; Blanco, Valentina; Li Calzi, Marco; Costa, Bruno; Witwer, Kenneth; Hill, Marcelo; Cayota, Alfonso; Segovia, Mercedes; Tosar, Juan Pablo

Comparative Mitogenomics of Pedetontus and Pedetontinus (Insecta: Archaeognatha) Unveils Phylogeny, Divergence History, and Adaptive Evolution

Cen, Wei; Yang, Ting; Li, Jia-Wen; Yu, Dan-Na; Storey, Kenneth B.; Zhang, Jia-Yong

Morpho-Molecular Discordance and Cryptic Diversity in Jumping Bristletails: A Mitogenomic Analysis of Pedetontus silvestrii (Insecta: Archaeognatha: Machilidae)

Cen, Wei; Li, Jia-Wen; He, Jia-Tao; Chen, Xin-Yu; Li, Luo-Ying; Storey, Kenneth B.; Yu, Dan-Na; Zhang, Jia-Yong

Genomic characterization and comparative analysis of antibiotic resistance and virulence in Bangladeshi and global Klebsiella pneumoniae ST48 strains

Chaity, Sudipta Chowdhury; Hosen, Md Arman; Rahman, Sabita Rezwana; Khan, Md Abu Sayem

Bacillus subtilis as cell factory for enhanced production of the biopolymer precursor pyridine-2,6-dicarboxylic acid

Chen, Taichi; Uzunovic, Haris; Brul, Stanley; Hugenholtz, Jeroen

Comparative mitogenomics of the eulipotyphlan species (Mammalia, Eulipotyphla) provides novel insights into the molecular evolution of hibernation

Chen, Lijia; Yang, Guang; Chai, Simin

Developing Bacillus subtilis as cell factory for the production of the natural biocontrol compound pulcherrimin

Chen, Taichi; Uzunovic, Haris; Brul, Stanley; Hugenholtz, Jeroen

High-light adaptation in Synechocystis by accumulating NDH proteins and depleting specific phycobilisome linker proteins

Chen, Weiyang; Abdel-Salam, Eslam; Dann, Marcel; Ott, Caroline; Schwenkert, Serena; Leister, Dario

Terrestrial Adaptation in Chelonoidis vicina as Revealed Based on Analysis of the Complete Mitochondrial Genome

Chen, Yao; Wang, Xibao; Wu, Xiaoyang; Shang, Yongquan; Wei, Qinguo; Cai, Haotian; Sha, Weilai; Qi, Yan; Liu, Shuli; Zhang, Honghai

Evolutionary biology of Raphitoma Bellardi, 1847 (Neogastropoda, Conoidea)

Chiappa, Giacomo

Metagenomic analysis and genomic characterization of enterovirus A76 and Norovirus GI.6[P11] co-infection in a patient with acute gastroenteritis in Thailand

Chuchaona, Watchaporn; Izquierdo-Lara, Ray W.; Schapendonk, Claudia M. E.; Khongwichit, Sarawut; Koopmans, Marion P. G.; Graaf, Miranda; Poovorawan, Yong

De novo transcriptome assembly and functional annotation supports potential biotechnological applications for the non-model thraustochytrid Ulkenia visurgensis Lng2

Contreras, Pedro; Fica-León, Víctor; Navarrete, José; Oviedo, Claudia

Comparación genómica de especies de klebsiella secuenciadas en Ecuador: resistencia y diversidad

Córdova Bastidas, Daniel Alejandro

Application of MSB selective enrichment followed by amplicon MinION sequencing for multipathogen detection in smoked salmon

Costa-Ribeiro, Ana; Lamas, Alexandre; Prado, Marta; Garrido-Maestu, Alejandro

Olfactory specialization in the Senegalese sole (Solea senegalensis): CO2 acidified water triggers nostril-specific immune processes

Costa, Rita A.; Hubbard, Peter; Manchado, Manuel; Power, Deborah M.; Velez, Zélia

In silico analysis of lncRNA-miRNA-mRNA signatures related to Sorafenib effectiveness in liver cancer cells

Cruz-Ojeda, Patricia de la; Parras-Martínez, Ester; Rey-Pérez, Raquel; Muntané, Jordi

Characterization of Newly Isolated Rosenblumvirus Phage Infecting Staphylococcus aureus from Different Sources

Cunha, Paloma Cavalcante; Souza, Pedro Samuel; Rosseto, Ana Julia Dill; Rodrigues, Isabella Ribeiro; Dias, Roberto Sousa; Silva Duarte, Vinícius; Porcellato, Davide; Silva, Cynthia Canêdo; Paula, Sérgio Oliveira

Revisiting classical <i>Escherichia coli</i> cell division mutants by whole-genome sequencing

Dahdouh, Elias; García-Pérez, Isabel; Reyes-Zuñagua, Diana Soledad; Mingorance, Jesús; Vicente, Miguel

Understanding Palladium Ion Induced Bioelectrocatalysis in Shewanella oneidensis MR-1 through Electrochemical and Genetic Interrogations

Dantanarayana, Ashwini; Beaver, Kevin; Van Devener, Brian; Chandler, Nancy B.; Minteer, Shelley D.

Uncovering Anti-Melanoma Mechanisms of Bambusa stenostachya Leaf Compounds via Network Pharmacology and Molecular Docking

Darilag, Gen Maxxine C; Liu, Hsuan-Chieh; Hsieh, Cheng-Yang; Tayo, Lemmuel L; Talubo, Nicholas Dale D; Yang, Shu-Ching; Chang, Ching-Hui; Huang, Ying-Pin; Lee, Shih-Chi; Liu, Yung-Chuan; Tsai, Po-Wei

Carbon monoxide-oxidising Pseudomonadota on volcanic deposits

Dawson, Robin A; Fantom, Nicola; Martin-Pozas, Tamara; Aguila, Patricia; King, Gary M; Hernández, Marcela

Characterisation of Ornithobacterium hominis colonisation dynamics and interaction with the nasopharyngeal microbiome in a South African birth cohort

De Allende, Celine; Salter, Susannah; Brigg, Siobhan; Claassen-Weitz, Shantelle; Mwaikono, Kilaza; Workman, Lesley; Zar, Heather; Nicol, Mark; Parkhill, Julian; Dube, Felix

First report of Moraxella oculi in Brazil in an infectious bovine keratoconjunctivitis outbreak

Carvalho, Clarissa Vidal; Domingues, Robert; Carvalho Coutinho, Cinthia; Brito Silva Honório, Nicole Tafnes; Lima Reis Faza, Daniele; Barbosa Ferreira-Machado, Alessandra; Carvalho, Wanessa Araújo; Gaspar, Emanuelle Baldo; Martins, Marta Fonseca

First Assembly of a Draft Genome of the Critically Endangered Northern Muriqui (Brachyteles hypoxanthus, Primates, Atelidae) Including Non-Invasive Genotyping Strategies for the Species

Melo-Ximenes, Amanda Alves; Batista, Romina; Corvalán, Leonardo Carlos Jeronimo; Marques-Bonet, Tomas; Kuderna, Lukas; Farh, Kyle; Rogers, Jeffrey; Kaizer, Mariane da Cruz; Boubli, Jean Philippe; Melo, Fabiano Rodrigues; Nunes, Rhewter; Telles, Mariana Pires de Campos

Comprehensive mapping of transcription terminator Rho utilization (Rut) sites across the Bacillus subtilis genome

Delaleau, Mildred; Bidnenko, Vladimir; Eveno, Eric; Kostova, Gergana; Black, Johnathan C; McGovern, Stephen; Pellegrini, Olivier; Dérozier, Sandra; Jules, Matthieu; Condon, Ciaran; Durand, Sylvain; Bidnenko, Elena; Boudvillain, Marc

Flow Cytometric Challenges in Plasmacytoid Dendritic Cell (pDC) Identification: Limitation of BDCA-4 (CD304)-Based Gating

Demeter, Sarolta; Fekete, Tünde; Scholtz, Beáta; Veréb, Zoltán; Kemény, Lajos; Bácsi, Attila; Pázmándi, Kitti

Identification of Toxoplasma gondii antigenic proteins using an in vivo approach and in silico investigation of their polymorphism

Denis, J.; Gommenginger, C.; Beal, L.; Cimon, B.; Deleplancque, A. S.; Fricker Hidalgo, H.; L'Ollivier, C.; Paris, L.; Pelloux, H.; Pomares, C.; Houze, S.; Pfaff, A. W.; Villena, I.; Villard, O.

Microbial confrontations trigger broad array synthesis of human-toxic secondary metabolites

Devasahayam, Bennet

A Clinical Metaproteomics Workflow Implemented within Galaxy Bioinformatics Platform to Analyze Host-Microbiome Interactions Underlying Human Disease

Do, Katherine; Mehta, Subina; Wagner, Reid; Griffin, Timothy J.; Jagtap, Pratik D.

Multiple factors contribute to female dominance in migratory bioflows

Doyle, Toby D.; Poole, Oliver M.; Barnes, Jaimie Christopher; Hawkes, Will Leo S.; Jimenez Guri, Eva; Wotton, Karl R.

Rapid pan-biodiversity lifeform and genomic diversity detection from shotgun sequencing of air eDNA

Duffy, David J.; McCauley, Mark; Nousias, Orestis; Stammnitz, Maximilian R.; Farrell, Jessica A.; Koda, Samantha A.; Summers, Victoria; Eastman, Catherine B.; Duffy, Fiona G.; Duffy, Isabelle J.; Whilde, Jenny

Sero-Molecular Markers and Genetic Diversity of Hepatitis B Virus Isolated From Hemodialysis Patients From Jenin District, West Bank, Palestine

Dumaidi, Kamal; Al-Jawabreh, Amer; Zraiqi, Areej; Zaid, Jana; Ereqat, Suhair; Salami, Nabeel; Nasereddin, Abedelmajeed

In silico expression analysis of germin-like protein genes from rice cultivar Nipponbare

Durrani, Irfan Safdar; Asim, Noreen; Jan, Asad; Nissa, Iffat U.; Shah, Syed Tanveer; Shah, Syed Jehangir; Basit, Abdul; Mohamed, Heba I.

Whole Genome Sequencing of Neolamarckia macrophylla (Roxb.) Bosser and Neolamarckia cadamba (Roxb.) Bosser from Indonesia: A vital resource for completing chloroplast genomes and mining microsatellite markers

Dwiyanti, Fifi Gus; Kamal, Irsyad; Pratama, Rahadian; Syaputra, Dhika; Rustam, Evayusvita; Damayanti, Ratna Uli; Siregar, Iskandar Z.; Sudrajat, Dede J.

BlueEdge neural network approach and its application to automated data type classification in mobile edge computing

Elmobark, Nagwa; El-Ghareeb, Haitham; Elhishi, Sara

Assessing the influence of isolation techniques on NK cell transcriptomic profiles

ElNouty, Rana; Moustafa, Ahmed; Mostafa, Maha; Ouf, Amged; Abou-Aisha, Khaled; Rady, Mona

Downregulation of TCF19 and ATAD2 causes endothelial cell cycle arrest at the transition from cardiac hypertrophy to heart failure

Erny, Elias; Koentges, Christoph; Mukherjee, Debanjan; Wirth, Luisa; Kamaras, Christos; Zell, Franziska; Hossfeld, Madelon; Groß, Olaf; Lother, Achim

Microbiota Composition of Buffalo Colostrum and Characterization of Potential Probiotic Bacteria With High Exopolysaccharide Production and Cholesterol Assimilation Capacity

Ertürkmen, P.

Case–Control Study of Factors Associated with Hemolytic Uremic Syndrome among Shiga Toxin–Producing Escherichia coli Patients, Ireland, 2017–2020

Espadinha, Diana; Brady, Melissa; Brehony, Carina; Hamilton, Douglas; O’Connor, Lois; Cunney, Robert; Cotter, Suzanne; Carroll, Anne; Garvey, Patricia; McNamara, Eleanor

The Extremely Low Mechanical Force Generated by Nano-Pulling Induces Global Changes in the Microtubule Network, Nuclear Morphology, and Chromatin Transcription in Neurons

Falconieri, Alessandro; Da Palmata, Lorenzo; Cappello, Valentina; Schmidt, Tiziana Julia Nadjeschda; Folino, Pietro; Storti, Barbara; Bizzarri, Ranieri; Raffa, Vittoria

Transcriptomic profiling of unmethylated full mutation carriers implicates TET3 in FMR1 CGG repeat expansion methylation dynamics in fragile X syndrome

Farmiloe, Grace; Bejczy, Veronika; Tabolacci, Elisabetta; Willemsen, Rob; Jacobs, Frank

Microbial Risk and Health Burden Associated with the Domestic Preparation of Lentils in France and Hungary

Feliciano, Rodney; Membré, Jeanne-marie; Delaunay, Louis

ERGA-BGE genome of Stigmatoteuthis arcturi Robson, 1948: the jewelled squid

Fernández-Álvarez, Fernando Ángel; Bernal-Bajo, Ainhoa; Escudero, Nuria; Conejero, María; Riesgo, Ana; Fernández, Rosa; Monteiro, Rita; Böhne, Astrid; Aguilera, Laura; Gut, Marta; Alioto, Tyler S; Câmara Ferreira, Francisco; Cruz, Fernando; Gómez-Garrido, Jèssica; Haggerty, Leanne; Martin, Fergal; Brown, Tom

Confrontations of the Pathogenic Fungus Colletotrichum graminicola With a Biocontrol Bacterium or a Ubiquitous Fungus Trigger Synthesis of Secondary Metabolites With Lead Structures of Synthetic Fungicides

Fernando Devasahayam, Bennet Rohan; Uthe, Henriette; Poeschl, Yvonne; Deising, Holger B

Two distinct host-specialized fungal species cause white-nose disease in bats

Fischer, Nicola M; Dumville, Imogen; Nabholz, Benoit; Zhelyazkova, Violeta; Stecker, Ruth-Marie; Blomberg, Anna S; Dool, Serena E; Fritze, Marcus; Tilak, Marie-Ka; Bashta, Andriy-Taras; Chenal, Clothilde; Fiston-Lavier, Anna-Sophie; Puechmaille, Sebastien J

Isolamento di batteri appartenenti alla famiglia delle Enterobatteriacee resistenti agli antibiotici in alimenti di origine animale e vegetale: analisi genomica e implicazioni per la sicurezza alimentare

FRACCALVIERI, ROSA

Isolation and Characterization of Colistin-Resistant Enterobacteriaceae from Foods in Two Italian Regions in the South of Italy

Fraccalvieri, Rosa; Bianco, Angelica; Difato, Laura Maria; Capozzi, Loredana; Del Sambro, Laura; Castellana, Stefano; Donatiello, Adelia; Serrecchia, Luigina; Pace, Lorenzo; Farina, Donatella; Galante, Domenico; Caruso, Marta; Tempesta, Maria; Parisi, Antonio

Isolation of ESBL-Producing Enterobacteriaceae in Food of Animal and Plant Origin: Genomic Analysis and Implications for Food Safety

Fraccalvieri, Rosa; Castellana, Stefano; Bianco, Angelica; Difato, Laura Maria; Capozzi, Loredana; Del Sambro, Laura; Donatiello, Adelia; Pugliese, Domenico; Tempesta, Maria; Parisi, Antonio; Caruso, Marta

Plasmid and chromosomal sequences of Pantoea agglomerans isolated from air in Fort Collins, Colorado

Freedman, Ashley; Malmstrom, Kendall; Gruber, Paige; Borlee, Bradley R.; Mehaffy, Carolina

SARS-CoV-2 infection dynamics in a MHCI-mismatched lung transplant recipient

Fuchs, Jonas; Karl, Vivien; Hettich, Ina; Alvarado, Jaime; Eckert, Daniel; Jaki, Lena; Kohl, Ann-Kathrin; Kremser, Anastasia; Maks, Anastasija; Terschluse, Charlott; Agarwal, Prerana; Emmerich, Florian; Fähndrich, Sebastian; Flügler, Annabelle; Hornuss, Daniel; Kalbhenn, Johannes; Kneidinger, Nikolaus; Lau, Inga; Lother, Achim; Moneke, Isabelle; Schibilsky, David; Schygulla, Elisabeth; Venhoff, Nils; Zissel, Gernot; Czerny, Martin; Huzly, Daniela; Kochs, Georg; Neumann-Haefelin, Christoph; Passlick, Bernward; Stolz, Daiana; Thimme, Robert; Panning, Marcus; Hofmann, Maike; Frye, Björn C

varVAMP: degenerate primer design for tiled full genome sequencing and qPCR

Fuchs, Jonas; Kleine, Johanna; Schemmerer, Mathias; Kreibich, Julian; Maier, Wolfgang; Battur, Namuun; Krannich, Thomas; Sedaghatjoo, Somayyeh; Jaki, Lena; Maks, Anastasija; Boehm, Christina; Wilhelm, Carina; Schulze, Jessica; Mache, Christin; Berger, Elischa; Panajotov, Jessica; Arnold, Lisa; Grüning, Björn; Bauswein, Markus; Böttcher, Sindy; Johne, Reimar; Wenzel, Jürgen; Hölzer, Martin; Panning, Marcus

Epigenomic profiling of immune cell subtypes reveals H3K27ac-marked stress signatures after long-duration spaceflight

Fullstone, Tabea L; Fischer, Lukas F J; Bohmeier, Maria; Frings-Meuthen, Petra; Crucian, Brian E; Rathert, Philipp

Identification of FLYWCH1 as a regulator of platinum-resistance in epithelial ovarian cancer

Fullstone, Tabea L; Rohm, Helene; Kaltofen, Till; Hierlmayer, Sophia; Reichenbach, Juliane; Schweikert, Simon; Knodel, Franziska; Loeffler, Ann-Kathrin; Mayr, Doris; Jeschke, Udo; Mahner, Sven; Kessler, Mirjana; Trillsch, Fabian; Rathert, Philipp

RLB-MALBAC: a rapid, non-transposase method for synthesizing unbiased sequencing libraries from low amount of genomic DNA for Nanopore sequencing

Gadkar, Vijay J.; Goldfarb, David M.; Dhaliwal, Sukh; Gubbay, Jonathan B.; Tilley, Peter A. G.

Aurora B and INCENP co-overexpression severely disrupts mitosis and distinctly modifies the global transcriptional landscape

Galindo-Moreno, María; Muñoz-Barrera, Marta; Marcozzi, Chiara; Bruno, Federica; Maya-Álvarez, Cristina; Cortés-Ledesma, Felipe; Ríos, Rosa María; González-Aguilera, Cristina; Monje-Casas, Fernando

Using DIMet for Differential Analysis of Labeled Metabolomics Data: A Step-by-step Guide Showcasing the Glioblastoma Metabolism

Galvis, Johanna; Guyon, Joris; Daubon, Thomas; Nikolski, Macha

Exploring transposons in macroalgae: LTR elements and neighboring genes in red seaweeds

Garcia-Jimenez, Pilar; Robaina, Rafael R.

Empowering Healthy Lifestyle Behavior Through Personalized Intervention Portfolios Using a Healthy Lifestyle Recommender System to Prevent and Control Obesity in Young Adults: Pilot Study Protocol from the HealthyW8 Project

García, Silvia; Ródenas-Munar, Marina; Bohn, Torsten; Kemperman, Astrid; Rodrigues, Daniela; Evers, Suzan; Lamy, Elsa; Pérez-Jiménez, María; Forberger, Sarah; Onorati, Maria Giovanna; Devecchi, Andrea; De Magistris, Tiziana; Halimi, Jihan; Ivanova, Yoanna; Doychinov, Boyko; Bouzas, Cristina; Tur, Josep A.

Exploring the Perturbation of Biological Processes Caused by Gene Upregulation Using Knock-In Transfection, Transcriptomics, and Bioinformatics Analysis

Garcia, Isabella R.; Larcombe, Lee D.

Fostering and sustaining collaborative innovation: Insights from ELIXIR Europe's life science Communities

Garrard, Clare; Heil, Katharina F; Aspromonte, Maria Cristina; Batut, Bérénice; Chegkazi, Magda; Hancock, John M; Harrison, Elaine; Ishaque, Naveed; Kerry, Giselle; Korpelainen, Eija; Lanfear, Jerry; Martin, Corinne; Schaaf, Sebastian; Scollen, Serena; Tseng, Yun-Yun; Velankar, Sameer; Vizcaíno, Juan Antonio; Waterhouse, Robert M; Willighagen, Egon; Blomberg, Niklas; Maccallum, Peter

The lincRNA Pantr1 is a FOXG1 target gene conferring site-specific chromatin binding of FOXG1

Gather, Fabian; Rauleac, Tudor; Akol, Ipek; Arumugam, Ganeshkumar; Fullio, Camila L; Müller, Teresa; Kleidonas, Dimitrios; Geiss-Friedlander, Ruth; Fischer, Andre; Vlachos, Andreas; Backofen, Rolf; Vogel, Tanja

Glia Cells Are Selectively Sensitive to Nanosized Titanium Dioxide Mineral Forms

Geiszelhardt, Eszter; Tóth, Erika; Bóka, Károly; Bencsik, Norbert; Schlett, Katalin; Tárnok, Krisztián

ERGA-BGE reference genome of Hanak's bat (Pipistrellus hanaki), an IUCN Vulnerable species restricted to forest-like biotopes

Georgakakis, Panagiotis; Karakasi, Danae; Lymberakis, Petros; Papadimitrakis, Manolis; Stratakis, Manos; Bitzilekis, Eleftherios; Poulakakis, Nikolaos; Böhne, Astrid; Monteiro, Rita; Fernández, Rosa; Escudero, Nuria; Genoscope Sequencing Team; Moussy, Alice; Cruaud, Corinne; Labadie, Karine; Demirdjian, Lola; Mangenot, Sophie; Belser, Caroline; Wincker, Patrick; Oliveira, Pedro H.; Aury, Jean-Marc; Haggerty, Leanne; Sinha, Swati; Martin, Fergal; Bortoluzzi, Chiara

sRNA-mediated crosstalk between cell wall stress and galactose metabolism in Staphylococcus aureus

Germain, Maëliss; Robin, Hugo; Le Huyen, Kim Boi; Massier, Sébastien; Nalpas, Nicolas; Hardouin, Julie; Bouloc, Philippe; Rouillon, Astrid; Chabelskaya, Svetlana

Outbreak of NDM-5-Producing Proteus mirabilis During the COVID-19 Pandemic in an Argentine Hospital

Ghiglione, Barbara; Rodriguez, Ana Paula; Haim, María Sol; Friedman, Laura Esther; Lincopan, Nilton; Ochiuzzi, María Eugenia; Di Conza, José Alejandro

Sustainable solution for microplastic removal: Sequential biodegradation and detoxification of polyethylene terephthalate microplastics by two natural microbial consortia

Giyahchi, Minoo; Moghimi, Hamid

Comparative Genomic Analysis and Antimicrobial Resistance Profile of Enterococcus Strains Isolated from Raw Sheep Milk

Glykeria-Myrto, Anagnostou; Theodora, Skarlatoudi; Vasileios, Theodorakis; Loulouda, Bosnea; Marios, Mataragas

Galaxy as a gateway to bioinformatics: Multi-Interface Galaxy Hands-on Training Suite (MIGHTS) for scRNA-seq

Goclowski, Camila L; Jakiela, Julia; Collins, Tyler; Hiltemann, Saskia; Howells, Morgan; Loach, Marisa; Manning, Jonathan; Moreno, Pablo; Ostrovsky, Alex; Rasche, Helena; Tekman, Mehmet; Tyson, Graeme; Videm, Pavankumar; Bacon, Wendi

Multi-locus phylogenetic network analysis of Ampelomyces mycoparasites isolated from diverse powdery mildews in Australia and the generation of two de novo genome assemblies

Goldspink, Lauren; Sotiropoulos, Alexandros G.; Idnurm, Alexander; Ash, Gavin J.; Dearnaley, John D. W.; Boddington, Morwenna; Ahmad, Aftab; Németh, Márk Z.; Pintye, Alexandra; Gorfer, Markus; Shin, Hyeon-Dong; Kovács, Gábor M.; Vaghefi, Niloofar; Kiss, Levente

Unlocking the Potential of Medicago truncatula A17 Cell Suspension Cultures for Bioproduction of Astaxanthin and Canthaxanthin

Gomes, Susana M.; Rebelo, Bárbara A.; Abranches, Rita

PLAMseq enables the proteo-genomic characterization of chromatin-associated proteins and protein interactions in a single workflow

González-Vinceiro, Lourdes; Espejo-Serrano, Carmen; Soler-Oliva, María Eugenia; Soto-Hidalgo, Emily; Mateos-Martín, María Luisa; Rico, Daniel; González-Aguilera, Cristina; González-Prieto, Román

PLAMseq enables the proteo-genomic characterization of chromatin-associated proteins and protein interactions in a single experimental workflow.

González-Vinceiro, Lourdes; Espejo-Serrano, Carmen; Soler-Oliva, María Eugenia; Mateos-Martín, María Luisa; Rico, Daniel; González-Aguilera, Cristina; Prieto, Román González

Direct effects of prolonged TNF-α and IL-6 exposure on neural activity in human iPSC-derived neuron-astrocyte co-cultures

Goshi, Noah; Lam, Doris; Bogguri, Chandrakumar; George, Vivek Kurien; Sebastian, Aimy; Cadena, Jose; Leon, Nicole F.; Hum, Nicholas R.; Weilhammer, Dina R.; Fischer, Nicholas O.; Enright, Heather A.

ERGA-BGE reference genome of Leviellus thorelli, a common orb-weaving spider representing the Zygiellidae family

Gregorič, Matjaz; Bužan, Elena; Böhne, Astrid; Monteiro, Rita; Fernández, Rosa; Escudero, Nuria; Gut, Marta; Aguilera, Laura; Câmara Ferreira, Francisco; Cruz, Fernando; Gómez-Garrido, Jèssica; S. Alioto, Tyler; Bortoluzzi, Chiara

African swine fever viral infections

GREY, Finn; BAILLIE, Kenneth; PANNHORST, Katrin; Fuchs, Walter

Complete genome sequence of Planococcus koreensis isolated from soil in Fort Collins, Colorado

Gruber, Paige; Freedman, Ashley; Malmstrom, Kendall; Borlee, Bradley R.; Mehaffy, Carolina

Targeted DNA ADP-ribosylation triggers templated repair in bacteria and base mutagenesis in eukaryotes

Gupta, Darshana; Patinios, Constantinos; Bassett, Harris V.; Kibe, Anuja; Collins, Scott P.; Kamm, Charlotte; Wang, Yanyan; Zhao, Chengsong; Vollen, Katie; Toussaint, Christophe; Calvin, Irene; Cullot, Grégoire; Aird, Eric J.; Polkoff, Kathryn M.; Nguyen-Vo, Thuan Phu; Migur, Angela; Schut, Friso; Al’Abri, Ibrahim S.; Achmedov, Tatjana; Del Re, Alessandro; Corn, Jacob E.; Saliba, Antoine-Emmanuel; Crook, Nathan; Stepanova, Anna N.; Alonso, Jose M.; Beisel, Chase L.

Immunoinformatic Prediction of HIV-1 Glycoprotein gp120 and Nef Epitopes Conjugated to HBsAg-Binding Protein (SBP) to Induce the Humoral and Cellular Immune Response

Habib, Arslan; Xu, Xinyi; Xie, Jun; Zhu, Naishuo

Neural function of Netrin-1 in precancerous lesions of the pancreas

Haidar, Hiba; Bellon, Anaïs; Sleiman, Karen; Hocine, Mélanie; Rama, Nicolas; Gadot, Nicolas; Carpizo, Darren R.; Mehlen, Patrick; Mann, Fanny

Multi-level expression profiling of cardiac and musculoskeletal Schwann cells in young and old mice

Haider, Severin; Stefanovska, Dragana; Sassu, Eliza; Domisch, Claudia; Hossfeld, Madelon; Iaconianni, Pia; Perez-Feliz, Stefanie; Schneider-Warme, Franziska; Kohl, Peter; Preissl, Sebastian; Hortells, Luis

The zebrafish (Danio rerio) snoRNAome

Hamar, Renáta; Varga, Máté

Chronic, Low-Dose Methamphetamine Reveals Sexual Dimorphism of Memory Performance, Histopathology, and Gene Expression Affected by HIV-1 Tat Protein in a Transgenic Model of NeuroHIV

Harahap-Carrillo, Indira S.; Fok, Dominic; Wong, Frances; Malik, Gabriel; Maung, Ricky; Qiu, Xinru; Ojeda-Juárez, Daniel; Thaney, Victoria E.; Sanchez, Ana B.; Godzik, Adam; Roberts, Amanda J.; Kaul, Marcus

The oncoprotein DEK controls growth-regulated gene expression by enhancing the DNA-binding activity of basic leucine zipper transcription factors

Hashimoto, Takuma; Saito, Shoko; Ohata, Mike; Okuwaki, Mitsuru

Novel tools for genomic modification and heterologous gene expression in the phylum Planctomycetota

Haufschild, Tom; Hammer, Jonathan; Rabold, Nico; Plut, Veronika; Jogler, Christian; Kallscheuer, Nicolai

ERGA-BGE genome of Anisus vorticulus (Troschel, 1834): the Lesser Ramshorn Snail, an endangered freshwater snail protected under the EU's Habitats and Species Directive

Hausdorf, Bernhard; Tapia, Elicio; Monteiro, Rita; Böhne, Astrid; Marcussen, Thomas; Struck, Torsten; Oomen, Rebekah A; Wellcome Sanger Institute Tree of Life Management, Samples and Laboratory team; Wellcome Sanger Institute Scientific Operations: Sequencing Operations; Wellcome Sanger Institute Tree of Life Core Informatics team; Haggerty, Leanne; Martin, Fergal; Brown, Thomas

Depletion of P2X4 receptor alleviates prostate cancer bone metastasis through reduced cancer cell invasiveness and enhanced cell adhesion activities

He, Jiepei; Zhou, Yuhan; Carrera, Hector M. Arredondo; Li, Nan; Gartland, Alison; Wang, Ning

Navigating the Mass Spectrometry-Based Proteomic Data Using Free Computational Tools

He, Shijie; Zhang, Fangfei

Evidence for a CO2-concentrating mechanism in the model streptophyte green alga Chara braunii

Heise, Carolin M.; Heß, Daniel A.; Walke, Peter; Voß, Maren; Schubert, Hendrik; Hess, Wolfgang R.; Hagemann, Martin

Revealing the hidden diversity of Chlorella heliozoae-infecting giant viruses

Henriques, Lethícia R.; Botelho, Bruna B. F.; Carlson, Roger M.; Carvalho, João Victor R. P.; Oliveira, Ellen G.; Agarkova, Irina V.; Van Etten, James L.; Dunigan, David D.; Rodrigues, Rodrigo A. L.

De novo transcriptome assembly and analysis during agarwood induction in Gyrinops versteegii Gilg. seedling

Hermawaty, Dina; Setyobudi, Titis; Nugrahapraja, Husna; Turjaman, Maman; Faizal, Ahmad

Comprehensive Genomic and Phenotypic Characterization of <i>Escherichia coli</i> O78:H9 Strain HPVN24 Isolated from Diarrheic Poultry in Vietnam

Hoang, Minh Duc; Lanh, Pham Thi; Hien, Vu Thi; Kao, Cheng-Yen; Quyen, Dong Van

Entamoeba histolytica extracellular vesicles drive pro-inflammatory monocyte signaling

Honecker, Barbara; Bärreiter, Valentin A.; Höhn, Katharina; Horváth, Balázs; Harant, Karel; Metwally, Nahla Galal; Marggraff, Claudia; Anders, Juliett; Leyk, Stephanie; Martínez-Tauler, Maria del Pilar; Bea, Annika; Hansen, Charlotte; Fehling, Helena; Lütkemeyer, Melanie; Lorenzen, Stephan; Franzenburg, Sören; Lotter, Hanna; Bruchhaus, Iris

Rising threat of metallo-β-lactamase-producing Klebsiella oxytoca complex in Taiwan, 2013-2022

Huang, Yu-Tsung; Bregente, Carl Jay Ballena; Yu Hsu, Wei-; Liao, Chun-Hsing; Kuo, Yao-Wen; Lee, Jia-Arng; Lee, Tai-fen; Kao, Cheng-Yen; Hsueh, Po-Ren

The complete mitogenome dataset of Hasora Schoenherr (Latreille, 1824) (Lepidoptera: Hesperiidae: Coeliadinae) from Malaysia

Hui, Lam Boon; Miga, Marylin; Siang, Chan Vei; Rahman, Aqilah Awg Abdul; Parimannan, Sivachandran; Rajandas, Heera; Sitam, Frankie Thomas; Tokiman, Lili; Kemalok, Jai; Shamsir, Mohd Shahir; Salleh, Faezah Mohd

DynaTag for efficient mapping of transcription factors in low-input samples and at single-cell resolution

Hunold, Pascal; Pizzolato, Giulia; Heramvand, Nadia; Kaiser, Laura; Barbiera, Giulia; Ray, Olivia; Thomas, Roman; George, Julie; Peifer, Martin; Hänsel-Hertsch, Robert

A One Health approach for the genomic characterization of antibiotic-resistant Campylobacter isolates using Nanopore whole-genome sequencing

Hurtado, Ana; Ocejo, Medelin; Oporto, Beatriz; Lavín, José Luis; Rodríguez, Ruth; Marcos, María Ángeles; Urrutikoetxea-Gutiérrez, Mikel; Alkorta, Miriam; Marimón, José María

First Microbial Survey of a Submerged Petrified Forest in the Black Sea: Culture-Based and Metagenomic Insights

Iliev, Mihail; Ilieva, Ralitsa; Peykov, Slavil; Terziyska, Viktoria; Pelkin, Anton; Kenderov, Lyubomir

Mitochondrial Genomes of Three Melampus Species (Ellobiidae; Gastropoda)

Inäbnit, Thomas; Tiedemann, Ralph; Dennis, Alice B.

Discovering promising drug candidates for Parkinson’s disease: integrating miRNA and DEG analysis with molecular dynamics and MMPBSA

Ishtiaq, Bisma; Paracha, Rehan Zafar; Nisar, Maryum; Ejaz, Saima; Hussain, Zamir

Substrate recognition in Bacillus anthracis sortase B beyond its canonical pentapeptide binding motif and use in sortase-mediated ligation

Jackson, Sophie N; Lee, Darren E; Blount, Jadon M; Croney, Kayla A; Ibershof, Justin W; Ceravolo, Caroline M; Brown, Kate M; Goodwin-Rice, Noah J; Whitham, Kyle M; McCarty, James; Antos, John M; Amacher, Jeanine F

Strain-specific variation in the complement resistome of Pseudomonas aeruginosa

Janet-Maitre, Manon; Robert-Genthon, Mylène; Cretin, François; Elsen, Sylvie; Attrée, Ina

Linker histone variant H1-0 dysregulation in ETV6::RUNX1+ preleukemia and B cell acute lymphoblastic leukemia

Jepsen, Vera Helena

Unusual Genetic Diversity Within Thereuopoda clunifera (Wood, 1862) (Chilopoda: Scutigeromorpha) Revealed by Phylogeny and Divergence Times Using Mitochondrial Genomes

Ji, Jie-Hong; Wu, Hui-Yuan; Gao, Yi-Xin; Shen, Chen-Yang; Yang, Zi-Wen; Storey, Kenneth B.; Yu, Dan-Na; Zhang, Jia-Yong

Enhanced biocompatibility of 3D printed resin parts via wet autoclave postprocessing: implications for stem cell organ-on-a-chip culture

Jönsson, Alexander; Iatrou, Antonia; Wildfang, Louise; J. Neumann, Dana; Gürbüz, Hakan; A. Schoenmaker, Carina A.; Danner Dalgaard, Marlene; Rose Jensen, Pernille; Dufva, Martin

Insights into urinary catheter colonisation and polymicrobial biofilms of Candida- bacteria under flow condition

Joshi, Purvi; Bhattacharjee, Rohit; Sahu, Muskan; Gajjar, Devarshi

Theoretical studies on safety and efficacy of 16 small-molecule MC4R antagonists as therapeutics for obesity

Joshi, Sravani; Srivastava, Ruby

The genetics of extrinsic postzygotic selection in a migratory divide between subspecies of the Swainson’s thrush

Justen, Hannah C.; Blain, Stephanie A.; Delmore, Kira E.

Genome characterization, pathogenicity, and evaluation of therapeutics of Klebsiella aerogenes in Bombyx larvae infection model

Kabir, Tansha; Hossain, Md. Ismail; Jepu, Tangerul A.; Sarker, Mrinmoy; Saleh, Nusrat U. A.; Monir, Hafsa; Nawaar, Nafisa; Jene, Sadia A.; Hossain, Md Mahtab; Uddin, M. Aftab; Bari, M. Latiful; Hossain, Muktadir S.

Genome-wide high-density CRISPR interference screens reveal condition-specific metabolic vulnerabilities in Pseudomonas aeruginosa PAO1

Kaczmarczyk, Andreas; Klotz, Alexander; Manfredi, Pablo; Jenal, Urs

Molecular epidemiology of Neisseria gonorrhoeae isolates in Russia, 2015–2023: current trends and forecasting

Kandinov, Ilya; Shaskolskiy, Boris; Kravtsov, Dmitry; Larkin, Anatoliy; Kubanov, Alexei; Shpilevaya, Marina; Shagabieva, Julia; Nosov, Nikita; Gryadunov, Dmitry

Human papillomavirus seminal carriage alters virome diversity and male fertility: a case-control study

Kansou, Elissa; Aubry, Aurélien; Brochot, Etienne; Priam, Armin; Cabry-Goubet, Rosalie; Bosquet, Dorian; Demey, Baptiste

The Influence of Maternal S. aureus anti-Hla neutralizing antibody on infant skin and soft tissue (SSTI) development in the first year of life

Kao, Carol M; Wylie, Kristine M; Boyle, Mary G; Schneider, Alaina; Uhlir, Rachel; Crick, Scott L; Bubeck Wardenburg, Juliane; Fritz, Stephanie A

In silico drug repurposing for potential HPV-induced skin wart treatment − A comparative transcriptome analysis

Kashani, Navid; Sabbaghian, Amir; Ahmadi, Khadijeh; Aalikhani, Mahdi

Nucleotide-level characterization and improvement of l-arabinose- and l-rhamnose-inducible systems in E. coli using a high-throughput approach

Kim, Nancy M; Peng, Danqia; Sandoval, Nicholas R

Comparative mitochondrial and phylomitogenomic analyses support the existence of a cryptic species complex in Gonodactylaceus falcatus (Stomatopoda: Gonodactyloidea)

Kiser, Helen; Hwang, Hee-seung; Jung, Jongwoo; Baeza, J. Antonio

Silybin A from Silybum marianum reprograms lipid metabolism to induce a cell fate-dependent class switch from triglycerides to phospholipids

Koeberle, Solveigh C; Thürmer, Maria; Su, Fengting; Werner, Markus; Grander, Julia; Hofer, Laura; Gollowitzer, André; Xuan, Loc Le; Benscheid, Felix J; Bonyadi Rad, Ehsan; Zarrelli, Armando; Di Fabio, Giovanni; Werz, Oliver; Romanucci, Valeria; Lupp, Amelie; Koeberle, Andreas

Rapid formulation of a genetically diverse phage cocktail targeting uropathogenic Escherichia coli infections using the UTI89 model

Kongsomboonchoke, Pattida; Mongkolkarvin, Panupon; Khunti, Patiphan; Vijitphichiankul, Jarukit; Nonejuie, Poochit; Thiennimitr, Parameth; Chaikeeratisak, Vorrapon

Encouraging reusability of computational research through Data-to-Knowledge Packages - A hydrological use case

Konkol, Markus; Labuce, Astra; Domisch, Sami; Buurman, Merret; Bremerich, Vanessa

Encouraging reusability of computational research through Data-to-Knowledge Packages - A hydrological use case

Konkol, Markus; Labuce, Astra; Domisch, Sami; Buurman, Merret; Bremerich, Vanessa

Coupling tRNAGly gene redundancy with staphylococcal cell wall integrity, antibiotic susceptibility, and virulence potential

Kouvela, Adamantia; Jaramillo Ponce, Jose R; Giarimoglou, Nikoleta; Chicher, Johana; Marzi, Stefano; Stathopoulos, Constantinos; Stamatopoulou, Vassiliki

Sensitization of Non-M3 Acute Myeloid Leukemia Blasts to All-Trans Retinoic Acid by the LSD1 Inhibitor Tranylcypromine: TRANSATRA Phase I Study

Kruszewski, Michael; Schmoor, Claudia; Berg, Tobias; Rehman, Usama-Ur; Schittenhelm, Marcus; Götze, Katharina; Kündgen, Andrea; Pabst, Caroline; Ma, Tobias; Frey, Anna; Stomper, Julia; Pfeifer, Dietmar; Metzger, Eric; Jung, Johannes; Moschallski, Kevin; Thomas, Johanna; Bug, Gesine; Duyster, Justus; Jung, Manfred; Schüle, Roland; Wäsch, Ralph; Grishina, Olga; Lübbert, Michael

Rapid whole genome sequencing for AMR surveillance in low- and middle-income countries: Oxford Nanopore Technology reveals multidrug-resistant Enterobacter cloacae complex from dairy farms in Sri Lanka

Kumari, Lakmini S.; Siriwardhana, Dinushika M.; Liyanapathirana, Veranja; Jinadasa, Rasika; Wijesinghe, Priyanga

Avirulence depletion assay: Combining R gene-mediated selection with bulk sequencing for rapid avirulence gene identification in wheat powdery mildew

Kunz, Lukas; Jigisha, Jigisha; Menardo, Fabrizio; Sotiropoulos, Alexandros G.; Zbinden, Helen; Zou, Shenghao; Tang, Dingzhong; Hückelhoven, Ralph; Keller, Beat; Müller, Marion C.

Engineering Gypsophila elegans hairy root cultures to produce endosomal escape-enhancing saponins

Lacchini, Elia; Qu, Tongtong; Moses, Tessa; Volkov, Alexander N.; Goossens, Alain

The effect of thermal stress on the X-organ/sinus gland proteome of the estuarine blue crab Callinectes sapidus during the intermolt and premolt stages

Lacerda, José Thalles; David, Daniela Dantas; Castrucci, Ana Maria L.

Discovery of a human parvovirus B19 analog (Erythroparvovirus) in cats

Lanave, Gianvito; Pellegrini, Francesco; Diakoudi, Georgia; Catella, Cristiana; Cavalli, Alessandra; Capozza, Paolo; Elia, Gabriella; Di Martino, Barbara; Zini, Eric; Pollicino, Giuseppe; Zatelli, Andrea; Bányai, Krisztián; Lavazza, Antonio; Decaro, Nicola; Camero, Michele; Martella, Vito

Characterization of Ribosome inactivating protein genes and their transcripts in Trialeurodes vaporariorum

Lapadula, Walter J.; Cañadas, María Guadalupe; Ayub, Maximiliano Juri

Surveillance of Escherichia coli From Frozen Chicken Meat in Fiji: Resistance Characteristics and Public Health Concerns

Lata, Deepika Darshani; Sabala, Rana Fahmi; Fukuda, Akira; Nakajima, Chie; Suzuki, Yasuhiko; Usui, Masaru

lncRNA LINC-PINT controls lymphatic function and inflammatory profile in lymphedema

Laugero, Nathalie; Peghaire, Claire; Verdu, Léna; Balzan, Elisa; Draia-Nicolau, Tangra; Sylvestre, Roxane; Malloizel-Delaunay, Julie; Bura-Rivière, Alessandra; Morfoisse, Florent; Prats, Anne-Catherine; Lacazette, Eric; Garmy-Susini, Barbara

Little influence of DNA quality on the direct sequencing output of non-human primates’ faecal samples

Lee, Florence C. H.; Sitam, Frankie T.; Tan, Lu Ping

Zymogen granule protein 16B (ZG16B) is a druggable epigenetic target to modulate the mammary extracellular matrix

Lengyel, Máté; Molnár, Ádám; Nagy, Tamás; Jdeed, Sham; Garai, Ildikó; Horváth, Zsolt; Uray, Iván P.

Hangover regulates gene expression by limiting NSL-mediated H4K16 acetylation

Lenz, Jonathan; Schmelzer, Laura; Forné, Ignasi; Nist, Andrea; Imhof, Axel; Stiewe, Thorsten; Brehm, Alexander

Hangover regulates gene expression by limiting NSL-mediated H4K16 acetylation

Lenz, Jonathan; Schmelzer, Laura; Forné, Ignasi; Nist, Andrea; Imhof, Axel; Stiewe, Thorsten; Brehm, Alexander

Modulation of carbon-to-nitrogen ratio shapes the microbial ecology in a methanol-fed recirculating marine denitrifying reactor

Lestin, Livie; Villemur, Richard

Genome-wide CRISPRi screen and proteomic profiling identify key genes related to ferulic acid’s antifungal activity

Levi, Ofri; Zuchman, Rina; Sleman, Nour; Koren, Roni; Khamaisi, Hazem; Horwitz, Benjamin A.

Identification of a sex-determining region potentially involved in resolving genetic conflicts over sex ratio

Lhéraud, Baptiste; Dussert, Yann; Chebbi, Mohamed Amine; Giraud, Isabelle; Cordaux, Richard; Peccoud, Jean

Functional characterization of Camptotheca acuminata 7-deoxyloganetic acid synthases and 7-deoxyloganetic acid glucosyltransferases involved in camptothecin biosynthesis

Li, Yi; Wang, Xuefei; Jiang, Honglan; Xu, Shuangyu; Xu, Ying; Liu, Zhan; Luo, Yinggang

A New Species of <i>Macellicephaloides</i> Uschakov, 1955 (Annelida, Polynoidae) from Cold Seeps in the South China Sea: Insights into the Taxonomy and Phylogeny of <i>Macellicephaloides</i> and Related Genera

Li, Jie; Zhang, Linlin; Wang, Mingxiao; Wu, Xuwen

STRaM: A genetic framework for improved cell product provenance for research and clinical translations

Li, Binglin; Le, Chi; Lei, Wen; Zhou, Yingqi; Zhang, Ying; Wang, Yanwen; Wang, Yanyan; Li, Xian; Zheng, Weiyan; Sun, Jie; Tu, Yuanbiao; Yang, Wangren; Zhou, Kuncheng; Meena, Stephene S.; Li, Yufei; Zhu, Keying; Zhou, Shuqin; Liu, Liyan; Chen, Hao; Peng, Qing; Qian, Wenbin; Han, Ray P. S.; Guo, Wei

Species Delimitation Methods Facilitate the Identification of Cryptic Species Within the Broadly Distributed Species in Homoeocerus (Tliponius) (Insecta: Hemiptera: Coreidae)

Liang, Jingyu; Wang, Shujing; Zhang, Jingyao; Chen, Juhong; Fu, Siying; Ye, Zhen; Xue, Huai-Jun; Li, Yanfei; Bu, Wenjun

In-depth analysis of the first complete mitochondrial genome of the rare shrimp Alpheus euphrosyne, with comparative phylogenetic genomics insights into the Alpheus species

Liao, Jian; Li, Jia-Yu; Li, Yi-Yang; Zhang, Shui-Yuan; Yang, Yuan-Feng; Guo, Yu-Song; Wang, Zhong-Duo

Integrative morphological, mitogenomic and phylogenetic analyses reveal new vent-dwelling scallop species

Lin, Yi-Tao; Peng, Ying-Bei; Chen, Chong; Xu, Ting; Qiu, Jian-Wen

The complete mitochondrial genome of Crocidura rapax Allen, 1923 and its phylogenetic analyses

Liu, Zhu; Miao; Guo; Han, Mei-Feng

Galaxy single-cell & spatial omics community update: Navigating new frontiers in 2025

Loach, Marisa; Nilchi, Amirhossein Naghsh; Chiang, Diana; Howells, Morgan; Heyl, Florian; Rasche, Helena; Jakiela, Julia; Tekman, Mehmet; Gamal, Menna; Moreno, Pablo; Hiltemann, Saskia; Schlegel, Timon; Grüning, Björn; Backofen, Rolf; Videm, Pavankumar; Bacon, Wendi

ERGA-BGE reference genome of the Azores Bullfinch - Pyrrhula murina Godman, 1866: an IUCN Vulnerable Species endemic to a single island in the Azores Archipelago (Portugal)

Lopes, Ricardo Jorge; Böhne, Astrid; Marcussen, Thomas; Oomen, Rebekah A.; Struck, Torsten Hugo; Aguilera, Laura; Gut, Marta; Câmara Ferreira, Francisco; Cruz, Fernando; Gómez-Garrido, Jèssica; Alioto, Tyler S.; Monteiro, Rita

Cytogenetic and Molecular Characterization of Sphaerophoria rueppellii (Diptera, Syrphidae)

Lorite, Pedro; Rico-Porras, José M; Palomeque, Teresa; Marcos-García, Mª Ángeles; Mello, Diogo C; Mora, Pablo

Comparative Mitochondrial Genomic and Phylogenetic Study of Eight Species of the Family Lonchodidae (Phasmatodea: Euphasmatodea)

Luo, Ting; Zhang, Qianwen; Pang, Siyu; Qin, Yanting; Zhang, Bin; Bian, Xun

First report of mitochondrial genome of Cloeon viridulum (Ephemeroptera: Baetidae) from Hebei, China

Lv, Mengyu; Zhu, Tianzhe

Comparative genomics reveals specialization and divergent virulence potential in <i>Vibrio vulnificus</i>, <i>Vibrio navarrensis</i>, and <i>Vibrio cidicii</i>

Lydon, Keri Ann; Lott, Megan E J

Exploring the Genetic Networks of HLB Tolerance in Citrus: Insights Across Species and Tissues

Machado, Rodrigo; Moschen, Sebastián; Conti, Gabriela; González, Sergio A; Rivarola, Máximo; Gómez, Claudio; Hopp, Horacio Esteban; Fernández, Paula

Bioinformatics Tools: Insights from Structural Approaches

Mahanandia, Nimai Charan; Biswal, Satyaranjan; Nayak, Chirasmita; Farooqi, Mohammad Samir; Srivastava, Sudhir; Mishra, Dwijesh Chandra; Chaturvedi, Krishna Kumar; Sharma, Anu

Complete genome sequence of <i>Pseudomonas aeruginosa</i> bacteriophage PaFZ4 isolated from Dhaka, Bangladesh

Mahtab, Zuhayr; Tamanna, Fahmida Haque; Jabeen, Ishrat; Islam, Sohidul; Rahman, Sezanur; Rahman, Mustafizur; Shuvo, Sabbir R

Inhibition of Escherichia coli O157:H7 Growth Through Nutrient Competition by Non-O157 E. coli Isolated from Cattle

Maki, Joel J.; Mou, Kathy T.; Trachsel, Julian; Loving, Crystal L.

Comparative mitogenomics analysis of Peltigera species and new insights into the lichen phylogenetics

Mamut, Reyim; Yisilam, Gulbar; Adil, Guldiyar; Anwar, Gulmira

Dataset of benthic foraminiferal community structure from sediment eDNA of Sundarbans mangrove ecosystem

Mandal, Arkaprava; Ghosh, Anwesha; Kumar, Gauraw; Bhadury, Punyasloke

Coxsackievirus A24: A Causative Agent of Acute Haemorrhagic Conjunctivitis Outbreak in Dar es Salaam, Tanzania, between January and February 2024

Mapunda, Lawrence A.; Heusden, Peter van; Baluhya, Robert; Machange, Olympia G.; Mwafulango, Ambele; Francis, Monica Fredrick; Ituka, Aziz; Machange, Omega; Kisanga, Adela; Mgimba, Edna E.; Matimba, Hamza H.; Kado, Dennis M.; Kimaro, Elson E.; Libenanga, Ramadhani A.; Mushumbusi, Jackson Peter; Swalehe, Hamisi M.; Mauki, Ibrahim; Hellar, James; Henerico, Shimba; Kelly, Maria E.; Moremi, Nyambura

Babaco Mosaic Virus (BabMV) Induces Genome-Wide Transcriptomic Reprogramming in Carica papaya

Maridueña-Zavala, Maria Gabriela; AbdElgawad, Hamada; Okla, Mohammad K.; Cevallos, Juan Manuel; Beemster, Gerrit T. S.; Noceda, Carlos

Two Outbreaks of Invasive Pneumococcal Disease in Nursing Homes in Gipuzkoa, Northern Spain

Marimón, José María; Manzanal, Ayla; Mokoroa, Olatz; Alvarez, Lorea; Rekalde, Maite; Vicente, Diego

The early injected genomic region determines sensitivity to Type I restriction-modification defence against Autographiviridae phages

Martinez-Cazorla, Andrea; Martinez-Jimenez, Christian; Elio-Lucas, Patricia; Fineran, Peter C; Jackson, Simon; Sanchez-Amat, Antonio

Virome Survey of Banana Plantations and Surrounding Plants in Malawi

Masangwa, Johnny Isaac Gregorio; Temple, Coline; Rollin, Johan; Maclot, François; Önder, Serkan; Kamwendo, Jamestone; Mwafongo, Elizabeth; Moses, Philemon; Fandika, Isaac; Massart, Sebastien

Prevalence and spectrum of germline BRCA1 and BRCA2 mutations in multiethnic cohort of breast cancer patients in Brunei Darussalam

Matusin, Siti Nur Idayu; Mumin, Nuramalina; Zainal Abidin, Hazirah; Mohd Jaya, Fatin Nurizzati; Lu, Zen Huat; Haji Abdul Hamid, Mas Rina Wati

Genomic Insights of Emerging Multidrug-Resistant OXA-48-Producing ST135 Proteus mirabilis

Mavroidi, Angeliki; Froukala, Elisavet; Spanakis, Nick; Michelaki, Aikaterini; Orfanidou, Maria; Koumaki, Vasiliki; Tsakris, Athanasios

Gene expression changes in pancreatic α-cell lines following knock-out Of either CK2α or CK2α'

Mayer, Jens; Pack, Mandy; Montenarh, Mathias; Götz, Claudia

Rapid promoter evolution of male accessory gland genes is accompanied by divergent expression in closely related Drosophila species

McQuarrie, David W J; Stephens, Frannie H S; Ferguson, Alexander D; Arnold, Roland; Civetta, Alberto; Soller, Matthias

Wastewater as a dual indicator of human and environmental exposure to synthetic antioxidants: Occurrence and fate in biological and advanced wastewater treatment

Meyer, Corina; Bär, Mara L.; Hollender, Juliane

Diversity of mobile genetic elements in carbapenem-resistant Enterobacterales isolated from the intensive care units of a tertiary care hospital in Northeast India

Mitra, Shravani; Naha, Sharmi; Chakraborty, Joy; De, Subhadeep; Kaur, Harpreet; Majumdar, Tapan; Basu, Sulagna

Recombinant Extracellular Factor Protein of <i>Streptococcus suis</i> as Potential Candidate Protein for Antibodies Against <i>S. suis</i> Detection and Subunit Vaccine Development: <i>In Silico</i> and <i>In Vitro</i> Approaches

Mitsuwan, Watcharapong; Saengsawang, Phirabhat; Boripun, Ratchadaporn; Rodríguez-Ortega, Manuel J; Nwabor, Ozioma F

Molecular docking study of aptamer-based biosensor for detection of Shiga Toxin (Stx) protein from Escherichia coli O157:H7

Mohamad Azmi, Muhammad Fakhrullah; Wan Ayub, Wan Mardhiyana; Ibrahim, Izzah Afifah; Redzuan, Muhammad Fadzlisyam; Ismadi, Irfan Danial; Mohd Ghazali, Mohd Ifwat; Mohamad Jamali, Muhamad Arif; Azmi, Liyana; Zainal, Nur Zaireena; Abdul Hamid, Nazefah; Abdullah, Shahino Mah

Computer-aided drug repurposing & discovery for Hepatitis B capsid protein

Mohebbi, Alireza; Nabavi, Seyed Pooria Tadayon; Naderi, Malihe; Sharifian, Kimia; Behnezhad, Farzane; Mohebbi, Maryam; Gholami, Amytis; Askari, Fatemeh Sana; Mirarab, Azam; Monavari, Seyed Hamidreza

Rotifers in space: transcriptomic response of the bdelloid rotifer Adineta vaga aboard the International Space Station

Moris, Victoria C; Bruneau, Lucie; Berthe, Jérémy; Coos, Richard; Baselet, Bjorn; Heuskin, Anne-Catherine; Caplin, Nicol; Demets, René; Krause, Jutta; Zuijderduijn, Lobke; Tortora, Alexandra; Herova, Magdalena; Penninckx, Sébastien; Parmitano, Luca; Tabury, Kevin; Baatout, Sarah; Van Doninck, Karine; Hespeels, Boris

Characterization of the mitochondrial genomes for Ophiostomaips and related taxa from various geographic origins and related species: large intron-rich genomes and complex intron arrangements

Mukhopadhyay, Jigeesha; Wai, Alvan; Lang, B Franz; Hausner, Georg

PathoGFAIR: a collection of FAIR and adaptable (meta)genomics workflows for (foodborne) pathogens detection and tracking

Nasr, Engy; Henger, Anna; Grüning, Björn; Zierep, Paul; Batut, Bérénice

Comprehensive analysis of Slc15a3 and Myo1f gene expression in renal carcinoma: Insights from RNA-seq data and validation via qRT-PCR

Nazari, Mahya; Angaji, Seyed Abdolhamid; Beikzadeh, Behnaz; Narouie, Behzad; Mohammadi, Mahdi

A Lambda-evo (λevo) phage platform for Zika virus EDIII protein display

Negrete-Méndez, Honorio; Valencia-Toxqui, Guadalupe; Martínez-Peñafiel, Eva; Medina-Contreras, Oscar; Fernández-Ramírez, Fernando; Morales-Ríos, Edgar; Navarro-González, Luis Janiel; Torres-Flores, Jesús M.; Kameyama, Luis

Standardizing RNA-seq Analysis of Fungal Pathogens Using BRC-Analytics and Agentic AI: A Candidozyma auris Case Study

Nekrutenko, Anton; Callan, Danielle; Van Den Beek, Marius; Baker, Dannon; Rogers, David; Guerler, Aysam; Chilton, John; Clawson, Hiram; Cain, Scott; O'Meara, Teresa; Beavers, Kelsey; Schatz, Michael; Haeussler, Maximilian; Gruning, Bjorn; Goecks, Jeremy; Pond, Sergei Kosakovsky

Single-vessel transcriptome map pathological landscapes and reveal NR2F2-mediated smooth muscle cell phenotype acquisition in capillary malformations

Nguyen, Vi; Mao, Irving; He, Siwuxie; Castellanos, Isabella; Azuero, Mackenzie; Hochman, Marcelo L.; Rong, Yin; Pernomian, Laena; Chen, Elliott H.; Friedman, Harold I.; Chen, Yan-Hua; Lu, Qun; Fan, Daping; Wenceslau, Camilla F.; Chen, Dong-bao; Nelson, J. Stuart; Jegga, Anil G.; Wang, Yunguan; Tan, Wenbin

Facilitating Reproducibility in Catalysis Research with Managed Workflows and RO-Crates: A Galaxy Case Study

Hidalga, Abraham; Liborio, Leandro; Austin, Patrick; Devadasan, Subindev; Underwood, Tom; Belozerov, Alexander; Wilding, Martin; Ramanan, Nitya; Catlow, C. Richard A.

Dissecting lncRNA-mRNA regulatory network in type 2 diabetes as the risk factor of pancreatic cancer

Nilchi, Amirhossein Naghsh; Dehghanian, Fariba; Vallian, Sadeq; Bahreini, Amin

58. Jahrestagung der Deutschen Gesellschaft für Transfusionsmedizin und Immunhämatologie e.V. (DGTI

Abstracts of the 9th International Conference on Plasmodium vivax Research (ICPvR) 2025

Clostridium tetani bacteraemia in the plague area in France: Two cases

Dataset of benthic foraminiferal community structure from sediment eDNA of Sundarbans mangrove ecosystem

ERGA-BGE reference genome of Hirudo verbana, ... | Open Research Europe

Exome sequencing: a tool for the diagnosis of hereditary retinal dystrophies in Mexican patients

Molecular modelling and experimental validation of mangiferin and its related compounds as quorum sensing modulators of Pseudomonas aeruginosa

Nortje, Nicolas Quinn; Aribisala, Jamiu Olaseni; Pillay, Charlene; Sabiu, Saheed

Shotgun sequencing of airborne eDNA achieves rapid assessment of whole biomes, population genetics and genomic variation

Nousias, Orestis; McCauley, Mark; Stammnitz, Maximilian R; Farrell, Jessica A; Koda, Samantha A; Summers, Victoria; Eastman, Catherine B; Duffy, Fiona G; Duffy, Isabelle J; Whilde, Jenny; Duffy, David J

Comparative analysis of the physiochemical characteristics and bacterial communities of healthy and infected root soil of plantain plant

Nwankwo, C. C.; Arimaha, C. O.; Ezeonuegbu, B. A.

Targeting invasion-associated proteins PfSUB2 and PfTRAMP in Plasmodium falciparum: identification of potential inhibitors via molecular docking

Okafor, Esther. O.; Bella-Omunagbe, Mercy; Elugbadebo, Temitope; Dokunmu, Titilope M.; Adebiyi, Ezekiel

SEOR2 in Arabidopsis mediates Ca2+ dependent defense against phytoplasmas and reduction of plant growth

Omenge, Keziah; Viscardo, Ottone Carmelo; De Oliveira Cantao, Fernando Rodrigo; Santi, Simonetta; Bel, Aart Jan Eeuwe; Musetti, Rita

Chaetomium, Chlonostachys, and Pseudogymnoascus isolates from tomato tissues significantly suppress Phytophthora infestans in tomato

Orwa, Philemon; Kuhl-Nagel, Theresa; Meinhold-Ernst, Rosa; Seyer, Arne; Jehle, Johannes A; Mwirichia, Romano; Linkies, Ada

The Mitochondrial Genome of the Imperiled Goliath Grouper Epinephelus itajara: Selective Pressures in Protein Coding Genes, Secondary Structure of tRNA Genes, and Phylogenetic Placement

Padgett, Kyla; Baeza, J Antonio

The l,d-transpeptidation pathway is inhibited by antibiotics of the β-lactam class in Clostridioides difficile

Paiva, Ana M. Oliveira; Courtin, Pascal; Charpentier, Glenn; Oueled-Chama, Imane; Soutourina, Olga; Chapot-Chartier, Marie-Pierre; Peltier, Johann

Comparison of Functional and Proliferative Activity of hTERT-NK and iCasp9-NK Cells

Palamarchuk, A. I.; Ustiuzhanina, M. O.; Kovalenko, E. I.; Streltsova, M. A.

The Quorum Sensing Regulated sRNA Lrs1 Is Involved in the Adaptation to Low Iron in Pseudomonas aeruginosa

Panagiotopoulou, Dimitra; Catalán, Natalia Romo; Wilcox, Max; Halliday, Nigel; Pantalone, Paolo; Lazenby, James; Cámara, Miguel; Heeb, Stephan

FXR adapts hepatic mitochondrial function to increased substrate oxidation in patients with obesity

Panzitt, Katrin; Jungwirth, Emilian; Vosko, Lena E.; Madreiter-Sokolowski, Corina T.; Madl, Tobias; Tawfik, Ines; Habisch, Hansjörg; Krstic, Jelena; Prokesch, Andreas; Karitnig, Robert; Sucher, Robert; Erdogan, Ceyhun Y.; Vallim, Thomas A.; Trauner, Michael; Fickert, Peter; Al-Dury, Samer; Molinaro, Antonio; Moore, David D.; Thallinger, Gerhard G.; Marschall, Hanns-Ulrich; Wagner, Martin

Integrative analysis of circulating tumor cells (CTCs) and exosomes from small-cell lung cancer (SCLC) patients: a comprehensive approach

Papakonstantinou, Dimitrios; Roumeliotou, Argyro; Pantazaka, Evangelia; Shaukat, Athanasios-Nasir; Christopoulou, Athina; Koutras, Angelos; Dimitrakopoulos, Foteinos-Ioannis; Georgoulias, Vassilis; Xagara, Anastasia; Chantzara, Evangelia; Koinis, Fillipos; Kotsakis, Athanasios; Stathopoulos, Constantinos; Kallergi, Galatea

Large-scale comparative analysis of blowfly mitogenomes, with an emphasis on Calliphorinae (Diptera: Calliphoridae), provides evolutionary insights into mitochondrial DNA structure, gene rearrangements, and inter- and intra-subfamilial relationships among blowflies

Parmar, Drashti R.; Johnston, Nikolas P.; Szpila, Krzysztof

Investigating the molecular mechanisms involved in the developmental assembly of the mushroom body calyx in Drosophila melanogaster

Patil, Komal B.

DNA aptamer AptERA 2 targets ERA from Staphylococcus aureus and limits GTP hydrolysis

Peñaranda, Katherin; Pereira, Nicolle; Savva, Orestis; Petrelli, Dezemona; Spurio, Roberto; Corrigan, Rebecca M.; Milon, Pohl

Investigating proteogenomic divergence in patient-derived xenograft models of ovarian cancer

Perez, Jesenia M.; Duda, Jolene M.; Ryu, Joohyun; Shetty, Mihir; Mehta, Subina; Jagtap, Pratik D.; Nelson, Andrew C.; Winterhoff, Boris; Griffin, Timothy J.; Starr, Timothy K.; Thomas, Stefani N.

Enhanced sensitivity of TAPscan v4 enables comprehensive analysis of streptophyte transcription factor evolution

Petroll, Romy; Varshney, Deepti; Hiltemann, Saskia; Finke, Hermann; Schreiber, Mona; Vries, Jan; Rensing, Stefan A.

Prevalence and Antimicrobial Resistance of Methicillin-Resistant and Methicillin-Susceptible Staphylococcus in Small- to Medium-Scale and Large-Scale Dairy Farms in Thailand

Phumthanakorn, Nathita; Thanasak, Jitkamol

The Role of Rhodococcus Opacus R7 Laccase-Like Multicopper Oxidase (Lmco1) Enzyme In Biodegradation of Polyethylene Polymer

Pishan, Mahboobeh; Sazegari, Sima; Niazi, Ali; Majdinasab, Marjan; Zinati, Zahra; Eskandari, Mohammad Hadi

Aquirufa esocilacus sp. nov., Aquirufa originis sp. nov., Aquirufa avitistagni, and Aquirufa echingensis sp. nov. discovered in small freshwater habitats in Austria during a citizen science project

Pitt, Alexandra; Lienbacher, Stefan; Schmidt, Johanna; Neumann-Schaal, Meina; Wolf, Jacqueline; Oren, Aharon; Reichl, Sophia; Hahn, Martin W.

Biodiversity of strains belonging to the freshwater genus Aquirufa in a riparian forest restoration area in Salzburg, Austria, with a focus on the description of Aquirufa salirivi sp. nov. and Aquirufa novilacunae sp. nov

Pitt, Alexandra; Lienbacher, Stefan; Schmidt, Johanna; Neumann-Schaal, Meina; Wolf, Jacqueline; Wenng, Hannah; Oren, Aharon; Huber, Zoe; Hahn, Martin W.

Unlocking the Potential of <i>vB</i>_<i>EfaS</i>_<i>LOK1</i>: A Newly Isolated Bacteriophage Against <i>Enterococcus faecalis</i>

Plata Suarez, Laura Marcela; Del Valle Balbuena, Salvador; Becerra Mejía, Isamar Leticia; Loera Piedra, Alejandra Aidee; Domínguez Espinoza, Cristina; Ángeles González, Arantxa Monserrat; Contreras Rodríguez, Araceli; Aquino Andrade, Alejandra; Martínez Díaz, Sergio Francisco; Aguilera Arreola, Ma Guadalupe

Protocol for genomic surveillance of Plasmodium falciparum antigens using amplicon-based PacBio long-read sequencing

Plaza, David Fernando

Transcriptional and epigenomic changes in response to polyethylene glycol-triggered osmotic stress in Brassica napus L

Prasad, Melvin; Shetty, Prateek; Pal, Avik Kumar; Rigó, Gábor; Kant, Kamal; Zsigmond, Laura; Nagy, István; Shivaprasad, Padubidri V; Szabados, László

Genomic Characterization and Antimicrobial Resistance Profile of <i>Streptococcus uberis</i> Strains Isolated from Cows with Mastitis from Northwestern Spain

Quinto, Emiliano J; Redondo Del Río, Paz; Mateo Silleras, Beatriz; Prieto, Alberto; López-Lorenzo, Gonzalo; Franco, Carlos M; Vázquez, Beatriz I

Diverse toxin repertoire but limited metabolic capacities inferred from the draft genome assemblies of three Spiroplasma (Citri clade) strains associated with Drosophila

Ramirez, Paulino; Martinez Montoya, Humberto; Aramayo, Rodolfo; Mateos, Mariana

Mitochondrial Genomes of Three Species of the Family Camaenidae (Gastropoda: Stylommatophora): Structural Features, Codon Usage Patterns, and Phylogenetic Implications

Ran, Xing-Ming; He, Hai-Yong; Yang, Lin; Long, Jian-Kun; Chang, Zhi-Min; Li, Zhong; Gao, Junyi; Chen, Xiang-Sheng

Targets of the transcription factor Six1 identify previously unreported candidate deafness genes

Ranganathan, Ramya; Sari, Fereshteh; Wang, Scarlet Xiaoyan; Thiery, Alexandre; Buzzi, Ailin Leticia; Guerra, Rosalinda; Moody, Sally A.; Streit, Andrea

Isolation and characterization of fMGyn-Pae01, a phiKZ-like jumbo phage infecting Pseudomonas aeruginosa

Ranta, Kira; Skurnik, Mikael; Kiljunen, Saija

Shotgun metagenomic composition, microbial interactions and functional insights into the uterine microbiome of postpartum dairy cows with clinical and subclinical endometritis

Rashid, Muhammad Hussnain; Pascottini, Osvaldo Bogado; Xie, Lei; Niazi, Mehrnaz; Lietaer, Leen; Comlekcioglu, Ugur; Opsomer, Geert

Bactericidal Activities of Nanoemulsion Containing Piper betle L. Leaf and Hydroxychavicol Against Avian Pathogenic Escherichia coli and Modelling Simulation of Hydroxychavicol Against Bacterial Cell Division Proteins

Ratchasong, Kunchaphorn; Saengsawang, Phirabhat; Yusakul, Gorawit; Makkliang, Fonthip; Lakhanapuram, Hemanth Kumar; Wintachai, Phitchayapak; Thomrongsuwannakij, Thotsapol; Nwabor, Ozioma Forstinus; Punyapornwithaya, Veerasak; Romyasamit, Chonticha; Mitsuwan, Watcharapong

Bactericidal Activities of Nanoemulsion Containing Piper betle L. Leaf and Hydroxychavicol Against Avian Pathogenic Escherichia coli and Modelling Simulation of Hydroxychavicol Against Bacterial Cell Division Proteins

Ratchasong, Kunchaphorn; Saengsawang, Phirabhat; Yusakul, Gorawit; Makkliang, Fonthip; Lakhanapuram, Hemanth Kumar; Wintachai, Phitchayapak; Thomrongsuwannakij, Thotsapol; Nwabor, Ozioma Forstinus; Punyapornwithaya, Veerasak; Romyasamit, Chonticha; Mitsuwan, Watcharapong

Targeting GRPR for sex hormone-dependent cancer after loss of E-cadherin

Raymond, Jérémy H.; Aktary, Zackie; Pouteaux, Marie; Petit, Valérie; Luciani, Flavie; Wehbe, Maria; Gizzi, Patrick; Bourban, Claire; Decaudin, Didier; Nemati, Fariba; Martianov, Igor; Davidson, Irwin; Tomasetto, Catherine-Laure; White, Richard M.; Mahuteau-Betzer, Florence; Vergier, Béatrice; Larue, Lionel; Delmas, Véronique

Thermotolerant class A acid phosphatase active across broad pH range and diverse substrates

Recio, Maria‐Isabel; Gavira, José A.; La Torre, Jesús; Cano‐Muñoz, Mario; Martínez‐Rodriguez, Sergio; Daddaoua, Abdelali; Duque, Estrella; Ramos, Juan L.

Clinical validation of 13-gene DNA methylation analysis in oral brushing samples for detection of oral carcinoma: An Italian multicenter study

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A splice donor in E6 influences keratinocyte immortalization by beta-HPV49

Rehm, Tina M.; Iftner, Thomas; Stubenrauch, Frank

Comprehensive profiling of ribo-seq detected small sequences in yeast reveals robust conservation patterns and their potential mechanisms of origin

Reyes Loaiciga, Cristopher; Li, Weiyi; Zhao, Xin-Qing; Li, Jing

Repeated Low-Level Inflammatory Challenge Leads to Alterations in the TNF-CXCL10 Signalling Pathway in Mouse Cerebral Endothelial Cells In Vitro

Ritson, Megan; Xia, Dong; Wheeler-Jones, Caroline; Stolp, Helen B.

Deciphering a cryptic minefield: A guide to Cryptosporidium gp60 subtyping

Robinson, Guy; Chalmers, Rachel M; Elwin, Kristin; Guy, Rebecca A; Bessonov, Kyrylo; Troell, Karin; Xiao, Lihua

Escherichia coli Sequence Type 131-H22 in Parrots from Illegal Pet Trade, Brazil, 2024

Rocha, Victoria Galdino Pavlenco; Barbosa, Fernanda Borges; Ruiz, Joaquim; Christensen, Henrik; Knöbl, Terezinha

Arp2/3-dependent regulation of ciliogenesis governs adaptive distal tubular epithelial cell states in kidney disease

Rogg, Manuel; Weißer, Lisa; Maier, Jasmin I.; Sigle, August; Helmstädter, Martin; Stigler, Marlene; Sammarco, Alena; Gräwe, Katja; Andreev, Grigor; Kark, Charlotte; Ramakrishnan, Suresh K.; Özel, Cem; Butt, Linus; Arnold, Frederic; Bechtel-Walz, Wibke; Schilling, Oliver; Tanriver, Yakup; Brinkkötter, Paul; Grabbert, Markus; Simons, Matias; Werner, Martin; Kretz, Oliver; Benzing, Thomas; Huber, Tobias B.; Schell, Christoph

Microplastic impacts archaeal abundance, microbial communities, and their network connectivity in a Sub-Saharan soil environment

Rohrbach, Stephan; Gkoutselis, Gerasimos; Hink, Linda; Weig, Alfons R; Rambold, Gerhard; Horn, Marcus A

Galaxy QCxMS for straightforward semi-empirical quantum mechanical EI-MS prediction

Rojas, Wudmir Y; Ahmad, Zargham; Jakiela, Julia; Hecht, Helge; Klánová, Jana; Price, Elliott J

CRISPR-Cas–mediated heritable chromosome fusions in Arabidopsis

Rönspies, Michelle; Khosravi, Solmaz; Helia, Ondřej; Valisi, Alessandro; Fajkus, Jiří; Fojtová, Miloslava; Houben, Andreas; Puchta, Holger

KlebPhaCol: a community-driven resource for Klebsiella research identified a novel phage family

Rothschild-Rodriguez, Daniela; Lambon, Kai S; Kushwaha, Simran Krishnakant; Garushyants, Sofya K; Ertelt, Moritz; Latka, Agnieszka; Costa, Ana Rita; Mantzouratou, Anna; King, Claire; Boeckaerts, Dimitri; Sheridan, Elizabeth; Koonin, Eugene V; Merrick, Francesca; Drobniewski, Francis; De Angelis, Ilaria; Saeed, Kordo; Martin, Macy; Sutton, J Mark; Wand, Matthew E; Andrew, Michael; Hedges, Morgen; Brouns, Stan J J; Haas, Pieter-Jan; Lawson, Sophie T; Fordham, Stephen M E; Lee, Yan-Jiun; Wu, Yi; Briers, Yves; Braun, Peter; Weigele, Peter R; Nobrega, Franklin L

Accelerated maturation of branched organoids confined in collagen droplets

Ruider, Iris; Pastucha, Anna; Raich, Marion K.; Xu, Wentao; Liu, Yan; Reichert, Maximilian; Weitz, David; Bausch, Andreas R.

Thiamine is a vitamin for plant-pathogenic powdery mildew fungi

Sabelleck, Björn; Freh, Matthias; Lammertz, Meltem; Browatzki, Jennifer; Vllaho, Anna-Maria; Piślewska-Bednarek, Mariola; Bednarek, Paweł; Panstruga, Ralph

Complete genome sequences of 34 Arctic marine bacteria

Sadler, Michael C.; Mino, Sayaka; Morris, Robert M.

Genomic diversity and adaptation in Arctic marine bacteria

Sadler, Michael C.; Wietz, Matthias; Mino, Sayaka; Morris, Robert M.

Variations of the Virome in Raw and Treated Water: A One-Year Follow-Up at Six Different Drinking Water Treatment Plants

Saguti, Fredy; Wang, Hao; Churqui, Marianela Patzi; Tunovic, Timur; Holmer, Linda; Pettersson, Ämma; Schleich, Caroline; Pott, Britt-Marie; Bergstedt, Olof; Nyström, Kristina; Norder, Heléne

Comparative genomics of Acinetobacter baumannii from Egyptian healthcare settings reveals high-risk clones and resistance gene mobilization

Salem, Salma; Osama, Dina; Abdelsalam, Nehal Adel; Shata, Ahmed H.; Mouftah, Shaimaa F.; Elhadidy, Mohamed

Genetic variability of Shiga toxin-producing Escherichia coli strains isolated from Paraguayan cattle

Salinas, Claudia; Rodriguez, Fátima; Muñoz-Barrera, Adrián; Lorenzo Salazar, José Miguel; González-Montelongo, Rafaela; Flores, Carlos; Guillén, Rosa

Characterisation of Plasmid-Associated Antimicrobial Resistance Genes in Coastal Marine <i>Enterobacterales</i> from the Central Adriatic Sea: De Novo Assembly and Bioinformatic Profiling

Šamanić, Ivica; Dželalija, Mia; Bellulovich, Ema; Kalinić, Hrvoje; Jozić, Slaven; Ordulj, Marin; Udiković-Kolić, Nikolina; Maravić, Ana

A smart community interactive art therapy platform based on multimodal computer graphics and resilient artificial intelligence for home-based elderly care

Sang, DianDian; Miao, Ling; Wu, Qitao

Wastewater Metavirome Diversity: Exploring Replicate Inconsistencies and Bioinformatic Tool Disparities

Santos, André F. B.; Nunes, Mónica; Filipa-Silva, Andreia; Pimentel, Victor; Pingarilho, Marta; Abrantes, Patrícia; Miranda, Mafalda N. S.; Crespo, Maria Teresa Barreto; Abecasis, Ana B.; Parreira, Ricardo; Seabra, Sofia G.

Zoonotic potential of methicillin-resistant Staphylococcus aureus isolated from pets and their owners in Bangladesh

Sarker, Himangsu; Hassan, Jayedul; Rahman, A K M Anisur; Korber, Darren R; Alam, Md Mahbub

Maternal PRDM10 activates essential genes for oocyte-to-embryo transition

Seah, Michelle K. Y.; Han, Brenda Y.; Huang, Yan; Rasmussen, Louise J. H.; Stäubli, Andrina J.; Bello-Rodríguez, Judith; Chan, Andrew Chi-Ho; Gasnier, Maxime; Wollmann, Heike; Guccione, Ernesto; Messerschmidt, Daniel M.

Genomic dataset of eighteen Burkholderia pseudomallei strains isolated from clinical and environmental settings in Malaysia

Semail, Noreafifah; Zuraina, Nik Mohd Noor Nik; Ismadi, Yasmin Khairani Muhammad; Harun, Azian; Aziah, Ismail; Deris, Zakuan Zainy

Genetic Diversity and Chromosomal Variations in the Iranian <i>Leishmania major</i> Strain: Insights into Pathogenicity and Drug Resistance

Sharifian, Hanieh; Khalafiyan, Anis; Fadaie, Mahmood; Khanahmad, Hossein; Shahmoradi, Zabihollah; Zaker, Erfan; Mousavi, Parisa; Pourmoshir, Nadia; Zolfaghari, Azadeh

The cytokinesis associated proteins CITK and ASPM-1 regulate neuronal microtubule dynamics and polarity in C. elegans

Sharma, Sunanda; Ponniah, Keerthana; Ghosh-Roy, Anindya

Multi-Omic Data Analysis Supporting the Plausibility of Human Aging Sperm–Mediated Epigenetic Inheritance

Sharma, Abhay

Transcriptional signatures associated with waterlogging stress responses and aerenchyma formation in barley root tissue

Sherwood, Orla L; Burke, Rory; O’Rourke, Jennifer; Whelan, Conor V; Downey, Frances; Ryan, Louise; McCabe, Eoin F; Huang, Zixia; Ng, Carl K Y; McCabe, Paul F; Kacprzyk, Joanna

Taxonomic refinement of Bacillus thuringiensis

Shiekh Suliman, Nagham; Talaei-Hassanloui, Reza; Abachi, Hamid; Zarei, Sadegh; Osdaghi, Ebrahim

Inspired by molecular dynamic simulation, exploring chemical constituents of alcoholic extract of Garuga pinnata computationally as inhibitors of GluN2B-containing NMDA receptors

Shinge, Jagannath; Muthal; Walhekar; Bagul; Kumar; V. M.; Macha; Shinde; Palled; Kulkarni, Ravindra

Exploring the genomic diversity and breeding applications of the Solanum sessiliflorum transcriptome via phylogenetic analysis

Silva, Priscila O.; Silva, Lucas Eduardo R.; Gouveia, Débora G.; Rodrigues, Priscila M.; Gonçalves, José Francisco C.; Nunes-Nesi, Adriano; Araújo, Wagner L.; Cavalcanti, João Henrique F.

Persistent epigenetic memory of SARS-CoV-2 mRNA vaccination in monocyte-derived macrophages

Simonis, Alexander; Theobald, Sebastian J; Koch, Anna E; Mummadavarapu, Ram; Mudler, Julie M; Pouikli, Andromachi; Göbel, Ulrike; Acton, Richard; Winter, Sandra; Albus, Alexandra; Holzmann, Dmitriy; Albert, Marie-Christine; Hallek, Michael; Walczak, Henning; Ulas, Thomas; Koch, Manuel; Tessarz, Peter; Hänsel-Hertsch, Robert; Rybniker, Jan

Escherichia coli Strains Originating from Raw Sheep Milk, with Special Reference to Their Genomic Characterization, Such as Virulence Factors (VFs) and Antimicrobial Resistance (AMR) Genes, Using Whole-Genome Sequencing (WGS)

Skarlatoudi, Theodora; Anagnostou, Glykeria-Myrto; Theodorakis, Vasileios; Bosnea, Loulouda; Mataragas, Marios

Whole Genome Sequencing and In Silico Analysis of the Safety and Probiotic Features of Lacticaseibacillus paracasei FMT2 Isolated from Fecal Microbiota Transplantation (FMT) Capsules

Sliti, Amani; Kim, Ryeong-Hui; Lee, Dokyung; Shin, Jae-Ho

Unravelling the complete mitochondrial genomes of Thrips tabaci Lindeman and Thrips parvispinus Karny (Thysanoptera: Thripidae) and their phylogenetic implications

Soumia, P. S.; Shirsat, Dhananjay V.; Karuppaiah, Vadivelu; Divekar, Pratap A.; Mahajan, Vijay

New Insights into the Sex Chromosome Evolution of the Common Barker Frog Species Complex (Anura, Leptodactylidae) Inferred from Its Satellite DNA Content

Souza, Lucas H. B.; Ferro, Juan M.; Milanez, Helena M.; Haddad, Célio F. B.; Lourenço, Luciana B.

New Isolates of Betachloroviruses Shed Light on the Diversity and Biological Complexity of an Unexplored Group of Giant Algal Viruses

Souza, Júlia W.; Henriques, Lethícia R.; Carlson, Roger M.; Botelho, Bruna B. F.; Carvalho, João Victor R. P.; Santos, João Pedro N.; Aguiar, Eric R. G. R.; Agarkova, Irina V.; Van Etten, James L.; Dunigan, David D.; Rodrigues, Rodrigo A. L.

Quaternary Habitat Fluctuations and Demographic Dynamics in Turtles Inferred From Environmental Niche Modelling and Whole Genome Data

Sozzoni, Marcella; Balacco, Jennifer; Bellavita, Massimo; Brüniche-Olsen, Anna; Formenti, Giulio; Jain, Nivesh; Koo, Bonhwang; Mountcastle, Jacquelyn; Palmada-Flores, Marc; Trifonov, Vladimir; Chelazzi, Guido; Fratini, Sara; Jarvis, Erich D.; Natali, Chiara; Nespoli, Davide; Ciofi, Claudio; Iannucci, Alessio

Lysine-specific demethylase 1 regulates hematopoietic stem cell expansion and myeloid cell differentiation

Staehle, Hans Felix; Koellerer, Christoph; Staehle, Anne Marie; Schulze, Jana; Eble, Philipp; Müller, Anja; Zell, Franziska; Müller, Judith M.; Perner, Florian; Attia, Aya; Mallm, Jan-Philipp; Pozdnyakova, Olga; Rippe, Karsten; Brors, Benedikt; Feuerbach, Lars; Imbusch, Charles D.; Metzger, Eric; Schüle, Roland; Pahl, Heike L.; Jutzi, Jonas S.

Stabilizing the Baseline: Reference Gene Evaluation in Three Invasive Reynoutria Species

Stafiniak, Marta; Makowski, Wojciech; Matkowski, Adam; Bielecka, Monika

Fibroblast growth factor signaling induces a chondrocyte-like state of peripheral nerve fibroblast during aging

Stefanovska, Dragana; Sassu, Eliza; Tekman, Mehmet; Naghsh Nilchi, Amirhossein; Haider, Severin; Domisch, Claudia; Hossfeld, Madelon; Perez-Feliz, Stefanie; Miarka, Lauritz; Schneider-Warme, Franziska; Arnold, Sebastian J; Prinz, Marco; Grüning, Björn; Preissl, Sebastian; Hortells, Luis

A revision of the hitherto neglected genus Topiris Walker, 1863 (Lepidoptera, Xyloryctidae) with taxonomic notes on the genus Athrypsiastis Meyrick, 1910

Sterling, Mark J.; Price, Ben W.; Lees, David C.

Mechanisms of Resistance to PARPi in Pancreatic Ductal Adenocarcinoma

Stoof, Jojanneke; Andrieu, Charlotte; O'Connell, Fiona; O'Sullivan, Jacintha; Lowery, Maeve A.; Walsh, Naomi

Sex-lethal is recruited to chromatin to promote neuronal tRNA synthesis in males through RNA Polymerase III regulation

Storer, Freya; McClure, Colin; Gomez, Alicia Estacio; Wong, Tsz Lam; Minkley, Lucy; Southall, Tony

First Detection and Genomic Characterization of Linezolid-Resistant Enterococcus faecalis Clinical Isolates in Bulgaria

Strateva, Tanya V.; Hristova, Preslava; Stoeva, Temenuga J.; Hitkova, Hristina; Peykov, Slavil

BenchAMRking: a Galaxy-based platform for illustrating the major issues associated with current antimicrobial resistance (AMR) gene prediction workflows

Strepis, Nikolaos; Dollee, Dennis; Vrins, Donny; Vanneste, Kevin; Bogaerts, Bert; Carrillo, Catherine; Bharat, Amrita; Horan, Kristy; Sherry, Norelle L.; Seemann, Torsten; Howden, Benjamin P.; Hiltemann, Saskia; Chindelevitch, Leonid; Stubbs, Andrew P.; Hays, John P.

C13-Deacylase from Nocardioides albus Resp. Streptomyces sp., Catalyzing Side Chain Hydrolysis on the Taxane Core

Su, Jinfen; Schell, Eugen; Heine, Thomas; Ansorge-Schumacher, Marion B.

Comparative genome analysis of human pathogen Parvimonas micra revealed strain JM503A as potential novel species in the genus Parvimonas and high intra-species functional diversity

Suresh, Roja; Jayachandiran, Susanthika; Balu, Pratebha; Ranganadin, Pajanivel; Dhamodharan, Ramasamy

Comparative genomics reveals genetic diversity and differential metabolic potentials of the species of Arachnia and suggests reclassification of Arachnia propionica E10012 (=NBRC_14587) as novel species

Suresh, Roja; Jayachandiran, Susanthika; Balu, Pratebha; Ramasamy, Dhamodharan

SETD1A-dependent EME1 transcription drives PARPi sensitivity in HR deficient tumour cells

Sweatman, Ellie; Bayley, Rachel; Selemane, Richad; Higgs, Martin R.

QSAR-Based Drug Repurposing and RNA-Seq Metabolic Networks Highlight Treatment Opportunities for Hepatocellular Carcinoma Through Pyrimidine Starvation

Talubo, Nicholas Dale D.; Dela Cruz, Emery Wayne B.; Fowler, Peter Matthew Paul T.; Tsai, Po-Wei; Tayo, Lemmuel L.

Analysis of meta-transcriptomics and identification of genes linked to bioactive peptides and vitamins in Indonesian tempe

Tamang, Jyoti Prakash; Das, Souvik; Lama, Sonam; Utama, Gemiilang Lara; Safitri, Ratu; Balia, Roostita Lobo; Thapa, Namrata

Denser Mitogenomic Sampling for Exploring the Phylogeny of Tellinoidea (Mollusca: Bivalvia)

Tang, Weikang; Xu, Tao; Gong, Jihang; Kong, Lingfeng

Saturation mutagenesis identifies activating and resistance-inducing FGFR kinase domain mutations

Tangermann, Carla; Ghosh, Avantika; Ziegler, Martin; Facchinetti, Francesco; Stappenbeck, Jannis; Carus Sahin, Yagmur Oyku; Riester, Marisa; Viardot, Luise Carmina; Zundel, Tobias; Friboulet, Luc; Hollebecque, Antoine; Naveja, José J.; Wanninger, Angela; Hess, Maria Elena; Brummer, Tilman; Boerries, Melanie; Loges, Sonja; Loriot, Yohann; Illert, Anna L.; Diederichs, Sven

OXA-carbapenemases and mutations within PBPs in ST2 carbapenem-resistant A. baumannii: evaluating the efficacy of cefiderocol and ampicillin-sulbactam combination therapy

Tascini, C.; Giuliano, S.; Martini, L.; Carannante, N.; Mariano, B.; Perilli, M.; Piccirilli, A.

TGF-β signaling redirects Sox11 gene regulatory activity to promote partial EMT and collective invasion of oncogenically transformed intestinal organoids

Teng, Yu-Hsiang; Appiah, Bismark; Andrieux, Geoffroy; Schrempp, Monika; Rose, Katja; Hofmann, Angelika Susanna; Ku, Manching; Beyes, Sven; Boerries, Melanie; Hecht, Andreas

Non-rhizobial endophyte recruitment and diversity in Pisum sativum are strongly shaped by phosphorus fertilizer form

Thaqi, Stefanie Katharina; Hensel, Natalia; Vitow, Nora; Baum, Christel; Streb, Lisa-Marie; Kublik, Susanne; Leinweber, Peter; Panten, Kerstin; Schloter, Michael; Schulz, Stefanie

From pollution to reforestation: the hidden microbiome of Alnus glutinosa nodules over 30 years

Thompson, Ryan Michael; Carmen Montero-Calasanz, Maria; George, David; Fox, Edward M.

ERGA-BGE genome of Xanthium orientale subsp. italicum (Moretti) Greuter. A plant of American origin, now widespread and, in some cases, invasive in Europe

Tomasello, Salvatore; Manzo, Eleonora; Monteiro, Rita; Böhne, Astrid; Marcussen, Thomas; Struck, Torsten H; Oomen, Rebekah A; Genoscope Sequencing Team; Moussy, Alice; Cruaud, Corinne; Labadie, Karine; Demirdjian, Lola; N’dar, Adama; Wincker, Patrick; Oliveira, Pedro H; Aury, Jean-Marc; Barrera Enriquez, Vianey Paola; Haggerty, Leanne; Martin, Fergal; Brown, Tom

Bacteriophage infection drives loss of β-lactam resistance in methicillin-resistant Staphylococcus aureus

Tran, My; Hernandez Viera, Angel J; Tran, Patricia Q; Nilsen, Erick D; Tran, Lily; Mo, Charlie Y

Expansion of SARS-CoV-2 mutations in patient with B-cell lymphoma and rare combination of ACE2, TLR4, DDX58 and IFIH1 variations: A retrospective analysis of the virus-host interplay

Trifonova, Angelina; Yosifova, Adelina; Syarov, Atanas; Velichkov, Andrey; Pasev, Martin; Takov, Svetlomir; Madarzhieva, Kalina; Angelov, Krassimir; Vazharova, Radoslava; Terzieva, Velislava

Clinical and environmental investigation of six cases of Chryseobacterium arthrosphaerae infections in a Southern Italian hospital

Triggiano, Francesco; Caggiano, Giuseppina; Capozzi, Loredana; Castellana, Stefano; Diella, Giusy; Furio, Alessandro; Cantalice, Michele Alberto; Manicone, Anna Lucia; Savino, Antonella Francesca; Mosca, Adriana; De Carlo, Carmela; Sparapano, Eleonora; Dalfino, Lidia; Saracino, Annalisa; Di Gennaro, Francesco; Principi, Maria Beatrice; Parisi, Antonio; Montagna, Maria Teresa; Tafuri, Silvio; De Giglio, Osvalda

Crossing Wallace’s line: an evolutionarily young gibbon ape leukemia virus like endogenous retrovirus identified from the Philippine flying lemur (Cynocephalus volans)

Tsangaras, Kyriakos; Mayer, Jens; Greenwood, Alex D.

A Deep Metagenomic Snapshot as a Proof-of-Concept for Resource Generation: Simultaneous Assembly of Host, Food, and Microbiome Genomes From Stingless Bee Larval Food

Ueira-Vieira, Carlos; Santos, Ana Carolina Costa; Araújo, Thayane Nogueira; Augusto, Solange Cristina; Avila, Natanael Borges; Bonetti, Ana Maria; Santos, Anderson Rodrigues

Mitogenomics of Psorodonotus ebneri Brunner von Wattenwyl, 1861 (Orthoptera: Tettigoniidae): Selection profile and patterns of intraspecific and interspecific divergence

Uluar, Onur; Yartaş, Mustafa; Yahyaoğlu, Özgül; Çıplak, Battal

Flexynesis: A deep learning toolkit for bulk multi-omics data integration for precision oncology and beyond

Uyar, Bora; Savchyn, Taras; Naghsh Nilchi, Amirhossein; Sarigun, Ahmet; Wurmus, Ricardo; Shaik, Mohammed Maqsood; Grüning, Björn; Franke, Vedran; Akalin, Altuna

PI3Kα inhibition blocks osteochondroprogenitor specification and the hyper-inflammatory response to prevent heterotopic ossification

Valer, José Antonio; Deber, Alexandre; Wits, Marius; Pimenta-Lope, Carolina; Goumans, Marie-José; Rosa, Jose Luis; Sánchez-Duffhues, Gonzalo; Ventura, Francesc

A Virome Scanning of Saffron (Crocus sativus L.) at the National Scale in Iran Using High-Throughput Sequencing Technologies

Valouzi, Hajar; Dizadji, Akbar; Golnaraghi, Alireza; Salami, Seyed Alireza; Fontdevila Pareta, Nuria; Önder, Serkan; Selmi, Ilhem; Rollin, Johan; Berhal, Chadi; Tamisier, Lucie; Maclot, François; Wang, Long; Zhang, Rui; Bahlolzada, Habibullah; Lefeuvre, Pierre; Massart, Sébastien

Transposon insertion causes ctnnb2 transcript instability that results in the maternal effect zebrafish ichabod (ich) mutation

Varga, Zsombor; Kagan, Ferenc; Maegawa, Shingo; Nagy, Ágnes; Okendo, Javan; Burgess, Shawn M.; Weinberg, Eric S.; Varga, Máté

ERGA-BGE reference genome of Holothuria (Platyperona) sanctori: a sea cucumber from the Mediterranean Sea [version 1; peer review: awaiting peer review]

Vasileiadou, K; Dailianis, T; Skouradakis, G; Vernadou, E; Karakasi, D; B�hne, A; Monteiro, R; Fern�ndez, R; Escudero, N; Manousaki, T; Moussy, A; Cruaud, C; Labadie, K; Demirdjian, L; Ndar, A; Wincker, P; H Oliveira, P; Aury, JM; Bortoluzzi, C

An emerging Platynota sp. (Lepidoptera: Tortricidae) infesting blueberry (Vaccinium corymbosum) in the central coast of Peru

Velasquez, Ricardo; Leiva, Ana Maria; Gil-Ordóñez, Alejandra; Perez-Fuentes, Lady Susan; Domínguez, Viviana; Cuellar, Wilmer J.

ERGA-BGE reference genome of the lineid heteronemertean Lineus lacteus (Pilidiophora, Nemertea)

Verdes, Aida; Alvarez-Campos, Patricia; Conejero, María; Riesgo, Ana; Böhne, Astrid; Monteiro, Rita; Palma-Guerrero, Javier; Fernández, Rosa; Gut, Marta; Aguilera, Laura; Câmara Ferreira, Francisco; Cruz, Fernando; Gómez-Garrido, Jèssica; S. Alioto, Tyler; Bortoluzzi, Chiara

Stage-specific transcriptomic analysis reveals insights into the development, reproduction and biological function of allergens in the European house dust mite Dermatophagoides pteronyssinus

Vidal-Quist, José Cristian; Ortego, Félix; Lambrecht, Bart N.; Rombauts, Stephane; Hernández-Crespo, Pedro

The auxin gatekeepers: Evolution and diversification of the YUCCA family

Vijayanathan, Mallika; Faryad, Amna; Abeywickrama, Thanusha D; Christensen, Joachim Møller; Jakobsen Neilson, Elizabeth H

The draft genome of ‘Candidatus Phytoplasma palmae’ strain LY-C2, the phytoplasma associated with coconut lethal yellowing disease, reveals insights into its biological characteristics

Vila-Luna, Sara Elena; Carreón-Anguiano, Karla Gisel; Córdova-Lara, Iván; Sáenz-Carbonell, Luis; Oropeza-Salín, Carlos; Canto-Canché, Blondy

First complete mitogenome assembly of Castanea sativa: structure, comparative genomics, and phylogeny

Villa, Sara; Marchesini, Alexis; Torre, Sara; Bianco, Luca; Fontana, Paolo; De Quattro, Concetta; Moser, Mirko; Piazza, Stefano; Alessandri, Sara; Pavese, Vera; Pollegioni, Paola; Vernesi, Cristiano; Malnoy, Mickael; Marinoni, Daniela Torello; Murolo, Sergio; Dondini, Luca; Mattioni, Claudia; Botta, Roberto; Micheletti, Diego; Palmieri, Luisa; Sebastiani, Federico

Paedomorphic adaptations in a new Heterostigma species: a novel strategy for ascidians to live in soft-bottom habitats

Virgili, Riccardo; Tanduo, Valentina; D’Aniello, Salvatore; Fontana, Angelo; Turon, Xavier; Crocetta, Fabio

The Influence of Cohesin on the Short-Scale Dynamics of Intact and Damaged Chromatin in Different Phases of the Cell Cycle

Viushkov, Vladimir S.; Lomov, Nikolai A.; Kalitina, Polina O.; Potashnikova, Daria M.; Shtompel, Anastasia S.; Ulianov, Sergey V.; Razin, Sergey V.; Rubtsov, Mikhail A.

Genetic parallels in biomineralization of the calcareous sponge Sycon ciliatum and stony corals

Voigt, Oliver; Wilde, Magdalena V; Fröhlich, Thomas; Fradusco, Benedetta; Vargas, Sergio; Wörheide, Gert

Experimental evidence on colchicine's mode of action in human carotid artery plaques

Ehr, Alexander; Steenbuck, Ines Derya; Häfele, Charlotte; Remmersmann, Felix; Vico, Tamara A.; Ehlert, Carolin; Lindner, Diana; Wolf, Dennis; Tholen, Stefan; Schilling, Oliver; Czerny, Martin; Westermann, Dirk; Hilgendorf, Ingo

Genome Skimming of Thysanoptera (Arthropoda, Insecta) and Its Taxonomic and Systematic Applications

Wahlberg, Emma

Carotenoid-based immune response in sea cucumbers relies on newly identified coelomocytes—the carotenocytes

Wambreuse, Noé; Bossiroy, Estelle; David, Frank; Vanwinge, Céline; Fievez, Laurence; Bureau, Fabrice; Gabriele, Sylvain; Karasiewicz, Tania; Mascolo, Cyril; Wattiez, Ruddy; Eeckhaut, Igor; Caulier, Guillaume; Delroisse, Jérôme

Morpho-functional characterisation of cœlomocytes in the aquacultivated sea cucumber Holothuria scabra: From cell diversity to transcriptomic immune response

Wambreuse, Noé; Caulier, Guillaume; Eeckhaut, Igor; Borrello, Laura; Bureau, Fabrice; Fievez, Laurence; Delroisse, Jérôme

Immunogenic Streptococcus equi cell surface proteins identified by ORFeome phage display

Wan, Joshua; Weldon, Evan; Ganser, Gabriella; Morris, Ellen Ruth A.; Hughes, Emma V.; Bordin, Angela I.; Heine, Philip Alexander; Hust, Michael; Cohen, Noah D.; Gill, Jason J.; Liu, Mei

Detection of disk-jet coprecession in a tidal disruption event

Wang, Yanan; Lin, Zikun; Wu, Linhui; Lei, Wei-Hua; Wei, Shuyuan; Zhang, Shuang-Nan; Ji, Long; Del Palacio, Santiago; Baldi, Ranieri D.; Huang, Yang; Liu, Ji-Feng; Zhang, Bing; Yang, Aiyuan; Chen, Ru-Rong; Zhang, Yangwei; Wang, Ai-Ling; Yang, Lei; Charalampopoulos, Panos; Williams-Baldwin, David R. A.; Yao, Zhu-Heng; Xie, Fu-Guo; Bu, Defu; Feng, Hua; Cao, Xinwu; Wu, Hongzhou; Li, Wenxiong; Qiao, Erlin; Leloudas, Giorgos; Anderson, Joseph P.; Shu, Xinwen; Pasham, Dheeraj R.; Zou, Hu; Nicholl, Matt; Wevers, Thomas; Müller-Bravo, Tomás E.; Wang, Jing; Wei, Jian-Yan; Qiu, Yu-Lei; Guo, Wei-Jian; Gutiérrez, Claudia P.; Gromadzki, Mariusz; Inserra, Cosimo; Makrygianni, Lydia; Onori, Francesca; Petrushevska, Tanja; Altamirano, Diego; Galbany, Lluís; Peréz-Torres, Miguel; Chen, Ting-Wan

Exploring the Mitogenomes of Acroneuriinae: The First Report of Gene Rearrangements in Plecoptera Species and Phylogenetic Analyses of Perlidae

Wang, Ying; Niu, Yannan; Qin, Baoni; Cao, Jinjun; Li, Weihai; Murányi, Dávid

First Evidence of Candidate Phyla Radiation in Chronic Hepatitis B Virus-Infected Patients: A Case-Control Metagenomic Study

Wasfy, Reham Magdy; Benseddik, Fatma; Zgheib, Rita; Borentain, Patrick; Alou, Maryam Tidjani; Andrieu, Claudia; Caputo, Aurelia; Raoult, Didier; Gerolami, Rene; Million, Matthieu

Versatile roles of annexin A4 in clear cell renal cell carcinoma: Impact on membrane repair, transcriptional signatures, and composition of the tumor microenvironment

Wess, Maximilian; Rogg, Manuel; Gueib-Picard, Constance; Merz, Annika; Kössinger, Anna L; Feilen, Tobias; Andreev, Grigor; Werner, Martin; Frew, Ian J; Grabbert, Markus; Schilling, Oliver; Schell, Christoph

Hairpin in a haystack: In silico identification and characterization of plant-conserved microRNA in Rafflesiaceae

Wicaksono, Adhityo; Meitha, Karlia; Wan, Kiew-Lian; Isa, Mohd Noor Mat; Parikesit, Arli Aditya; Molina, Jeanmaire

Molecular and Genetic Analysis of the Increased Number of Genes for Trypanosoma cruzi Microtubule Associated Proteins in the Class Kinetoplastida

Winkler, Martin A.; Pan, Alfred A.

A proteotranscriptomic approach to dissect the molecular landscape of human retinoblastoma

Wolf, Julian; Hajdu, Rozina Ida; Boneva, Stefaniya; Godbole, Ira; Stürzbecher, Lucas; Auw-Haedrich, Claudia; Lagrèze, Wolf A.; Agostini, Hansjürgen; Reinhard, Thomas; Tholen, Stefan; Schilling, Oliver; Schlunck, Günther; Bengsch, Bertram; Lange, Clemens

An Atlas of Thyroid Hormone Responsive Genes in Adult Mouse Hypothalamus

Wu, Shijia; Dellinger, Julien; Markossian, Suzy; Dusabyinema, Yves; Guyot, Romain; Hughes, Sandrine; Aubert, Denise; Fackeure, Marie; Gauthier, Karine; Gillet, Benjamin; Jiang, Wenzheng; Flamant, Frédéric

Comparative Genomic and Mitochondrial Phylogenetic Relationships of Ovulidae (Mollusca: Gastropoda) Along the Chinese Coast

Wu, Qiong; Xiang, Peng; Fan, ShiHao; Chen, GuangCheng; Xing, BingPeng

Differential Mitochondrial Genome Expression of Four Skink Species Under High-Temperature Stress and Selection Pressure Analyses in Scincidae

Wu, Xuxiang; Zhan, Lemei; Storey, Kenneth B.; Zhang, Jiayong; Yu, Danna

Genome analysis of colistin-resistant Salmonella isolates from human sources in Guizhou of southwestern China, 2019–2023

Wu, Jingtong; Wen, Yongxian; You, Lv; Wei, Xiaoyu; Wang, Junhua; Zhu, Ge; Li, Shijun

Diversity and Role of Prophages in Pseudomonas aeruginosa: Resistance Genes and Bacterial Interactions

Xavier, Keyla Vitória Marques; Silva, Adrianne Maria de Albuquerque; Luz, Ana Carolina de Oliveira; Silva, Felipe Santana Caboclo; Melo, Beatriz Souza Toscano; Pitta, João Luiz de Lemos Padilha; Leal-Balbino, Tereza Cristina

Benchmarking the PAM compatibility of Cas12a variants for high-throughput yeast genetic variant engineering

Xie, Weiyu; Cai, Zhenkun; Bao, Zehua

Characterization of the Complete Mitogenomes of Four Dacinae Species (Diptera: Tephritidae) with Phylogenetic Analysis

Xu, Deliang; Ding, Shuangmei; Zeng, Xiaojie; Du, Lele

Mitogenomic Insights into Orthocladiinae (Diptera: Chironomidae): Structural Diversity and Phylogenetic Implications

Xu, Hai-Feng; Xiao, Xiu-Ru; Zhang, Zhi-Chao; Li, Yu-Fan; Lin, Xiao-Long

Transcriptomic, biochemical, and microbiome assessments into drought and salinity tolerance in durum wheat mediated by plant growth-promoting bacteria

Yaghoubi Khanghahi, Mohammad; AbdElgawad, Hamada; Curci, Maddalena; Garrigues, Romain; Korany, Shereen Magdy; Alsherif, Emad A; Verbruggen, Erik; Spagnuolo, Matteo; Addesso, Rosangela; Sofo, Adriano; Beemster, Gerrit T S; Crecchio, Carmine

The complete mitochondrial genome of the snapping shrimp, Alpheus brevicristatus De Haan, 1844 (Crustacea, Decapoda, Alpheidae)

Yang, Yan-Bin; Zhu, Fang-Chao; Liu, Xin; Zhao, Lin-Tao; Yu, Shuo; Chen, Xu-Yang

Opposing roles of pseudokinases NRBP1 and NRBP2 in regulating L1 retrotransposition

Yang, Wei; Cong, Shaobo; Li, Ruoyao; Schwarz, Jennifer; Schulze, Thilo; Gevelhoff, Raban A.; Chen, Xinyan; Ullrich, Sara; Falkenstein, Kristina; Ott, Denis; Eixmann, Pia; Trentino, Angelica; Thien, Antje; Heidmann, Thierry; Schulze, Ekkehard; Warscheid, Bettina; Baumeister, Ralf; Qi, Wenjing

Genome and transcriptome analysis of the lignite-degrading Trichoderma cf. simile WF8 strain highlights potential degradation mechanisms

Yao, Jinghua; Chen, Yajuan; Zhuo, Deyu; Chen, Siqiao; Xu, Baichao; Yan, Congwei; Li, Wanrong; Feng, Hui; Deng, Sheng; Cai, Feng M.; Steindorff, Andrei S.; Druzhinina, Irina S.; Xiao, Lei; Wei, Lihui; Daly, Paul

Enhanced drought and salt stress tolerance in Arabidopsis via ectopic expression of the PvMLP19 gene

Yerlikaya, Bayram Ali; Yerlikaya, Seher; Aydin, Abdullah; Yilmaz, Nisa Nur; Bahadır, Sibel; Abdulla, Mohamed Farah; Mostafa, Karam; Kavas, Musa

Genomic Insights into Emerging Multidrug-Resistant Chryseobacterium indologenes Strains: First Report from Thailand

Yinsai, Orathai; Yuantrakul, Sastra; Srisithan, Punnaporn; Zhou, Wenting; Chittaprapan, Sorawit; Intajak, Natthawat; Kruayoo, Thanakorn; Khamnoi, Phadungkiat; Tongjai, Siripong; Daungsonk, Kwanjit

Pseudomonas Species Isolated From Lotus Nodules Are Genetically Diverse and Promote Plant Growth

Yu, Yu-Hsiang; Kurtenbach, Julian; Crosbie, Duncan; Brachmann, Andreas; Marín Arancibia, Macarena

Cohesive data analysis for the identification of prognostic hub genes and significant pathways associated with HER2 + and TN breast cancer types

Zakir, Mahrukh; Saddiqa, Alishbah; Sheikh, Mawara; Zakir, Lalarukh; Sami, Fatima; Ahmad, Faisal Sardar; Rauf, Sadaf Abdul; Ali, Iqra; Muneer, Zahid; Alonazi, Wadi B.; Siddiqi, Abdul Rauf

Alterations in the Expression of a Set of miRNAs in Endometrial Cancer and Their Correlation with Clinical Variables and the p53 Signaling Pathway

Zapata García, Jessica Alejandra

Uncovering the genetic diversity of the malaria parasite antigen MSP2 across Sub-Saharan Africa

Zerebinski, Julia; Broumou, Ioanna; Kimenyi, Kelvin; Aklilu, Eleni; Andrade, Carolina; Babiker, Hamza; Bejon, Philip; Cherif, Mariama; Crompton, Peter; Fançony, Cláudia; Foroogh, Fariba; Gil, José Pedro; Kapulu, Melissa; Kiwuwa, Steven; Kweku, Margaret; Liljander, Anne; Lopes, Dinora; Marsh, Kevin; Mutemi, Doreen; Ngasala, Billy; Normark, Johan; Orikiiriza, Judy; Persson, Kristina E.M.; Portugal, Silvia; Ribacke, Ulf; Sirima, Sodiomon; Sondén, Klara; Sousa, Taís; Traore, Boubacar; Tijani, Muyideen Kolapo; Eckerdal, Nils; Villner, Pär; Ochola-Oyier, Lynette Isabella; Plaza, David; Färnert, Anna

IRF4 expression by NK precursors predetermines exhaustion of NK cells during tumor metastasis

Zhang, Xiaolong; Yin, Zheng; Wu, Jie; Xiang, Xiao; Zou, Dawei; Wang, Guangchuan; Fu, Jinfei; Lan, Peixiang; Minze, Laurie J.; Li, Xian C.; Chen, Wenhao

The distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana resolve the Central Dogma's information flow

Zhong, Ziming; Bailey, Mark; Kim, Yong-In; Afsharyan, Nazanin P; Parker, Briony; Arathoon, Louise; Li, Xiaowei; Rundle, Chelsea A; Behrens, Andrew; Nedialkova, Danny; Slavov, Gancho; Hassani-Pak, Keywan; Lilley, Kathryn S; Theodoulou, Frederica L; Mott, Richard

Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana

Zhong, Ziming; Bailey, Mark; Kim, Yong-In; Afsharyan, Nazanin; Parker, Briony; Arathoon, Louise; Li, Xiaowei; Rundle, Chelsea; Behrens, Andrew; Nedialkova, Danny; Slavov, Gancho; Hassani-Pak, Keywan; Lilley, Kathryn; Theodoulou, Frederica; Mott, Richard

Comparative mitogenomics of Leptographium procerum, Leptographium terebrantis, and Leptographium wingfieldii, an invasive fungal species in Canadian forests

Zubaer, Abdullah; Wai, Alvan; Hausner, Georg

Genome mining of Leptographium wingfieldii, an invasive species in Canadian forests, and related taxa in the order Ophiostomatales for the characterization of secondary metabolites and ribozymes

Zubaer, Abdullah

一种大规模并行dna序列编辑方法及应用

鲍泽华; 邓磊; 蔡震坤

Genetic Polymorphisms of Angiotensin-Converting Enzyme 1 (ACE1) and ACE2 Associated With Severe Acute Respiratory Syndrome COVID-19 in the Palestinian Population

AbuSaleh, Lama; Ereqat, Suheir; Al-Jawabreh, Amer; Nasereddin, Abedelmajeed; AbuSaleh, Lama; Ereqat, Suheir; Al-Jawabreh, Amer; Nasereddin, Abedelmajeed

Altered socio-affective communication and amygdala development in mice with protocadherin10-deficient interneurons

Aerts, Tania; Boonen, Anneleen; Geenen, Lieve; Stulens, Anne; Masin, Luca; Pancho, Anna; Francis, Annick; Pepermans, Elise; Baggerman, Geert; Van Roy, Frans; Wöhr, Markus; Seuntjens, Eve

Biofoams with untapped enzymatic potential produced from beer bagasse by indigenous fungal strains

Aguirre Pranzoni, Celeste; Bonilla, José; Carrillo, Ángeles; López-Vidal, Martín; Aguilera, Leonardo J.; Ariel Ochoa, Nelio; Kurina-Sanz, Marcela

Characterization of a highly thermostable recombinant xylanase from Anoxybacillus ayderensis

Akpinar, Zuleyha; Karaoglu, Hakan

Private and well drinking water are reservoirs for antimicrobial resistant bacteria

Alawi, Marwa; Smyth, Cian; Drissner, David; Zimmerer, Anna; Leupold, Denise; Müller, Daria; Do, Thi Thuy; Velasco-Torrijos, Trinidad; Walsh, Fiona

Amplicon-Based Bisulfite Conversion-NGS DNA Methylation Analysis Protocol

Albrecht, Claudia; Bashtrykov, Pavel; Jeltsch, Albert

CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications

Alessandri, Simone; Ratto, Maria L; Rabellino, Sergio; Piacenti, Gabriele; Contaldo, Sandro Gepiro; Pernice, Simone; Beccuti, Marco; Calogero, Raffaele A; Alessandri, Luca

Bioinformatics and Computational Biology

Ali, Muhammad Amjad; Zahoor, Adil; Niaz, Zeenat; Jabran, Muhammad; Anas, Muhammad; Shafique, Ikhlas; Ahmad, Hafiz Muhammad; Usama, Muhammad; Abbas, Amjad

Phenomics and genomic features of Enterococcus avium IRMC1622a isolated from a clinical sample of hospitalized patient

AlJindan, Reem; Mahmoud, Nehal; AlEraky, Doaa M.; Almandil, Noor B.; AbdulAzeez, Sayed; Borgio, J. Francis

Genomic analysis of multidrug-resistant Delftia tsuruhatensis isolated from raw bovine milk

Andriyanov, Pavel A.; Kashina, Daria D.; Menshikova, Alena N.

Two male-killing Wolbachia from Drosophila birauraia that are closely related but distinct in genome structure

Arai, Hiroshi; Watada, Masayoshi; Kageyama, Daisuke

Novel hepatocyte-like liver organoids recapitulate crucial mature hepatic functions

Ardisasmita, AI; Joore, IP; Levy, N; Myszczyszyn, A; Marsee, A; Sinnige, T; Ruiter, J; Ferdinandusse, S; Dudaryeva, O; Gruber, E; Daive, V; Levato, R; Spee, B; Verstegen, M.M.A.; Laan, L.J.W.; Nieuwenhuis, EES; Schene, IF; Fuchs, SA

American lobster (Homarus americanus) hepatopancreas transcriptome reveals the significance of chitin-related genes during impoundment shell disease

Argenta, Nicolas; Rampaul, Marianna; Clark, K. Fraser

In silico exploration of phenolics as modulators of penicillin binding protein (PBP) 2× of Streptococcus pneumoniae

Aribisala, Jamiu Olaseni; S’thebe, Nosipho Wendy; Sabiu, Saheed

Generation of functionally active resident macrophages from adipose tissue by 3D cultures

Arlat, Adèle; Renoud, Marie-Laure; Nakhle, Jean; Thomas, Miguel; Fontaine, Jessica; Arnaud, Emmanuelle; Dray, Cédric; Authier, Hélène; Monsarrat, Paul; Coste, Agnès; Casteilla, Louis; Ousset, Marielle; Cousin, Béatrice

Unlocking a Potent Chitin Saccharification System in a Novel Bacterium Through Omics and Bioinformatics

Arnold, Nathanael David

Comparative study of chloroplast genomes across seven Salacca species

Arshad, Arslan; Aditama, Redi; Rahayu, Megayani Sri; Natawijaya, Azis; Matra, Deden Deradjat; Sudarsono, Sudarsono

In-Silico Perspectives on the Potential Therapeutic Aids of Hesperetin Derivatives for Lung Cancer

Asiri, Abdulaziz

Identification and Characterization of ATOH7-Regulated Target Genes and Pathways in Human Neuroretinal Development

Atac, David; Maggi, Kevin; Feil, Silke; Maggi, Jordi; Cuevas, Elisa; Sowden, Jane C.; Koller, Samuel; Berger, Wolfgang

Integrated analysis of transcriptome and epigenome reveals ENSR00000272060 as a potential biomarker in gastric cancer

Bahrami, Basireh; Wolfien, Markus; Nikpour, Parvaneh

Coordinated metabolic adaptation of Arabidopsis thaliana to high light

Balcke, Gerd Ulrich; Vahabi, Khabat; Giese, Jonas; Finkemeier, Iris; Tissier, Alain

Predictability of genomic evolution of populations with contrasting initial history

Barreira, Elias Miguel da Costa

The genome of the blind bee louse fly reveals deep convergences with its social host and illuminates Drosophila origins

Bastide, Héloïse; Legout, Hélène; Dogbo, Noé; Ogereau, David; Prediger, Carolina; Carcaud, Julie; Filée, Jonathan; Garnery, Lionel; Gilbert, Clément; Marion-Poll, Frédéric; Requier, Fabrice; Sandoz, Jean-Christophe; Yassin, Amir

Cuscuta campestris fine-tunes gene expression during haustoriogenesis as an adaptation to different hosts

Bawin, Thomas; Didriksen, Alena; Faehn, Corine; Olsen, Stian; Sørensen, Iben; Rose, Jocelyn K C; Krause, Kirsten

Correlation of Immunomodulatory Cytokines with Tumor Volume and Cerebrospinal Fluid in Vestibular Schwannoma Patients

Becker, Anna-Louisa; Scholle, Leila; Klause, Clara Helene; Staege, Martin Sebastian; Strauss, Christian; Otto, Markus; Rampp, Stefan; Scheller, Christian; Leisz, Sandra

Enhanced weathering in the US Corn Belt delivers carbon removal with agronomic benefits

Beerling, David J.; Epihov, Dimitar Z.; Kantola, Ilsa B.; Masters, Michael D.; Reershemius, Tom; Planavsky, Noah J.; Reinhard, Christopher T.; Jordan, Jacob S.; Thorne, Sarah J.; Weber, James; Val Martin, Maria; Freckleton, Robert P.; Hartley, Sue E.; James, Rachael H.; Pearce, Christopher R.; DeLucia, Evan H.; Banwart, Steven A.

Biodiversity and poten al func onality of biofilmsediment biotope in La Muerte lagoon, Monegros desert, Spain

Berlanga, Mercedes; Picart, Pere; Blasco, Arnau; Benaiges-Fernandez, Robert; Guerrero, Ricardo; Butturini, Andrea; Urmeneta, Jordi

A homozygous humanWNT11loss-of-function variant associated with laterality, heart and renal defects

Berns, Henrike; Haas, Maximilian; Bakey, Zeineb; Brislinger-Engelhardt, Magdalena Maria; Schmidts, Miriam; Walentek, Peter

Pan-flavivirus analysis reveals sfRNA-independent, 3′ UTR-biased siRNA production from an insect-specific flavivirus

Besson, Benoit; Overheul, Gijs J.; Wolfinger, Michael T.; Junglen, Sandra; Rij, Ronald P.

Characterization of Verona Integron-Encoded Metallo-β-Lactamase-Type Carbapenemase-Producing Escherichia coli Isolates Collected over a 16-Year Period in Bolzano (Northern Italy)

Bianconi, Irene; Spath, Manuela; Aschbacher, Richard; Pedron, Renato; Wieser, Stefanie; Pagani, Elisabetta

Disseminated Echovirus 11 infection in a newborn in the Province of Bolzano, Italy

Bianconi, Irene; Battisti, Laura; Staffler, Alex; Giacobazzi, Elisabetta; Masi, Elisa; Incrocci, Elisabetta; Bellutti, Marion; Fontana, Stefano; Stefanelli, Paola; Buttinelli, Gabriele; Pagani, Elisabetta

Metaproteomics for Coinfections in the Upper Respiratory Tract: The Case of COVID-19

Bihani, Surbhi; Gupta, Aryan; Mehta, Subina; Rajczewski, Andrew; Griffin, Timothy; Jagtap, Pratik; Srivastava, Sanjeeva

Genome-wide mapping of RPA1 and RAD9 reveals the management of polycistronic transcription, replication initiation, and responses to replication stress inLeishmania

Black, J.A.; Virgilio, S; Bastos, M.S.; Silva, G.L.A.; Damasceno, J.D.; Lapsley, C; McCulloch, R; Tosi, L.R.O.

RNA binding by Periphilin plays an essential role in initiating silencing by the HUSH complex

Bloor, Stuart; Wit, Niek; Lehner, Paul J

Catecholamine treatment induces reversible heart injury and cardiomyocyte gene expression

Bode, Christine; Preissl, Sebastian; Hein, Lutz; Lother, Achim

Dynamics of cardiomyocyte gene expression and reversibility of catecholamine-induced heart injury

Bode, Christine; Preissl, Sebastian; Hein, Lutz; Lother, Achim

Phage DNA Extraction, Genome Assembly, and Genome Closure

Boeckman, Justin; Liu, Mei; Ramsey, Jolene; Gill, Jason

Biphasic response of human iPSC-derived neural network activity following exposure to a sarin-surrogate nerve agent

Bogguri, Chandrakumar; George, Vivek Kurien; Amiri, Beheshta; Ladd, Alexander; Hum, Nicholas R.; Sebastian, Aimy; Enright, Heather A.; Valdez, Carlos A.; Mundhenk, T. Nathan; Cadena, Jose; Lam, Doris

The multifaceted role of vitreous hyalocytes: Orchestrating inflammation, angiomodulation and erythrophagocytosis in proliferative diabetic retinopathy

Boneva, Stefaniya K.; Wolf, Julian; Jung, Malte; Prinz, Gabriele; Chui, Toco Y. P.; Jauch, Jacqueline; Drougard, Anne; Pospisilik, J. Andrew; Schlecht, Anja; Bucher, Felicitas; Rosen, Richard B.; Agostini, Hansjürgen; Schlunck, Günther; Lange, Clemens A. K.

Pulsar timing array constraints on the cosmological magnetic field from quark confinement epoch

Boyer, T.; Neronov, A.

Identification of the Expression Patterns of Fatty Acid Oxidation Genes in a Heterogenic Cardiomyopathy Patient Cohort

Brink, Alyssa van den

Complete genome sequence of the Exiguobacterium bacteriophage

Camacho-Beltrán, Erika; Morales-Aguilar, Juan José; López-Meyer, Melina; Rincón-Enríquez, Gabriel; Quiñones-Aguilar, Evangelina Esmeralda

Complete genome sequence of the Microbacterium enclense bacteriophage phiMiGM15

Camacho-Beltrán, Erika; Morales-Aguilar, Juan José; López-Meyer, Melina; Rincón-Enríquez, Gabriel; Quiñones-Aguilar, Evangelina Esmeralda

Genomic and functional analysis of the mucinolytic species Clostridium celatum, Clostridium tertium, and Paraclostridium bifermentans

Candeliere, Francesco; Musmeci, Eliana; Sola, Laura; Amaretti, Alberto; Raimondi, Stefano; Rossi, Maddalena

In vivo evolution to hypermucoviscosity and ceftazidime/avibactam resistance in a liver abscess caused by Klebsiella pneumoniae sequence type 512

Capitani, Valerio; Arcari, Gabriele; Ambrosi, Cecilia; Scribano, Daniela; Ceparano, Mariateresa; Polani, Riccardo; De Francesco, Alice; Raponi, Giammarco; Ceccarelli, Giancarlo; Villari, Paolo; Palamara, Anna Teresa; Marzuillo, Carolina; Carattoli, Alessandra

Pangeo environment in Galaxy Earth System supported by Fair-Ease

Carval, Thierry; Jossé, Marie; Detoc, Jérôme

Genomics and evolutionary analysis of Chlorella variabilis-infecting viruses demarcate criteria for defining species of giant viruses

Carvalho, João Victor R. P.; Carlson, Roger M.; Ghosh, Jayadri; Queiroz, Victória F.; Oliveira, Ellen G.; Botelho, Bruna B.; Filho, Clécio A. C.; Agarkova, Irina V.; McClung, O. William; Van Etten, James L.; Dunigan, David D.; Rodrigues, Rodrigo A. L.

Plant Thermosensors

Casal, Jorge J.; Murcia, Germán; Bianchimano, Luciana

Pannonibacter anstelovis sp. nov. Isolated from Two Cases of Bloodstream Infections in Paediatric Patients

Castellana, Stefano; De Laurentiis, Vittoriana; Bianco, Angelica; Del Sambro, Laura; Grassi, Massimo; De Leonardis, Francesco; Derobertis, Anna Maria; De Carlo, Carmen; Sparapano, Eleonora; Mosca, Adriana; Stolfa, Stefania; Ronga, Luigi; Santacroce, Luigi; Chironna, Maria; Parisi, Michela; Capozzi, Loredana; Parisi, Antonio

Unveiling soil bacterial ecosystems in andean citrus orchards of Santander, Colombia

Castillo-Villamizar, Genis Andrés; Tapia-Perdomo, Valentina; Maldonado-Pava, Julieth; Santamaría-Gálvis, Pedro; Sayavedra, Lizbeth; Hernandez-Torres, Jorge; Puentes-Cala, Edinson

Whole-genome resequencing identifies exonic single-nucleotide variations in terpenoid biosynthesis genes of the medicinal and aromatic plant common sage (Salvia officinalis L.)

Ceylan, Fatima; Uncu, Ayse Ozgur; Soyturk Patat, Aysenur; Uncu, Ali Tevfik

The fork protection complex promotes parental histone recycling and epigenetic memory

Charlton, Sebastian Jespersen; Flury, Valentin; Kanoh, Yutaka; Genzor, Aitana Victoria; Kollenstart, Leonie; Ao, Wantong; Brøgger, Peter; Weisser, Melanie Bianca; Adamus, Marek; Alcaraz, Nicolas; Fenffe, Charlotte M; Mattiroli, Francesca; Montoya, Guillermo; Masai, Hisao; Groth, Anja; Thon, Geneviève

Genome-Wide Analysis of the Common Fig (Ficus carica L.) R2R3-MYB Genes Reveals Their Structure, Evolution, and Roles in Fruit Color Variation

Chatti, Khaled; Kmeli, Narjes; Bettaieb, Inchirah; Hamdi, Jihen; Gaaied, Sonia; Mlouka, Rania; Mars, Messaoud; Bouktila, Dhia

Canonical androgen response element motifs are tumor suppressive regulatory elements in the prostate

Chen, Xuanrong; Augello, Michael A.; Liu, Deli; Lin, Kevin; Hakansson, Alex; Sjöström, Martin; Khani, Francesca; Deonarine, Lesa D.; Liu, Yang; Travascio-Green, Jaida; Wu, Jiansheng; Chan, Un In; Owiredu, Jude; Loda, Massimo; Feng, Felix Y.; Robinson, Brian D.; Davicioni, Elai; Sboner, Andrea; Barbieri, Christopher E.

Genus-wide analysis of Trichoderma antagonism toward Pythium and Globisporangium plant pathogens and the contribution of cellulases to the antagonism

Chen, Siqiao; Daly, Paul; Anjago, Wilfred Mabeche; Wang, Rong; Zhao, Yishen; Wen, Xian; Zhou, Dongmei; Deng, Sheng; Lin, Xisha; Voglmeir, Josef; Cai, Feng; Shen, Qirong; Druzhinina, Irina S.; Wei, Lihui

Molecular Phylogenetics and Light Microscopy Reveal “True” and “False” Calacarines and Novel Genital Structures in Gall Mites (Acariformes, Eriophyoidea)

Chetverikov, Philipp E.; Craemer, Charnie; Gankevich, Vladimir D.; Le, Nhung Thi Tuyet; Nguyen, Viet Duc; Trinh, Hoat Xuan; Amrine, James

Potential Ancestral Conoidean Toxins in the Venom Cocktail of the Carnivorous Snail Raphitoma purpurea (Montagu, 1803) (Neogastropoda: Raphitomidae)

Chiappa, Giacomo; Fassio, Giulia; Modica, Maria Vittoria; Oliverio, Marco

A nationwide survey of antimicrobial resistance of Escherichia coli isolated from broiler chickens in Malawi

Chisembe, Pilirani; Suzuki, Masato; Dao, Duc Trung; Njunga, Gilson; Nkhoma, Joseph; Mthilakuwili, Lecollins; Kinoshita-Daitoku, Ryo; Kuroda, Eisuke; Kimura, Kouji; Shibayama, Keigo

RepEnTools: an automated repeat enrichment analysis package for ChIP-seq data reveals hUHRF1 Tandem-Tudor domain enrichment in young repeats

Choudalakis, Michel; Bashtrykov, Pavel; Jeltsch, Albert

Proteometabolomics of initial and recurrent glioblastoma highlights an increased immune cell signature with altered lipid metabolism

Cosenza-Contreras, Miguel; Schäfer, Agnes; Sing, Justin; Cook, Lena; Stillger, Maren N; Chen, Chia-Yi; Villacorta Hidalgo, Jose; Pinter, Niko; Meyer, Larissa; Werner, Tilman; Bug, Darleen; Haberl, Zeno; Kübeck, Oliver; Zhao, Kai; Stei, Susanne; Gafencu, Anca Violeta; Ionita, Radu; Brehar, Felix M; Ferrer-Lozano, Jaime; Ribas, Gloria; Cerdá-Alberich, Leo; Martí-Bonmatí, Luis; Nimsky, Christopher; Van Straaten, Alexis; Biniossek, Martin L; Föll, Melanie; Cabezas-Wallscheid, Nina; Büscher, Jörg; Röst, Hannes; Arnoux, Armelle; Bartsch, Jörg W; Schilling, Oliver

The Unique Specialization of Olfaction in the Senegalese Sole (Solea Senegalensis). Smelling in Co2 Acidified Water Triggers Nostril Specific Immune Processes

Costa, Rita A.; Hubbard, Peter; Manchado, Manuel; Power, Deborah M.; Velez, Zélia

PCID2 dysregulates transcription and viral RNA processing to promote HIV-1 latency

Crespo, Raquel; Ne, Enrico; Reinders, Julian; Meier, Jenny I. J.; Li, Chengcheng; Jansen, Sanne; Górska, Alicja; Koçer, Selin; Kan, Tsung Wai; Doff, Wouter; Dekkers, Dick; Demmers, Jeroen; Palstra, Robert-Jan; Rao, Shringar; Mahmoudi, Tokameh

Revealing Binding and Unbinding Pathways of Small Molecules and Peptides to Enzymes with Enhanced Sampling Methods

Croney, Kayla

Identification and functional characterisation of a locus for target site integration in Fusarium graminearum

Darino, Martin; Urban, Martin; Kaur, Navneet; Machado Wood, Ana; Grimwade-Mann, Mike; Smith, Dan; Beacham, Andrew; Hammond-Kosack, Kim

Mitigating candidiasis with acarbose by targeting Candida albicans α-glucosidase: in-silico, in-vitro and transcriptomic approaches

David, Helma; Vasudevan, Sahana; Solomon, Adline Princy

The genomic and phylogenetic analysis of Marseillevirus cajuinensis raises questions about the evolution of Marseilleviridae lineages and their taxonomical organization

Azevedo, Bruna Luiza; Queiroz, Victória Fulgêncio; Aquino, Isabella Luiza Martins; Machado, Talita Bastos; Assis, Felipe Lopes; Reis, Erik; Araújo Júnior, João Pessoa; Ullmann, Leila Sabrina; Colson, Philippe; Greub, Gilbert; Aylward, Frank; Rodrigues, Rodrigo Araújo Lima; Abrahão, Jônatas Santos

The mitochondrial genome sequence of Syagrus coronata (Mart.) Becc. (Arecaceae) is characterized by gene insertion within intergenic spaces

Melo, Suzyanne Morais Firmino; Marques, André; Almeida, Cícero

Apoplastomes of contrasting cacao genotypes to witches’ broom disease reveals differential accumulation of PR proteins

De Oliveira, Ivina Barbosa; Alves, Saline dos Santos; Ferreira, Monaliza Macêdo; Santos, Ariana Silva; Farias, Keilane Silva; Assis, Elza Thaynara Cardoso de Menezes; Mora-Ocampo, Irma Yuliana; Muñoz, Jonathan Javier Mucherino; Costa, Eduardo Almeida; Gramacho, Karina Peres; Pirovani, Carlos Priminho

Mitochondrial genome of Hancornia speciosa gomes: intergenic regions containing retrotransposons and predicted genes

Souza, Fernanda Danielle; Marques, André; Almeida, Cícero

The seeds of Plantago lanceolata comprise a stable core microbiome along a plant richness gradient

Souza, Yuri Pinheiro Alves; Schloter, Michael; Weisser, Wolfgang; Huang, Yuanyuan; Schulz, Stefanie

Nonpreferential but Detrimental Accumulation of Macrophages With Clonal Hematopoiesis-Driver Mutations in Cardiovascular Tissues—Brief Report

Dederichs, Tsai-Sang; Yerdenova, Assel; Horstmann, Hauke; Vico, Tamara Antonela; Nübling, Simone; Peyronnet, Rémi; Pfeifer, Dietmar; Muehlen, Constantin; Heidt, Timo; Wolf, Dennis; Czerny, Martin; Westermann, Dirk; Hilgendorf, Ingo

ZFP982 confers mouse embryonic stem cell characteristics by regulating expression of Nanog, Zfp42, and Dppa3

Dehghanian, Fariba; Bovio, Patrick Piero; Gather, Fabian; Probst, Simone; Naghsh-Nilchi, Amirhosein; Vogel, Tanja

Long-Read Sequencing and De Novo Genome Assembly Pipeline of Two Plasmodium falciparum Clones (Pf3D7, PfW2) Using Only the PromethION Sequencer from Oxford Nanopore Technologies without Whole-Genome Amplification

Delandre, Océane; Lamer, Ombeline; Loreau, Jean-Marie; Papa Mze, Nasserdine; Fonta, Isabelle; Mosnier, Joel; Gomez, Nicolas; Javelle, Emilie; Pradines, Bruno

Atlas of cardiac endothelial cell enhancer elements linking the mineralocorticoid receptor to pathological gene expression

Deng, Lisa; Pollmeier, Luisa; Bednarz, Rebecca; Cao, Can; Laurette, Patrick; Wirth, Luisa; Mamazhakypov, Argen; Bode, Christine; Hein, Lutz; Gilsbach, Ralf; Lother, Achim

Massively parallel CRISPR-assisted homologous recombination enables saturation editing of full-length endogenous genes in yeast

Deng, Lei; Zhou, Yi-Lian; Cai, Zhenkun; Zhu, Jie; Li, Zenan; Bao, Zehua

Long-read datasets of Kayu Bawang (Azadirachta excelsa (Jack) Jacobs) from 3 different identified seed stands in Bengkulu (Sumatra), Indonesia and its phylogenetic relationships

Depari, Efratenta Katherina; Wijayanto, Nurheni; Karlinasari, Lina; Rafi, Mohamad; Siregar, Iskandar Zulkarnaen

The effect of successive summer drought periods on bacterial diversity along a plant species richness gradient

Souza, Yuri Pinheiro Alves; Siani, Roberto; Albracht, Cynthia; Huang, Yuanyuan; Eisenhauer, Nico; Vogel, Anja; Wagg, Cameron; Schloter, Michael; Schulz, Stefanie

JAK2V617F Mutation in Endothelial Cells of Patients with Atherosclerotic Carotid Disease

Diz-Küçükkaya, Reyhan; İyigün, Taner; Albayrak, Özgür; Eker, Candan; Günel, Tuba

Changes in the Expression of Proteins Associated with Neurodegeneration in the Brains of Mice after Infection with Influenza A Virus with Wild Type and Truncated NS1

Donátová, Karin; Mladá, Miriam; Lopušná, Katarína; Baran, Filip; Betáková, Tatiana

Specific DNMT3C flanking sequence preferences facilitate methylation of young murine retrotransposons

Dossmann, Leonie; Emperle, Max; Dukatz, Michael; Mendoza, Alex; Bashtrykov, Pavel; Jeltsch, Albert

Identification of epigenetic modifiers essential for growth and survival of AML1/ETO-positive leukemia

Duque-Afonso, Jesús; Veratti, Pia; Rehman, Usama-Ur; Herzog, Heike; Mitschke, Jan; Greve, Gabriele; Eble, Julian; Berberich, Bettina; Thomas, Johanna; Pantic, Milena; Waterhouse, Miguel; Gentile, Gaia; Heidenreich, Olaf; Miething, Cornelius; Lübbert, Michael

Genomic analysis of a spontaneous unifoliate mutant reveals gene candidates associated with compound leaf development in Vigna unguiculata [L] Walp

Edet, Offiong Ukpong; Ubi, Benjamin Ewa; Ishii, Takayoshi

Evolutionary Structure Conservation and Covariance Scores

Eggenhofer, Florian; Siederdissen, Christian

Downregulation of HNF4A enables transcriptomic reprogramming during the hepatic acute-phase response

Ehle, Charlotte; Iyer-Bierhoff, Aishwarya; Wu, Yunchen; Xing, Shaojun; Kiehntopf, Michael; Mosig, Alexander S.; Godmann, Maren; Heinzel, Thorsten

Contrasting microbial communities drive iron cycling across global biomes

Epihov, Dimitar; Bryce, Casey

Iron Chelation in Soil: Scalable Biotechnology for Accelerating Carbon Dioxide Removal by Enhanced Rock Weathering

Epihov, Dimitar Z.; Banwart, Steven A.; McGrath, Steve P.; Martin, David P.; Steeley, Isabella L.; Cobbold, Vicky; Kantola, Ilsa B.; Masters, Michael D.; DeLucia, Evan H.; Beerling, David J.

Unveiling Agricultural Biotechnological Prospects: The Draft Genome Sequence of Stenotrophomonas geniculata LGMB417

Ercole, Tairine Graziella; Kava, Vanessa Merlo; Petters-Vandresen, Desirrê Alexia Lourenço; Ribeiro, Renan Augusto; Hungria, Mariangela; Galli, Lygia Vitoria

Rbm3 deficiency leads to transcriptome-wide splicing alterations

Erkelenz, Steffen; Grzonka, Marta; Papadakis, Antonios; Schaal, Heiner; Hoeijmakers, Jan H. J.; Gyenis, Ákos

Identification of Pathogenic Copy Number Variants in Mexican Patients With Inherited Retinal Dystrophies Applying an Exome Sequencing Data-Based Read-Depth Approach

Fabian-Morales, Gerardo E.; Ordoñez-Labastida, Vianey; Garcia-Martínez, Froylan; Montes-Almanza, Luis; Zenteno, Juan C.

Evidence for phosphate-dependent control of symbiont cell division in the model anemone Exaiptasia diaphana

Faulstich, Nathan G.; Deloach, Alexis R.; Ksor, Ykok B.; Mesa, Gabriel H.; Sharma, Daiven S.; Sisk, Sebastian L.; Mitchell, Geoffrey C.

LAMA2-CMD: establishment of a new gene therapy strategy using an in vitro model

Fernandes, Diogo Rodrigues

TcSERPIN, an inhibitor that interacts with cocoa defense proteins and has biotechnological potential against human pathogens

Ferreira, Monaliza Macêdo; Farias, Keilane Silva; Zugaib, Maria; Alves, Akyla Maria Martins; Amaral, Geiseane Velozo; Santos, Maria Luíza do Carmo; Freitas, Andria dos Santos; Santana, Brenda Conceição Guimarães; Santos Júnior, Sérgio Liberato; Mora-Ocampo, Irma Yuliana; Santos, Ariana Silva; Silva, Marcelo Fernandes; Andrade, Bruno Silva; Pirovani, Carlos Priminho

Expanding the Scope of Adenoviral Vectors by Utilizing Novel Tools for Recombination and Vector Rescue

Fischer, Julian; Fedotova, Ariana; Bühler, Clara; Darriba, Laura; Schreiner, Sabrina; Ruzsics, Zsolt

PROSER1 modulates DNA demethylation through dual mechanisms to prevent syndromic developmental malformations

Fleming, Anna; Knatko, Elena V; Li, Xiang; Zoch, Ansgar; Heckhausen, Zoe; Stransky, Stephanie; Brenes, Alejandro J; Sidoli, Simone; Hajkova, Petra; O'Carroll, Dónal; Rasmussen, Kasper D

Evaluation of the long-term effects of anaerobic digestion on bovine manure resistomes and mobilomes and the molecular and microbial mechanisms involved

Flores Orozco, Daniel

Amazonian Bacteria from River Sediments as a Biocontrol Solution against Ralstonia solanacearum

Fonseca, Jennifer Salgado da; Sousa, Thiago Fernandes; Almeida, Suene Vanessa Reis de; Silva, Carina Nascimento; Castro, Gleucinei Dos Santos; Yamagishi, Michel Eduardo Beleza; Koolen, Hector Henrique Ferreira; Hanada, Rogério Eiji; Silva, Gilvan Ferreira da

Mineração genômica e identificação de moléculas com potencial biotecnológico da microbiota amazônica

Fonseca, Jennifer Salgado da

The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update

=Galaxy Community

Jumping through hoops: Structural rearrangements and accelerated mutation rates on Dendrodorididae (Mollusca: Nudibranchia) mitogenomes rumble their evolution

Galià-Camps, Carles; Schell, Tilman; Enguídanos, Alba; Pegueroles, Cinta; Arnedo, Miquel A.; Ballesteros, Manuel; Valdés, Ángel; Greve, Carola

DIMet: An open-source tool for Differential analysis of targeted Isotope-labeled Metabolomics data

Galvis, Johanna; Guyon, Joris; Dartigues, Benjamin; Hecht, Helge; Grüning, Björn; Specque, Florian; Soueidan, Hayssam; Karkar, Slim; Daubon, Thomas; Nikolski, Macha

Land use intensity differently affects soil microbial functional communities in arable fields

Gao, Chenguang; Hannula, S. Emilia; Bodegom, Peter M.; Bezemer, T. Martijn; Vries, Franciska T.; Hassink, Jan; Zandt, Michiel H.; Moinet, Gabriel Y. K.

Antibiotic resistance, plasmids, and virulence-associated markers in human strains of Campylobacter jejuni and Campylobacter coli isolated in Italy

Garcia-Fernandez, Aurora; Janowicz, Anna; Marotta, Francesca; Napoleoni, Maira; Arena, Sergio; Primavilla, Sara; Pitti, Monica; Romantini, Romina; Tomei, Fiorella; Garofolo, Giuliano; Villa, Laura

bio2Byte Tools deployment as a Python package and Galaxy tool to predict protein biophysical properties

Gavalda-Garcia, Jose; Díaz, Adrián; Vranken, Wim

bio2Byte Tools deployment as a Python package and Galaxy tool to predict protein biophysical properties

Gavalda-Garcia, Jose; Diaz, Adrian; Vranken, Wim

Mitogenomics providing new insights into the phylogenetic structure of subfamily Panchaetothripinae (Thripidae: Terebrantia)

Ghosh, Abhishek; Tyagi, Kaomud; Banerjee, Dhriti; Kumar, Vikas

Suppressive cancer nonstop extension mutations increase C-terminal hydrophobicity and disrupt evolutionarily conserved amino acid patterns

Ghosh, Avantika; Riester, Marisa; Pal, Jagriti; Lainde, Kadri-Ann; Tangermann, Carla; Wanninger, Angela; Dueren, Ursula K.; Dhamija, Sonam; Diederichs, Sven

Torpor and Hibernation: Metabolic and Physiological Paradigms

Giroud, Sylvain; Henning, Robert; Yamaguchi, Yoshifumi; Terrien, Jérémy

Detection of KPC-216, a Novel KPC-3 Variant, in a Clinical Isolate of Klebsiella pneumoniae ST101 Co-Resistant to Ceftazidime-Avibactam and Cefiderocol

Giufrè, Maria; Errico, Giulia; Del Grosso, Maria; Pagnotta, Michela; Palazzotti, Bernardetta; Ballardini, Milva; Pantosti, Annalisa; Meledandri, Marcello; Monaco, Monica

Postnatal persistence of hippocampal Cajal-Retzius cells has a crucial role in the establishment of the hippocampal circuit

Glærum, Ingvild Lynneberg; Dunville, Keagan; Moan, Kristian; Krause, Maike; Montaldo, Nicola Pietro; Kirikae, Hinako; Nigro, Maximiliano Jose; Sætrom, Pål; Loon, Barbara; Quattrocolo, Giulia

Multiomic profiling of medulloblastoma reveals subtype-specific targetable alterations at the proteome and N-glycan level

Godbole, Shweta; Voß, Hannah; Gocke, Antonia; Schlumbohm, Simon; Schumann, Yannis; Peng, Bojia; Mynarek, Martin; Rutkowski, Stefan; Dottermusch, Matthias; Dorostkar, Mario M.; Korshunov, Andrey; Mair, Thomas; Pfister, Stefan M.; Kwiatkowski, Marcel; Hotze, Madlen; Neumann, Philipp; Hartmann, Christian; Weis, Joachim; Liesche-Starnecker, Friederike; Guan, Yudong; Moritz, Manuela; Siebels, Bente; Struve, Nina; Schlüter, Hartmut; Schüller, Ulrich; Krisp, Christoph; Neumann, Julia E.

The performance of biochar waste-derived electrodes in different bio-electrochemical applications

Goglio, Andrea; Carrara, Arianna; Elboghdady, Hager Galal Elsayed; Cucina, Mirko; Clagnan, Elisa; Soggia, Gabriele; De Nisi, Patrizia; Adani, Fabrizio

BTR: a bioinformatics tool recommendation system

Green, Ryan; Qu, Xufeng; Liu, Jinze; Yu, Tingting

Prostaglandin D2 receptor 2 downstream signaling and modulation of type 2 innate lymphoid cells from patients with asthma

Gress, Christina; Fuchs, Maximilian; Carstensen-Aurèche, Saskia; Müller, Meike; Hohlfeld, Jens M.

Transcriptomic characterization of the human segmental endotoxin challenge model

Gress, Christina; Litzenburger, Tobias; Schmid, Ramona; Xiao, Ke; Heissig, Florian; Muller, Meike; Gupta, Abhya; Hohlfeld, Jens M.

Three feminizing Wolbachia strains in a single host species: comparative genomics paves the way for identifying sex reversal factors

Grève, Pierre; Moumen, Bouziane; Bouchon, Didier

ProSwats: A Proxy-based Scientific Workflow Retrieval Approach by Bridging the Gap between Textual and Structural Semantics

Gu, Yang; Cao, Jian; Qian, Shiyou; Zhu, Nengjun; Guan, Wei

Genomic epidemiology of the primary methicillin-resistant Staphylococcus aureus clones causing invasive infections in Paraguayan children

Guillén, Rosa; Salinas, Claudia; Mendoza-Álvarez, Alejandro; Rubio Rodríguez, Luis A; Usera, Ana; Lorenzo-Salazar, José M; González-Montelongo, Rafaela; Flores, Carlos; Rodríguez, Fátima

Mitogenome-Based Phylogeny with Divergence Time Estimates Revealed the Presence of Cryptic Species within Heptageniidae (Insecta, Ephemeroptera)

Guo, Zhi-Qiang; Shen, Chen-Yang; Cheng, Hong-Yi; Chen, Yu-Xin; Wu, Hui-Yuan; Storey, Kenneth B.; Yu, Dan-Na; Zhang, Jia-Yong

Molecular characteristics of Cryptosporidium spp. in human cases in five Finnish hospital districts during 2021: first findings of Cryptosporidium mortiferum (Cryptosporidium chipmunk genotype I) in Finland

Häkkänen, Tessa; Rimhanen-Finne, Ruska; Antikainen, Jenni; Ruotsalainen, Eeva; Vainio, Anni

Wall-Associated Kinase (WAK) and WAK-like Kinase Gene Family in Sugar Beet: Genome-Wide Characterization and In Silico Expression Analysis in Response to Beet Cyst Nematode (Heterodera schachtii Schmidt) Infection

Hamdi, Jihen; Kmeli, Narjes; Bettaieb, Inchirah; Bouktila, Dhia

Reverse vaccinology approaches to design a potent multiepitope vaccine against the HIV whole genome: immunoinformatic, bioinformatics, and molecular dynamics approaches

Hashempour, Ava; Khodadad, Nastaran; Akbarinia, Shokufeh; Ghasabi, Farzane; Ghasemi, Younes; Nazar, Mohamad Matin Karbalaei Ali; Falahi, Shahab

Complete mitochondrial genome of the Satanas beetle, Dynastes satanas Moser, 1909 (Coleoptera: Scarabaeidae)

He, Xunuo; Wei, Shuang; Li, Panpan; Li, Xianfeng

A novel deep-benthic sea cucumber species of Benthodytes (Holothuroidea, Elasipodida, Psychropotidae) and its comprehensive mitochondrial genome sequencing and evolutionary analysis

He, Yingying; Zhao, Hancheng; Wang, Yongxin; Qu, Changfeng; Gao, Xiangxing; Miao, Jinlai

Quantum chemistry based prediction of electron ionization mass spectra for environmental chemicals

Hecht, Helge; Rojas, Wudmir Y.; Ahmad, Zargham; Křenek, Aleš; Klánová, Jana; Price, Elliott J.

Activation of the aryl hydrocarbon receptor improves allergen-specific immunotherapy of murine allergic airway inflammation: a novel adjuvant option?

Heine, Sonja; Alessandrini, Francesca; Grosch, Johannes; Graß, Carina; Heldner, Alexander; Schnautz, Benjamin; Grosch, Johanna; Buters, Jeroen; Slusarenko, Benjamin O.; Krappmann, Daniel; Fallarino, Francesca; Ohnmacht, Caspar; Schmidt-Weber, Carsten B.; Blank, Simon

Interactors and effects of overexpressing YlxR/RnpM, a conserved RNA binding protein in cyanobacteria

Hemm, Luisa; Miucci, Anna; Kraus, Alexander; Riediger, Matthias; Tholen, Stefan; Abdelaziz, Nouha; Georg, Jens; Schilling, Oliver; Hess, Wolfgang R

Association of a Specific OsCULLIN3c Haplotype with Salt Stress Responses in Local Thai Rice

Herwibawa, Bagus; Lekklar, Chakkree; Chadchawan, Supachitra; Buaboocha, Teerapong

The role of the 5’ sensing function of ribonuclease E in cyanobacteria

Hoffmann, Ute A.; Lichtenberg, Elisabeth; Rogh, Said N.; Bilger, Raphael; Reimann, Viktoria; Heyl, Florian; Backofen, Rolf; Steglich, Claudia; Hess, Wolfgang R.; Wilde, Annegret

A reproducible workflow for assembling the mitochondrial genome of Acheta domesticus (Orthoptera: Gryllidae)

Homchan, Somjit; Kutanan, Wibhu; Gupta, Yash Munnalal

Evaluation of novel pyridoxal isonicotinoyl hydrazone (PIH) derivatives as potential anti-tuberculosis agents: An in silico investigation

Hossain, Md. Shamim; Al Abbad, Sanaa S.; Alsunaidi, Zainab H. A.; Rahman, Shofiur; Alodhayb, Abdullah N.; Hossain, Md. Mainul; Poirier, Raymond A.; Uddin, Kabir M.

Astrocytes originated from neural stem cells drive the regenerative remodeling of pathologic CSPGs in spinal cord injury

Hosseini, Seyed Mojtaba; Nemati, Shiva; Karimi-Abdolrezaee, Soheila

Whole genome discovery of regulatory genes responsible for the response of chicken to heat stress

Hosseinzadeh, Sevda; Hasanpur, Karim

Rs1347093 regulates microRNA-216/-217 expression and is associated with pancreatic cancer risk

Huang, Hsin-Hung; Shiu, Tzu-Yue; Chan, De-Chuan; Chang, Chao-Feng; Lin, Hsuan-Hwai; Lin, Jung-Chun; Chen, Peng-Jen; Shih, Yu-Lueng; Chang, Wei-Kuo; Hsieh, Tsai-Yuan

Characterisation of prophages inClostridium clostridioforme: an understudied component of the intestinal microbiome

Humphrey, Suzanne; Marouli, Angeliki; Thümmler, Katja; Mullin, Margaret; Wall, Daniel

Genomic characterization of prophage elements in Clostridium clostridioforme: an understudied component of the intestinal microbiome

Humphrey, Suzanne; Marouli, Angeliki; Thümmler, Katja; Mullin, Margaret; Pritchard, Leighton; Wall, Daniel M.

Reduction of APOE accounts for neurobehavioral deficits in fetal alcohol spectrum disorders

Hwang, Hye M.; Yamashita, Satoshi; Matsumoto, Yu; Ito, Mariko; Edwards, Alex; Sasaki, Junko; Dutta, Dipankar J.; Mohammad, Shahid; Yamashita, Chiho; Wetherill, Leah; Schwantes-An, Tae-Hwi; Abreu, Marco; Mahnke, Amanda H.; Mattson, Sarah N.; Foroud, Tatiana; Miranda, Rajesh C.; Chambers, Christina; Torii, Masaaki; Hashimoto-Torii, Kazue

Epigenetic modulation via the C-terminal tail of H2A.Z

Imre, László; Nánási, Péter; Benhamza, Ibtissem; Enyedi, Kata Nóra; Mocsár, Gábor; Bosire, Rosevalentine; Hegedüs, Éva; Niaki, Erfaneh Firouzi; Csóti, Ágota; Darula, Zsuzsanna; Csősz, Éva; Póliska, Szilárd; Scholtz, Beáta; Mező, Gábor; Bacsó, Zsolt; Timmers, H. T. Marc; Kusakabe, Masayuki; Balázs, Margit; Vámosi, György; Ausio, Juan; Cheung, Peter; Tóth, Katalin; Tremethick, David; Harata, Masahiko; Szabó, Gábor

Evolution of the CRISPR-Cas9 defence system in Mycoplasma gallisepticum following colonization of a novel bird host

Ipoutcha, Thomas; Tsarmpopoulos, Iason; Gourgues, Géraldine; Baby, Vincent; Dubos, Paul; Hill, Geoffrey E; Arfi, Yonathan; Lartigue, Carole; Thébault, Patricia; Bonneaud, Camille; Sirand-Pugnet, Pascal

A synthetic biology approach to assemble and reboot clinically relevant Pseudomonas aeruginosa tailed phages

Ipoutcha, Thomas; Racharaks, Ratanachat; Huttelmaier, Stefanie; Wilson, Cole J.; Ozer, Egon A.; Hartmann, Erica M.

Comparative Metagenomic Analysis of Bacteriophages and Prophages in Gnotobiotic Mouse Models

Ishola, Oluwaseun A.; Kublik, Susanne; Durai Raj, Abilash Chakravarthy; Ohnmacht, Caspar; Schulz, Stefanie; Foesel, Bärbel U.; Schloter, Michael

Human Metagenome Analysis with COVID-19 Infectious Disease

Jain, Kashish; Yadav, Ruchi

Salmonella phylogenomics

Jia, Chenghao; Zhou, Haiyang; Wang, Zining; Liu, Yuhao; Yue, Min

Physicochemical properties and biological efficacy of 30 DYRK2 Inhibitors for the treatment of prostate cancer

Joshi, Sravani; Srivastava, Ruby

Tracing the pathways and mechanisms involved in medicinal uses of flaxseed with computational methods and bioinformatics tools

Joshi, Sravani; Srivastava, Ruby

De novo transcriptomes of cave and surface isopod crustaceans: insights from 11 species across three suborders

Jovović, Lada; Bedek, Jana; Malard, Florian; Bilandžija, Helena

ATP-Gated P2X7-Ion Channel on Kidney-Resident Natural Killer T Cells and Memory T Cells in Intrarenal Inflammation

Junge, Marten; Liaukouskaya, Nastassia; Schwarz, Nicole; Pinto-Espinoza, Carolina; Schaffrath, Alessa Z.; Rissiek, Björn; Krebs, Christian F.; Rattay, Guido; Mittrücker, Hans-Willi; Tomas, Nicola M.; Nicke, Annette; Haag, Friedrich; Huber, Tobias B.; Meyer-Schwesinger, Catherine; Koch-Nolte, Friedrich; Wanner, Nicola

Integrated genomic and functional analysis of Streptomyces sp. UP1A-1 for bacterial wilt control and solanaceae yield increase

Kaari, Manigundan; Manikkam, Radhakrishnan; Joseph, Jerrine; Krishnan, Sakthivel; Annamalai, Kishore Kumar; Khan, Abujunaid; Rajput, Vinay; Dastager, Syed Gulam; Dharne, Mahesh S.; Umar, Md; Venugopal, Gopikrishnan; Alexander, Balamurugan

Comparative genomics of four lactic acid bacteria identified with Vitek MS (MALDI-TOF) and whole-genome sequencing

Kahraman-Ilıkkan, Özge

SORCS2 activity in pancreatic α-cells safeguards insulin granule formation and release from glucose-stressed β-cells

Kalnytska, Oleksandra; Qvist, Per; Kunz, Séverine; Conrad, Thomas; Willnow, Thomas E.; Schmidt, Vanessa

Identification of effector candidates in Bipolaris sorokiniana and their expression profile analysis during pathogen-wheat interactions

Kamajian, Mahla; Soorni, Aboozar; Mehrabi, Rahim

Mini-Multilocus Sequence Typing Scheme for the Global Population of Neisseria gonorrhoeae

Kandinov, Ilya; Shaskolskiy, Boris; Kravtsov, Dmitry; Filippova, Marina; Larkin, Anatoliy; Gryadunov, Dmitry

In Silico Prediction of Antibacterial Activity of Quinolone Derivatives

Karim, Tafsir; Almatarneh, Mansour H.; Rahman, Shofiur; Alodhayb, Abdullah N.; Albrithen, Hamad; Hossain, Md. Mainul; Kawsar, Sarkar M. A.; Poirier, Raymond A.; Uddin, Kabir M.

Sorafenib induces cachexia by impeding transcriptional signaling of the SET1/MLL complex on muscle-specific genes

Khan, Bushra; Lanzuolo, Chiara; Rosti, Valentina; Santarelli, Philina; Pich, Andreas; Kraft, Theresia; Amrute-Nayak, Mamta; Nayak, Arnab

Genetic characterization and clonal analysis of carbapenemase-producing Escherichia coli and Klebsiella pneumoniae from canine and human origins

Khine, Nwai Oo; Shah, Asad Ali; Chatsuwan, Tanittha; Yindee, Jitrapa; Supimon, Natthapong; Saenkankam, Imporn; Hampson, David John; Prapasarakul, Nuvee

Shotgun metagenomic insights into secondary metabolite biosynthetic gene clusters reveal taxonomic and functional profiles of microbiomes in natural farmland soil

Kifle, Bezayit Amare; Sime, Amsale Melkamu; Gemeda, Mesfin Tafesse; Woldesemayat, Adugna Abdi

Novel approaches to investigate the cellular effects of epigenome modifications

Köhler, Anja R.

Cytochrome P450 2J2 is required for the natural compound austocystin D to elicit cancer cell toxicity

Kojima, Yukiko; Fujieda, Saki; Zhou, Liya; Takikawa, Masahiro; Kuramochi, Kouji; Furuya, Toshiki; Mizumoto, Ayaka; Kagaya, Noritaka; Kawahara, Teppei; Shin-ya, Kazuo; Dan, Shingo; Tomida, Akihiro; Ishikawa, Fuyuki; Sadaie, Mahito

Enhancing the image analysis community in Galaxy

Kostrykin, Leonid; Woller, Tatiana; Kalaš, Matúš; Özdemir, Bugra; Buono, Rafael Andrade; Sun, Yi; Kumar, Anup; Goué, Nadia; Grüning, Björn; Serrano-Solano, Beatriz; Fouilloux, Anne

Robust Graph Pruning for Efficient Segmentation and Cluster Splitting of Cell Nuclei Using Deformable Shape Models

Kostrykin, Leonid; Rohr, Karl

Cyclic electron flow compensates loss of PGDH3 and concomitant stromal NADH reduction

Krämer, Moritz; Blanco, Nicolás E.; Penzler, Jan-Ferdinand; Davis, Geoffry A.; Brandt, Benjamin; Leister, Dario; Kunz, Hans-Henning

Method for the accurate quantification of non-coding rnas in minute quantities

Kristen, Marco; Helm, Mark

An integrated metaproteomics workflow for studying host-microbe dynamics in bronchoalveolar lavage samples applied to cystic fibrosis disease

Kruk, Monica E.; Mehta, Subina; Murray, Kevin; Higgins, LeeAnn; Do, Katherine; Johnson, James E.; Wagner, Reid; Wendt, Chris H.; O’Connor, John B.; Harris, J. Kirk; Laguna, Theresa A.; Jagtap, Pratik D.; Griffin, Timothy J.

Synaptopodin Regulates Denervation-Induced Plasticity at Hippocampal Mossy Fiber Synapses

Kruse, Pia; Brandes, Gudrun; Hemeling, Hanna; Huang, Zhong; Wrede, Christoph; Hegermann, Jan; Vlachos, Andreas; Lenz, Maximilian

Dataset of metagenomic profiles of human gut microbiome from frozen fecal samples sequenced using Illumina and ONT chemistries

Kumar, Gauraw; Bhadury, Punyasloke

Association of Reproductive Phenology with Air Temperature in Almond (Prunus dulcis [Mill.] D.A. Webb) Cultivars Under Northwestern Himalayan Conditions

Kumawat, Kishan Lal; Raina, Susheel Kumar; Kumar, Dinesh; Verma, Mahendra Kumar; Singh, Deshbeer; Mir, Javid Iqbal; Sultan, Sheikh M.; Sharma, Om Chand

Transcriptional profiling specifies the pathogen-specific human host response to infectious keratitis

Lapp, Thabo; Kammrath Betancor, Paola; Schlunck, Günther; Auw-Hädrich, Claudia; Maier, Philip; Lange, Clemens; Reinhard, Thomas; Wolf, Julian

Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy

Larivière, Delphine; Abueg, Linelle; Brajuka, Nadolina; Gallardo-Alba, Cristóbal; Grüning, Bjorn; Ko, Byung June; Ostrovsky, Alex; Palmada-Flores, Marc; Pickett, Brandon D.; Rabbani, Keon; Antunes, Agostinho; Balacco, Jennifer R.; Chaisson, Mark J. P.; Cheng, Haoyu; Collins, Joanna; Couture, Melanie; Denisova, Alexandra; Fedrigo, Olivier; Gallo, Guido Roberto; Giani, Alice Maria; Gooder, Grenville MacDonald; Horan, Kathleen; Jain, Nivesh; Johnson, Cassidy; Kim, Heebal; Lee, Chul; Marques-Bonet, Tomas; O’Toole, Brian; Rhie, Arang; Secomandi, Simona; Sozzoni, Marcella; Tilley, Tatiana; Uliano-Silva, Marcela; Beek, Marius; Williams, Robert W.; Waterhouse, Robert M.; Phillippy, Adam M.; Jarvis, Erich D.; Schatz, Michael C.; Nekrutenko, Anton; Formenti, Giulio

Dual targeting of MAPK and PI3K pathways unlocks redifferentiation of Braf-mutated thyroid cancer organoids

Lasolle, Hélène; Schiavo, Andrea; Tourneur, Adrien; Gillotay, Pierre; Fonseca, Bárbara; Ceolin, Lucieli; Monestier, Olivier; Aganahi, Benilda; Chomette, Laura; Kizys, Marina Malta Letro; Haenebalcke, Lieven; Pieters, Tim; Goossens, Steven; Haigh, Jody; Detours, Vincent; Maia, Ana Luiza Silva; Costagliola, Sabine; Romitti, Mírian

In Vivo Silencing of Regulatory Elements Using a Single AAV-CRISPRi Vector

Laurette, P.; Cao, C.; Ramanujam, D.; Schwaderer, M.; Lueneburg, T.; Kuss, S.; Weiss, L.; Dilshat, R.; Furlong, E.E.M.; Rezende, F.; Engelhardt, S.; Gilsbach, R.

Acute Hypoxia Does Not Alter Tumor Sensitivity to FLASH Radiation Therapy

Leavitt, Ron J.; Almeida, Aymeric; Grilj, Veljko; Montay-Gruel, Pierre; Godfroid, Céline; Petit, Benoit; Bailat, Claude; Limoli, Charles L.; Vozenin, Marie-Catherine

Transcriptomic and de novo proteomic analyses of organotypic entorhino-hippocampal tissue cultures reveal changes in metabolic and signaling regulators in TTX-induced synaptic plasticity

Lenz, Maximilian; Turko, Paul; Kruse, Pia; Eichler, Amelie; Chen, Zhuo Angel; Rappsilber, Juri; Vida, Imre; Vlachos, Andreas

tRNA regulation and amino acid usage bias reflect a coordinated metabolic adaptation in Plasmodium falciparum

Li, Qian; Vetter, Leonie; Veith, Ylva; Christ, Elena; Végvári, Ákos; Sahin, Cagla; Ribacke, Ulf; Wahlgren, Mats; Ankarklev, Johan; Larsson, Ola; Chun-Leung Chan, Sherwin

Characterization of the angiomodulatory effects of Interleukin 11 cis- and trans-signaling in the retina

Liang, Paula; Ness, Jan; Rapp, Julian; Boneva, Stefaniya; Schwämmle, Melanie; Jung, Malte; Schlunck, Günther; Agostini, Hansjürgen; Bucher, Felicitas

PICKLE-mediated nucleosome condensing drives H3K27me3 spreading for the inheritance of Polycomb memory during differentiation

Liang, Zhenwei; Zhu, Tao; Yu, Yaoguang; Wu, Caihong; Huang, Yisui; Hao, Yuanhao; Song, Xin; Fu, Wei; Yuan, Liangbing; Cui, Yuhai; Huang, Shangzhi; Li, Chenlong

Characteristics and phylogenetic implications of the mitochondrial genome of a rare species, Libellula melli

Lin, Binquan; Chen, Hao; Li, Jiayu; Liao, Jian

Characterization and habitat adaptation of Tetragenococcus halophilus and Debaryomyces hansenii from a lupine seasoning sauce fermentation

Link, Tobias

Epigenomic and transcriptomic persistence of heat stress memory in strawberry (Fragaria vesca)

López, María-Estefanía; Denoyes, Béatrice; Bucher, Etienne

Partial hepatectomy accelerates colorectal metastasis by priming an inflammatory premetastatic niche in the liver

Luenstedt, Jost; Hoping, Fabian; Feuerstein, Reinhild; Mauerer, Bernhard; Berlin, Christopher; Rapp, Julian; Marx, Lisa; Reichardt, Wilfried; Elverfeldt, Dominik; Ruess, Dietrich Alexander; Plundrich, Dorothea; Laessle, Claudia; Jud, Andreas; Neeff, Hannes Philipp; Holzner, Philipp Anton; Fichtner-Feigl, Stefan; Kesselring, Rebecca

Mechanisms of Mycophenolic Acid-Induced Gastrointestinal Toxicity and Potential Therapeutic Interventions in Primary Mouse Colonic Organoids

Mack-Bowles, Brenan

Complete genome sequence of Pseudomonas aeruginosa phage Knedl

Maffei, Enea; Manner, Christina; Jenal, Urs; Harms, Alexander

Exploring the biotechnological potential of novel soil-derived Klebsiella sp. and Chryseobacterium sp. strains using phytate as sole carbon source

Maldonado-Pava, Julieth; Tapia-Perdomo, Valentina; Estupinan-Cardenas, Liliana; Puentes-Cala, Edinson; Castillo-Villamizar, Genis Andrés

DORQ-seq: high-throughput quantification of femtomol tRNA pools by combination of cDNA hybridization and Deep sequencing

Marco, Kristen; Marc, Lander; Lea-Marie, Kilz; Lukas, Gleue; Marko, Jörg; Damien, Bregeon; Djemel, Hamdane; Virginie, Marchand; Yuri, Motorin; Kristina, Friedland; Mark, Helm

Pertussis Outbreak During 2023 in Gipuzkoa, North Spain

Marimón, José María; Montes, Milagrosa; Vizuete, Nahikari; Alvarez Guerrico, Lorea; Aginagalde, Adrian Hugo; Mir-Cros, Alba; González-López, Juan José; Vicente, Diego

FAIRsoft-a practical implementation of FAIR principles for research software

Martín Del Pico, Eva; Gelpí, Josep Lluís; Capella-Gutierrez, Salvador

Unravelling the main genomic features of Mycoplasma equirhinis

Martineau, Matthieu; Ambroset, Chloé; Lefebvre, Stéphanie; Kokabi, Éléna; Léon, Albertine; Tardy, Florence

Ehmt2 Loss-of-Function Alterations Cause a Kleefstra-Like Syndrome

Martinez-Delgado, Beatriz; Lopez-Martin, Estrella; Kerkhof, Jennifer; Baladron, Beatriz; Mielu, Lidia M.; Sanchez-Ponce, Diana; Bada-Navarro, Ariadna; Herrero-Matesanz, Marina; Lopez-Jimenez, Lidia; Rzasa, Jessica; Rots, Dmitrijs; Fernandez, Marta; Miguel, Esther Hernandez-San; Gomez-Mariano, Gema; Marin-Reina, Purificacion; Cazorla-Calleja, Rosario; Alonso, Javier; Kleefstra, Tjitske; Posada, Manuel; Bermejo-Sanchez, Eva; Sadikovic, Bekim; Barrero, Maria J.

Laminin-α2 chain deficiency in skeletal muscle causes dysregulation of multiple cellular mechanisms

Martins, Susana G.; Ribeiro, Vanessa; Melo, Catarina; Paulino-Cavaco, Cláudia; Antonini, Dario; Naidu, Sharadha Dayalan; Murtinheira, Fernanda; Fonseca, Inês; Saget, Bérénice; Pita, Mafalda; Fernandes, Diogo R.; Santos, Pedro Gameiro dos; Rodrigues, Gabriela; Zilhão, Rita; Herrera, Federico; Dinkova-Kostova, Albena T.; Carlos, Ana Rita; Thorsteinsdóttir, Sólveig

miRNA-mediated gene silencing in Drosophila larval development involves GW182-dependent and independent mechanisms

Matsuura-Suzuki, Eriko; Kiyokawa, Kaori; Iwasaki, Shintaro; Tomari, Yukihide

Predicting the Identities of su(met-2) and met-3 in Neurospora crassa by Genome Resequencing

McCluskey, Kevin; Brown, Daren; Bredeweg, Erin; Baker, Scott

Genetic influence on vascular smooth muscle cell apoptosis

McVey, David G.; Andreadi, Catherine; Gong, Peng; Stanczyk, Paulina J.; Solomon, Charles U.; Turner, Lenka; Yan, Liu; Chen, Runji; Cao, Junjun; Nelson, Christopher P.; Thompson, John R.; Yu, Haojie; Webb, Tom R.; Samani, Nilesh J.; Ye, Shu

Exploring the anticancer and antibacterial potential of naphthoquinone derivatives: a comprehensive computational investigation

Meem, Mehnaz Hossain; Yusuf, Sumaiya Binte; Al Abbad, Sanaa S.; Rahman, Shofiur; Al-Gawati, Mahmoud; Albrithen, Hamad; Alodhayb, Abdullah N.; Uddin, Kabir M.

Rat1 promotes premature transcription termination at R-loops

Mérida-Cerro, José Antonio; Maraver-Cárdenas, Pablo; Rondón, Ana G; Aguilera, Andrés

Characterization of the major autolysin (AtlC) of Staphylococcus carnosus

Merz, Maximilian; Schiffer, Carolin J.; Klingl, Andreas; Ehrmann, Matthias A.

Cell death induced by Lepeophtheirus salmonis labial gland protein 3 in salmonid fish leukocytes: A mechanism for disabling host immune responses

Midtbø, Helena Marie Doherty; Borchel, Andreas; Morton, H. Craig; Paley, Richard; Monaghan, Sean; Haugland, Gyri Teien; Øvergård, Aina-Cathrine

Transcription Factor 23 is an Essential Determinant of Murine Term Parturition

Minisy, Fatma M.; Shawki, Hossam H.; Fujita, Tsubasa; Moustafa, Ahmed M.; Sener, Rumeysa; Nishio, Youske; Shimada, Issei S.; Saitoh, Shinji; Sugiura-Ogasawara, Mayumi; Oishi, Hisashi

Assessment and Partial Characterization of Candidate Genes in Dihydrochalcone and Arbutin Biosynthesis in an Apple–Pear Hybrid by De Novo Transcriptome Assembly

Miranda, Simón; Koop, Marion; Angeli, Andrea; Lagrèze, Jorge; Malnoy, Mickael; Martens, Stefan

Anotación genómica de genes expresados en la biosíntesis de compuestos fenólicos en pitahaya (Hylocereus spp.) expuesta a condiciones de estrés

Molina Valencia, Erick Santiago

Harnessing Lignocellulolytic and Electrogenic Potential: Insights from Shewanella oneidensis MR-1 and Cellulomonas Strains on Lignocellulosic Biomass

Molla, Animut Assefa; Mishyn, Vladyslav; Bernet, Nicolas; Bouchez, Théodore; Besaury, Ludovic; Abdellaoui, Sofiene

Viral diversity in wild rodents in the regions of Canaã de Carajás and Curionopólis, State of Pará, Brazil

Monteiro, Adriana Freitas Moraes; Silva, Fábio Silva; Cruz, Ana Cecília Ribeiro; Silva, Sandro Patroca; Queiroz, Alice Louize Nunes; Casseb, Livia Medeiros Neves; Martins, Livia Carício; Medeiros, Daniele Barbosa de Almeida

Impact of vaccination with the Anaplasma phagocytophilum MSP4 chimeric antigen on gene expression in the rabbit host

Moraga-Fernández, Alberto; Sousa-Blanco, María; Marques, João Pedro; Queirós, João; Fernández-Melgar, Rubén; García-Álvarez, Olga; Alves, Paulo C.; Contreras, Marinela

Ionizing radiation responses appear incidental to desiccation responses in the bdelloid rotifer Adineta vaga

Moris, Victoria C.; Bruneau, Lucie; Berthe, Jérémy; Heuskin, Anne-Catherine; Penninckx, Sébastien; Ritter, Sylvia; Weber, Uli; Durante, Marco; Danchin, Etienne G. J.; Hespeels, Boris; Doninck, Karine Van

Genome-wide analysis of PvMADS in common bean and functional characterization of PvMADS31 in Arabidopsis thaliana as a player in abiotic stress responses

Mostafa, Karam; Yerlikaya, Bayram Ali; Abdulla, Mohamed Farah; Aydin, Abdullah; Yerlikaya, Seher; Kavas, Musa

CheRRI—Accurate classification of the biological relevance of putative RNA–RNA interaction sites

Müller, Teresa; Mautner, Stefan; Videm, Pavankumar; Eggenhofer, Florian; Raden, Martin; Backofen, Rolf

Immunoinformatics Design of a Multiepitope Vaccine (MEV) Targeting Streptococcus mutans: A Novel Computational Approach

Naorem, Romen Singh; Pangabam, Bandana Devi; Bora, Sudipta Sankar; Fekete, Csaba; Teli, Anju Barhai

BMS345541 is predicted as a repurposed drug for the treatment of TMZ-resistant Glioblastoma using target gene expression and virtual drug screening

Nayak, Rojalin; Mallick, Bibekanand

Use of Gain-of-Function Screening to Identify miRNAs Involved in Paclitaxel Resistance in Triple-Negative Breast Cancer

Nemours, Stéphane; Solé, Carla; Goicoechea, Ibai; Armesto, María; Arestin, María; Urruticoechea, Ander; Rezola, Marta; López, Isabel Álvarez; Schaapveld, Roel; Schultz, Iman; Zhang, Lei; Lawrie, Charles H

Development and Validation of Nanopore Sequencing Targeting the L1 Gene for High-Risk HPV Genotyping /

Nguionza, Anne-Emmanuelle

Genomic characterization and identification of candidate genes for putative podophyllotoxin biosynthesis pathway in Penicillium herquei HGN12.1C

Nguyen, Duong Huy; Tran, Quang Ho; Le, Lam Tung; Nguyen, Ha Hong Thi; Tran, Hoa Thi; Do, Thuy Phuong; Ho, Anh Ngoc; Tran, Quang Hong; Thu, Hien Thi Nguyen; Bui, Van Ngoc; Chu, Hoang Ha; Pham, Ngoc Bich

The contribution of BvgR, RisA, and RisS to global gene regulation, intracellular cyclic-di-GMP levels, motility, and biofilm formation in Bordetella bronchiseptica

Nicholson, Tracy L.; Waack, Ursula; Fleming, Damarius S.; Chen, Qing; Miller, Laura C.; Merkel, Tod J.; Stibitz, Scott

Benchmarking Bioinformatics Workflows using Bibliographic Networks : Exploring Co-Usage Information in Software Co-Citation Graphs

Nilsson, Alma

Amazonian Bacteria from River Sediments as a Biocontrol Solution against Ralstonia solanacearum

Bioinformatic challenge on prostate cancer and urinary microbiome. | EBSCOhost

Candidatus Methanosphaera massiliense sp. nov., a methanogenic archaeal species found in a human fecal sample and prevalent in pigs and red kangaroos | Microbiology Spectrum

CheRRI—Accurate classification of the biological relevance of putative RNA–RNA interaction sites

Draft genome sequence of Streptomyces poriferorum RTGN2, a bacterial endophyte isolated from Alnus glutinosa root nodules | Microbiology Resource Announcements

The Effect of Methamphetamine on NeuroHIV, Alzheimer’s Disease, and Alzheimer’s Disease Related Dementias - ProQuest

Effect of Anti‐S100A4 Monoclonal Antibody Treatment on Experimental Skin Fibrosis and Systemic Sclerosis–Specific Transcriptional Signatures in Human Skin - Trinh‐Minh - 2024 - Arthritis & Rheumatology - Wiley Online Library

Insights Into the Evolution of Chromatin Architecture Generated by Inversion Breakpoints in Drosophila pseudoobscura - ProQuest

Nutrients | Free Full-Text | A 14-Day Double-Blind, Randomized, Controlled Crossover Intervention Study with Anti-Bacterial Benzyl Isothiocyanate from Nasturtium (Tropaeolum majus) on Human Gut Microbiome and Host Defense

A practical guide to bioimaging research data management in core facilities - Schmidt - 2024 - Journal of Microscopy - Wiley Online Library

Repositório Institucional da UnB: Estudo sobre bactérias degradadoras de polietileno : descrição de uma potencial nova espécie bacteriana e caracterização de uma enzima peroxirredoxina

Whole-genome long-read sequencing to unveil Enterococcus antimicrobial resistance in dairy cattle farms exposed a widespread occurrence of Enterococcus lactis | Microbiology Spectrum

Structure and function of the ribosomal intergenic DNA

Nógell, Adam

Transcriptome dataset of gall-rust infected Sengon (Falcataria falcata) seedlings using long-read PCR-cDNA sequencing

Nugroho, Aditya; Siregar, Iskandar Zulkarnaen; Matra, Deden Derajat; Siregar, Ulfah Juniarti

Metagenomic Study of Bacteria Diversity and Functional Profile in Bulk and Rhizosphere Soils of Fusarium-Wilt Infected Plantain (Musa paradisiaca)

Nwankwo, C. C.; Ezeonuegbu, B. A.; Oranusi, E. C.

Building Domain-Specific Machine Learning Workflows: A Conceptual Framework for the State of the Practice

Oakes, Bentley James; Famelis, Michalis; Sahraoui, Houari

Whole-genome long-read sequencing to unveil Enterococcus antimicrobial resistance in dairy cattle farms exposed a widespread occurrence of Enterococcus lactis

Ocejo, Medelin; Mugica, Maitane; Oporto, Beatriz; Lavín, José Luis; Hurtado, Ana

In silico studies of benzothiazole derivatives as potential inhibitors of Anopheles funestus and Anopheles gambiae trehalase

Ogunnupebi, Temitope A.; Oduselu, Gbolahan O.; Elebiju, Oluwadunni F.; Ajani, Olayinka O.; Adebiyi, Ezekiel

Integrated analysis of RNA-seq datasets reveals novel targets and regulators of COVID-19 severity

Oliveira, Thais Teixeira; Freitas, Júlia Firme; Medeiros, Viviane Priscila Barros de; Xavier, Thiago Jesus da Silva; Agnez-Lima, Lucymara Fassarella

The Diversity of Seed-Borne Fungi Associated with Soybean Grown in Southern Poland

Olszak-Przybyś, Hanna; Korbecka-Glinka, Grażyna

MOLECULAR CHARACTERIZATION OF PLASMIDS CARRYING AMPC Β-LACTAMASES (AMPCs) AND EXTENDED-SPECTRUM Β-LACTAMASE (ESBLs) GENES USING HYBRID GENOME ASSEMBLY ANALYSIS.

ORTEGA RAMÍREZ, JAZMÍN ALEJANDRA

A hybrid receptor binding protein enables phage F341 infection of Campylobacter by binding to flagella and lipooligosaccharides

Ostenfeld, Line Jensen; Sørensen, Anders Nørgaard; Neve, Horst; Vitt, Amira; Klumpp, Jochen; Sørensen, Martine Camilla Holst

Differences in activity and stability drive transposable element variation in tropical and temperate maize

Ou, Shujun; Scheben, Armin; Collins, Tyler; Qiu, Yinjie; Seetharam, Arun S.; Menard, Claire C.; Manchanda, Nancy; Gent, Jonathan I.; Schatz, Michael C.; Anderson, Sarah N.; Hufford, Matthew B.; Hirsch, Candice N.

Bacterial Communities, Pathogens, Resistomes, and Mobilomes Associated with a Wastewater Treatment Plant in Mexico: A Metagenomics Approach

Oyedara, Omotayo O.; Ruíz-Amaro, Carlos J.; Heredia, Norma; García, Santos

Genomic characterization of carbapenem and colistin-resistant Klebsiella pneumoniae isolates from humans and dogs

Pachanon, Ruttana; Khine, Nwai Oo; Phumthanakorn, Nathita; Wongsurawat, Thidathip; Niyomtham, Waree; Chatsuwan, Tanittha; Hampson, David J.; Prapasarakul, Nuvee

Antimicrobial Activity of Bacillus amyloliquefaciens BS4 against Gram-Negative Pathogenic Bacteria

Palacios-Rodriguez, Ana Paula; Espinoza-Culupú, Abraham; Durán, Yerson; Sánchez-Rojas, Tito

The complete mitochondrial DNA of the carnivorous sponge Lycopodina hypogea is putatively complemented by microDNAs

Paula, Thiago Silva de; Leite, Dora de Moura Barbosa; Lobo-Hajdu, Gisele; Vacelet, Jean; Thompson, Fabiano; Hajdu, Eduardo

Elucidating the impact of Y chromosome microdeletions and altered gene expression on male fertility in assisted reproduction

Pazoki, Nasrin; Salehi, Mitra; Angaji, Seyed Abdolhamid; Abdollahpour-Alitappeh, Meghdad

Carbon nanodots as photosensitizer in photodynamic inactivation of Rickettsia slovaca

Peresh, Yevheniy-Yuliy; Šoltys, Katarína; Kľúčár, Ľuboš; Beke, Gábor; Kováčová, Mária; Špitalský, Zdenko; Špitalská, Eva

Deficiency of the histone lysine demethylase KDM5B causes autism-like phenotypes via increased NMDAR signalling

Pérez-Sisqués, Leticia; Bhatt, Shail; Caruso, Angela; Ahmed, Mohi; Gileadi, Talia; Spring, Shoshana; Hendy, Eleanor; Taylor-Papadimitriou, Joyce; Cash, Diana; Clifton, Nicholas; Ellegood, Jacob; Andreae, Laura; Lerch, Jason; Scattoni, Maria Luisa; Giese, Peter; Fernandes, Cathy; Basson, Albert

The Intellectual Disability Risk Gene Kdm5b Regulates Long-Term Memory Consolidation in the Hippocampus

Pérez-Sisqués, Leticia; Bhatt, Shail U.; Matuleviciute, Rugile; Gileadi, Talia E.; Kramar, Eniko; Graham, Andrew; Garcia, Franklin G.; Keiser, Ashley; Matheos, Dina P.; Cain, James A.; Pittman, Alan M.; Andreae, Laura C.; Fernandes, Cathy; Wood, Marcelo A.; Giese, K. Peter; Basson, M. Albert

A 14-Day Double-Blind, Randomized, Controlled Crossover Intervention Study with Anti-Bacterial Benzyl Isothiocyanate from Nasturtium (Tropaeolum majus) on Human Gut Microbiome and Host Defense

Pfäffle, Simon P.; Herz, Corinna; Brombacher, Eva; Proietti, Michele; Gigl, Michael; Hofstetter, Christoph K.; Mittermeier-Kleßinger, Verena K.; Claßen, Sophie; Tran, Hoai T. T.; Dawid, Corinna; Kreutz, Clemens; Günther, Stefan; Lamy, Evelyn

Epigenetic regulation by polycomb repressive complex 1 promotes cerebral cavernous malformations

Pham, Van-Cuong; Rödel, Claudia Jasmin; Valentino, Mariaelena; Malinverno, Matteo; Paolini, Alessio; Münch, Juliane; Pasquier, Candice; Onyeogaziri, Favour C; Lazovic, Bojana; Girard, Romuald; Koskimäki, Janne; Hußmann, Melina; Keith, Benjamin; Jachimowicz, Daniel; Kohl, Franziska; Hagelkruys, Astrid; Penninger, Josef M; Schulte-Merker, Stefan; Awad, Issam A; Hicks, Ryan; Magnusson, Peetra U; Faurobert, Eva; Pagani, Massimiliano; Abdelilah-Seyfried, Salim

Complete genome sequence of Escherichia coli MP1

Pick, Kat; Stothard, Paul; Raivio, Tracy L.

Meiotic maturation failure in primary ovarian insufficiency: insights from a bovine model

Pietroforte, Sara; Dey, Pritha; Ibáñez, Elena; Luciano, Alberto Maria; Lodde, Valentina; Franciosi, Federica; Popovic, Mina; Vassena, Rita; Zambelli, Filippo

Candidatus Methanosphaera massiliense sp. nov., a methanogenic archaeal species found in a human fecal sample and prevalent in pigs and red kangaroos

Pilliol, Virginie; Morsli, Madjid; Terlier, Laureline; Hassani, Yasmine; Malat, Ihab; Guindo, Cheick Oumar; Davoust, Bernard; Lamglait, Benjamin; Drancourt, Michel; Aboudharam, Gérard; Grine, Ghiles; Terrer, Elodie

Methanobrevibacter massiliense and Pyramidobacter piscolens Co-Culture Illustrates Transkingdom Symbiosis

Pilliol, Virginie; Beye, Mamadou; Terlier, Laureline; Balmelle, Julien; Kacel, Idir; Lan, Romain; Aboudharam, Gérard; Grine, Ghiles; Terrer, Elodie

Rescue of Mycobacterium bovis DNA Obtained from Cultured Samples during Official Surveillance of Animal TB: Key Steps for Robust Whole Genome Sequence Data Generation

Pinto, Daniela; Themudo, Gonçalo; Pereira, André C.; Botelho, Ana; Cunha, Mónica V.

Personalized bacteriophage therapy outcomes for 100 consecutive cases: a multicentre, multinational, retrospective observational study

Pirnay, Jean-Paul; Djebara, Sarah; Steurs, Griet; Griselain, Johann; Cochez, Christel; De Soir, Steven; Glonti, Tea; Spiessens, An; Vanden Berghe, Emily; Green, Sabrina; Wagemans, Jeroen; Lood, Cédric; Schrevens, Eddie; Chanishvili, Nina; Kutateladze, Mzia; Jode, Mathieu; Ceyssens, Pieter-Jan; Draye, Jean-Pierre; Verbeken, Gilbert; De Vos, Daniel; Rose, Thomas; Onsea, Jolien; Van Nieuwenhuyse, Brieuc; Soentjens, Patrick; Lavigne, Rob; Merabishvili, Maya

Oviduct epithelial spheroids during in vitro culture of bovine embryos mitigate oxidative stress, improve blastocyst quality and change the embryonic transcriptome

Pranomphon, Thanya; López-Valiñas, Álvaro; Almiñana, Carmen; Mahé, Coline; Brair, Viviane Lopes; Parnpai, Rangsun; Mermillod, Pascal; Bauersachs, Stefan; Saint-Dizier, Marie

Prostaglandin E2-EP2/EP4 signaling induces immunosuppression in human cancer by impairing bioenergetics and ribosome biogenesis in immune cells

Punyawatthananukool, Siwakorn; Matsuura, Ryuma; Wongchang, Thamrong; Katsurada, Nao; Tsuruyama, Tatsuaki; Tajima, Masaki; Enomoto, Yutaka; Kitamura, Toshio; Kawashima, Masahiro; Toi, Masakazu; Yamanoi, Koji; Hamanishi, Junzo; Hisamori, Shigeo; Obama, Kazutaka; Charoensawan, Varodom; Thumkeo, Dean; Narumiya, Shuh

Whole genome sequencing reveals complex resistome features of Klebsiella pneumoniae isolated from patients at major hospitals in Trinidad, West Indies

Pustam, Aarti; Jayaraman, Jayaraj; Ramsubhag, Adesh

The altered TBI fecal microbiome is stable and functionally distinct

Pyles, Richard B.; Miller, Aaron L.; Urban, Randall J.; Sheffield-Moore, Melinda; Wright, Traver J.; Maxwell, Carrie A.; Randolph, Kathleen M.; Danesi, Christopher P.; McGovern, Kristen A.; Vargas, Jayson; Armstrong, Peyton; Kreber, Lisa; Cumpa, Giuliana; Randall, Kevin; Morrison, Melissa; Masel, Brent E.

Intra-host genomic diversity and integration landscape of human tissue-resident DNA virome

Pyöriä, Lari; Pratas, Diogo; Toppinen, Mari; Simmonds, Peter; Hedman, Klaus; Sajantila, Antti; Perdomo, Maria F

SmCYP71D373 of Salvia miltiorrhiza catalyzes the methyl oxidation reaction of tanshinone IIA-19 position

Qiu, Xiaoping; Zhang, Yi; Luo, Yinggang; Zhang, Yongmei

Surveillance and detection of multidrug resistant bacterial strains and blaOXA genes in aquatic environments in Ås and Nordre Follo municipalities

Rabbås, Hanne Brænd

Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses

Rahman, Nadim; O'Cathail, Colman; Zyoud, Ahmad; Sokolov, Alexey; Oude Munnink, Bas; Grüning, Björn; Cummins, Carla; Amid, Clara; Nieuwenhuijse, David F.; Visontai, Dávid; Yuan, David Yu; Gupta, Dipayan; Prasad, Divyae K.; Gulyás, Gábor Máté; Rinck, Gabriele; McKinnon, Jasmine; Rajan, Jeena; Knaggs, Jeff; Skiby, Jeffrey Edward; Stéger, József; Szarvas, Judit; Gueye, Khadim; Papp, Krisztián; Hoek, Maarten; Kumar, Manish; Ventouratou, Marianna A.; Bouquieaux, Marie-Catherine; Koliba, Martin; Mansurova, Milena; Haseeb, Muhammad; Worp, Nathalie; Harrison, Peter W.; Leinonen, Rasko; Thorne, Ross; Selvakumar, Sandeep; Hunt, Sarah; Venkataraman, Sundar; Jayathilaka, Suran; Cezard, Timothée; Maier, Wolfgang; Waheed, Zahra; Iqbal, Zamin; Aarestrup, Frank Møller; Csabai, Istvan; Koopmans, Marion; Burdett, Tony; Cochrane, Guy

The mobilome of Staphylococcus aureus from wild ungulates reveals epidemiological links at the animal-human interface

Ramos, Beatriz; Cunha, Mónica V.

Oncostatin M Reduces Pathological Neovascularization in the Retina Through Müller Cell Activation

Rapp, Julian; Hospach, Alban; Liang, Paula; Schwämmle, Melanie; Renz, Lisa; Agostini, Hansjürgen; Schlunck, Günther; Bucher, Felicitas

Generalized open-source workflows for atomistic molecular dynamics simulations of viral helicases

Raubenolt, Bryan; Blankenberg, Daniel

PCSK9-antibodies fail to block PCSK9-induced inflammation in macrophages and cannot recapitulate protective effects of PCSK9-deficiency in experimental myocardial infarction

Rauterberg, Simon; Härdtner, Carmen; Hein, Jennifer; Schrepf, Paola; Peyronnet, Remi; Koentges, Christoph; Vico, Tamara A; Ehlert, Carolin; Dufner, Bianca; Lindner, Diana; Zur Mühlen, Constantin; Wolf, Dennis; Westermann, Dirk; Hilgendorf, Ingo; Ehr, Alexander

The multifaceted role of mitochondria in cardiac function: insights and approaches

Ravindran, Sriram; Rau, Christoph D.

Identification and quantification of transposable element transcripts using Long-Read RNA-seq in Drosophila germline tissues

Rebollo, Rita; Gerenton, Pierre; Cumunel, Eric; Mary, Arnaud; Sabot, François; Burlet, Nelly; Gillet, Benjamin; Hughes, Sandrine; S. Oliveira, Daniel; Goubert, Clément; Fablet, Marie; Vieira, Cristina; Lacroix, Vincent

Der Einfluss von Vitamin D auf die Genexpression aktivierter und nicht aktivierter natürlicher Killerzellen : Transkriptomanalyse mittels RNA-Sequenzierung

Reichenbach, Franziska Julia

Genome sequence of a European Diplocarpon coronariae strain and in silico structure of the mating-type locus

Richter, Sophie; Kind, Sabine; Oberhänsli, Thomas Wolfgang; Schneider, Michael; Nenasheva, Natalia; Hoff, Katharina; Keilwagen, Jens; Yeon, Il-Kweon; Philion, Vincent; Moriya, Shigeki; Flachowsky, Henryk; Patocchi, Andrea; Wöhner, Thomas Wolfgang

Genomic Evaluation of Multidrug-Resistant Extended-Spectrum β-Lactamase (ESBL)-Producing Escherichia coli from Irrigation Water and Fresh Produce in South Africa: A Cross-Sectional Analysis

Richter, Loandi; Duvenage, Stacey; Plessis, Erika Margarete; Msimango, Thabang; Dlangalala, Manana; Mathavha, Muneiwa Tshidino; Molelekoa, Tintswalo; Kgoale, Degracious Moloko; Korsten, Lise

Environmental regulation of male fertility is mediated through Arabidopsis transcription factors bHLH89, 91, and 10

Robson, Jordan K; Tidy, Alison C; Thomas, Stephen G; Wilson, Zoe A

Phenotypic variability in C. elegans natural isolates reveals plasticity of gene essentiality for mat-1 and cgh-1

Rodrigues Alves Barbosa, Victoria

MICROBIAL DIVERSITY OF CULICOIDES REEVESI FROM CHIHUAHUA, MEXICO: A METAGENOMIC ANALYSIS OF RRNA 16S

Rodríguez-Alarcón, Carlos Arturo; Garza Hernandez, Javier Alfonso; Gonzalez Peña, Rodolfo; Hidalgo Martínez, David Orlando; Huerta, Herón; Adame Gallegos, Jaime R.; De Luna Santillana, Erick J.; Laredo-Tiscareño, Stephanie Viridiana; García Rejón, Julian E.; Hernández-Triana, Luis M.

Genetic variability of New Caledonian Boeckella De Guerne & Richard, 1889 (Copepoda: Calanoida), with the description of a new species

Royaux, Coline; Charpin, Nicolas; Rabet, Nicolas

A Comparative Analysis of Mitogenomes in Species of the Tapinoma nigerrimum Complex and Other Species of the Genus Tapinoma (Formicidae, Dolichoderinae)

Ruiz-Mena, Areli; Mora, Pablo; Rico-Porras, José M; Kaufmann, Bernard; Seifert, Bernhard; Palomeque, Teresa; Lorite, Pedro

First Indonesian report of WGS-based MTBC L3 discovery

Rukminiati, Yuni; Mesak, Felix; Lolong, Dina; Sudarmono, Pratiwi

EXCRETE workflow enables deep proteomics of the microbial extracellular environment

Russo, David A.; Oliinyk, Denys; Pohnert, Georg; Meier, Florian; Zedler, Julie A. Z.

Carbapenem and colistin-resistant hypervirulent Klebsiella pneumoniae: An emerging threat transcending the egyptian food chain

Sabala, Rana Fahmi; Fukuda, Akira; Nakajima, Chie; Suzuki, Yasuhiko; Usui, Masaru; Elhadidy, Mohamed

On discovery of novel hub genes for ER+ and TN breast cancer types through RNA seq data analyses and classification models

Saddiqa, Alishbah; Zakir, Mahrukh; Sheikh, Mawara; Muneer, Zahid; Hassan, Arsalan; Ali, Iqra; Haq, Ihtisham Ul; Khan, Azmat Ali; Malik, Abdul; Siddiqi, Abdul Rauf

Detailing Early Shoot Growth Arrest in Kro-0 x BG-5 Hybrids of Arabidopsis thaliana

Sageman-Furnas, Katelyn; Duarte, Gustavo T; Laitinen, Roosa A E

hnRNP A1 dysfunction alters RNA splicing and drives neurodegeneration in multiple sclerosis (MS)

Salapa, Hannah E.; Thibault, Patricia A.; Libner, Cole D.; Ding, Yulian; Clarke, Joseph-Patrick W. E.; Denomy, Connor; Hutchinson, Catherine; Abidullah, Hashim M.; Austin Hammond, S.; Pastushok, Landon; Vizeacoumar, Frederick S.; Levin, Michael C.

Metaproteomics: Methods and Protocols

Salerno, Carlo

Heterorresistencia a colistina en aislados clínicos de Klebsiella pneumoniae con fenotipo de resistencia silvestre o productores de la carbapenemasa OXA-48

Sánchez-León, Irene

Insights on the comparative affinity of ribonucleic acids with plant-based beta carboline alkaloid, harmine: Spectroscopic, calorimetric and computational evaluation

Sarkar, Paromita; Gopi, Priyanka; Pandya, Prateek; Paria, Samaresh; Hossain, Maidul; Siddiqui, Manzer H.; Alamri, Saud; Bhadra, Kakali

JunB is required for CD8+ T cell responses to acute infections

Sarkar, Shukla; Taira, Naoyuki; Hsieh, Tsung-Han; Chien, Hsiao-Chiao; Hirota, Masato; Koizumi, Shin-ichi; Sasaki, Daiki; Tamai, Miho; Seto, Yu; Miyagi, Mio; Ishikawa, Hiroki

Genetic Evidence of Methicillin Resistant Staphylococcus Aureus Transmission between Pets and Their Owners

Sarker, Himangsu; Hassan, Jayedul; Rahman, A. K. M. Anisur; Korber, Darren R.; Alam, Md Mahbub

Algorithms for the global mapping of RNA-RNA interactomes

Schäfer, Richard A.

A practical guide and Galaxy workflow to avoid inter-plasmidic repeat collapse and false gene loss in Unicycler’s hybrid assemblies

Schäfer, Lea; Jehle, Johannes A.; Kleespies, Regina G.; Wennmann, Jörg T.

Misidentification of neural cell identity in liver-derived organoid systems

Schene, Imre F.; Ardisasmita, Arif I.; Fuchs, Sabine A.

A practical guide to bioimaging research data management in core facilities

Schmidt, Christian; Boissonnet, Tom; Dohle, Julia; Bernhardt, Karen; Ferrando-May, Elisa; Wernet, Tobias; Nitschke, Roland; Kunis, Susanne; Weidtkamp-Peters, Stefanie

EOMES establishes mesoderm and endoderm differentiation potential through SWI/SNF-mediated global enhancer remodeling

Schröder, Chiara M.; Zissel, Lea; Mersiowsky, Sophie-Luise; Tekman, Mehmet; Probst, Simone; Schüle, Katrin M.; Preissl, Sebastian; Schilling, Oliver; Timmers, H. Th Marc; Arnold, Sebastian J.

Viral hijacking of hnRNPH1 unveils a G-quadruplex-driven mechanism of stress control

Schult, Philipp; Kümmerer, Beate Mareike; Hafner, Markus; Paeschke, Katrin

ezSingleCell: an integrated one-stop single-cell and spatial omics analysis platform for bench scientists

Sethi, Raman; Ang, Kok Siong; Li, Mengwei; Long, Yahui; Ling, Jingjing; Chen, Jinmiao

StCDF1: A ‘jack of all trades’ clock output with a central role in regulating potato nitrate reduction activity

Shaikh, Maroof Ahmed; Ramírez-Gonzales, Lorena; Franco-Zorrilla, José M.; Steiner, Evyatar; Oortwijn, Marian; Bachem, Christian W. B.; Prat, Salomé

Combined Use of Phenotype-Based and Genome-Informed Approaches Identified a Unique Fusarium oxysporum f. sp. cubense Isolate in Hawaii

Shipman, Aaron; Tian, Miaoying

SCUBA implements a storage format-agnostic API for single-cell data access in R

Showers, William M; Desai, Jairav; Engel, Krysta L; Smith, Clayton; Jordan, Craig T; Gillen, Austin E

Fungani, a Blast-Based Program for Analyzing Average Nucleotide Identity (Ani) between Two Fungal Genomes, Enables Easy Fungal Species Delimitation

Silar, Philippe; Lalanne, Christophe

Comparative Transcriptomics of Fat Bodies between Symbiotic and Quasi-Aposymbiotic Adult Females of Blattella germanica with Emphasis on the Metabolic Integration with Its Endosymbiont Blattabacterium and Its Immune System

Silva, Francisco J.; Domínguez-Santos, Rebeca; Latorre, Amparo; García-Ferris, Carlos

Microbial carbohydrate active enzyme (CAZyme) genes and diversity from Menagesha Suba natural forest soils of Ethiopia as revealed by shotgun metagenomic sequencing

Sime, Amsale Melkamu; Kifle, Bezayit Amare; Woldesemayat, Adugna Abdi; Gemeda, Mesfin Tafesse

Biophysical and structural characterization of tetramethrin serum protein complex and its toxicological implications

Singh, Pratik; Gopi, Priyanka; Rani, Majji Sai Sudha; Singh, Shweta; Pandya, Prateek

Hemoglobin Targeting Potential of Aminocarb Pesticide: Investigation into Dynamics, Conformational Stability, and Energetics in Solvent Environment

Singh, Shweta; Gopi, Priyanka; Sharma, Palak; Rani, Majji Sai Sudha; Pandya, Prateek; Ali, Mohd Sajid

Expression of Transposable Elements throughout the Fasciola hepatica Trematode Life Cycle

Skalon, Elizaveta K.; Panyushev, Nick V.; Podgornaya, Olga I.; Smolyaninova, Anastasia R.; Solovyeva, Anna I.

Bioelectrochemical protein production valorizing NH3-rich pig manure-derived wastewater and CO2 from anaerobic digestion

Soggia, Gabriele; Goglio, Andrea; Cristiani, Pierangela; Luciani, Ivan; Clagnan, Elisa; Adani, Fabrizio

First Isolation of the Heteropathotype Shiga Toxin-Producing and Extra-Intestinal Pathogenic (STEC-ExPEC) E. coli O80:H2 in French Healthy Cattle: Genomic Characterization and Phylogenetic Position

Soleau, Nathan; Ganet, Sarah; Werlen, Stéphanie; Collignon, Lia; Cointe, Aurélie; Bonacorsi, Stéphane; Sergentet, Delphine

The effect of increasing plant species richness on soil and seed microbiome and its importance to stress response

Souza, De; Alves, Yuri Pinheiro

Mapping the presence of antibiotic resistant bacteria in water habitats in Gjesdal, Moss, and Våler municipality.

Søyland, Eirunn Øvregaard

Overview of transcriptome changes and phenomic profile of sanitized artichoke vis-à-vis non-sanitized plants

Spanò, R.; Petrozza, A.; Summerer, S.; Fortunato, S.; Pinto, M. C.; Cellini, F.; Mascia, T.

Spotlight on Secondary Metabolites Produced by an Early-Flowering Apulian Artichoke Ecotype Sanitized from Virus Infection by Meristem-Tip-Culture and Thermotherapy

Spanò, Roberta; Gena, Patrizia; Linsalata, Vito; Sini, Valeria; D’Antuono, Isabella; Cardinali, Angela; Cotugno, Pietro; Calamita, Giuseppe; Mascia, Tiziana

Neoadjuvant chemo- or chemo-radiation-therapy of pancreatic ductal adenocarcinoma differentially shift ECM composition, complement activation, energy metabolism and ribosomal proteins of the residual tumor mass

Stillger, Maren N.; Kurowski, Konrad; Bronsert, Peter; Brombacher, Eva; Kreutz, Clemens; Werner, Martin; Tang, Laura; Timme-Bronsert, Sylvia; Schilling, Oliver

Targeted RNAseq Revealed the Gene Expression Signature of Ferroptosis-Related Processes Associated with Disease Severity in Patients with Multiple Sclerosis

Stojkovic, Ljiljana; Jovanovic, Ivan; Dincic, Evica; Djordjevic, Ana; Kuveljic, Jovana; Djuric, Tamara; Stankovic, Aleksandra; Vojinovic, Slobodan; Zivkovic, Maja

Influenza A virus shedding and reinfection during the post-weaning period in swine: longitudinal study of two nurseries

Storms, Suzanna M; Leonardi-Cattolica, Antonio; Prezioso, Tara; Varga, Csaba; Wang, Leyi; Lowe, James

First detection of a cefiderocol-resistant and extensively drug-resistant Acinetobacter baumannii clinical isolate in Bulgaria

Strateva, Tanya; Peykov, Slavil

Genomic Insights into Vietnamese Extended-Spectrum β-Lactamase-9-Producing Extensively Drug-Resistant Pseudomonas aeruginosa Isolates Belonging to the High-Risk Clone ST357 Obtained from Bulgarian Intensive Care Unit Patients

Strateva, Tanya; Stratev, Alexander; Peykov, Slavil

SETD1A-dependent EME1 transcription drives PARPi sensitivity in HR deficient tumour cells

Sweatman, Ellie; Bayley, Rachel; Selemane, Richad; Higgs, Martin

Nanopore sequencing of IPNV vp2 gene in Peruvian Andean trout (Oncorhynchus mykiss) cultures

Tapia, Stephanie; Orellana, Joseph; Duran, Yerson; Rodriguez, Jose; Angulo, Derly; Dominguez-Mendoza, Luz; Grabiel, Sandra; Silva, Jose; Caballero, Romina; Zapata, Katherine; Gómez, Muriel; Tataje-Lavanda, Luis; Velazco, Rodolfo

Dark Mystery Solved: A Captive Black Leopard from South Africa is of Asian Descent

Tensen, Laura; Camacho, Gerrie

Small RNAs from mitochondrial genome recombination sites are incorporated into T. gondii mitoribosomes

Tetzlaff, Sabrina; Hillebrand, Arne; Drakoulis, Nikiforos; Gluhic, Zala; Maschmann, Sascha; Lyko, Peter; Wicke, Susann; Schmitz-Linneweber, Christian

Examining Transcriptomic Alterations in Rat Models of Intracerebral Hemorrhage and Severe Intracerebral Hemorrhage

Thangameeran, Shaik Ismail Mohammed; Tsai, Sheng-Tzung; Liew, Hock-Kean; Pang, Cheng-Yoong

Draft genome sequences of five Mycobacterium strains, isolated from Alnus glutinosa root nodules

Thompson, Ryan Michael; Fox, Edward M.; Montero-Calasanz, Maria del Carmen

Draft genome sequences of two Micromonospora strains isolated from the root nodules of Alnus glutinosa

Thompson, Ryan Michael; Fox, Edward M.; Montero-Calasanz, Maria del Carmen

Potential of enriched and stabilized anaerobic lignocellulolytic fungi coexisting with bacteria and methanogens for enhanced methane production from rice straw

Thongbunrod, Nitiya; Chaiprasert, Pawinee

Innate immune training restores pro-reparative myeloid functions to promote remyelination in the aged central nervous system

Tiwari, Vini; Prajapati, Bharat; Asare, Yaw; Damkou, Alkmini; Ji, Hao; Liu, Lu; Naser, Nawraa; Gouna, Garyfallia; Leszczyńska, Katarzyna B.; Mieczkowski, Jakub; Dichgans, Martin; Wang, Qing; Kawaguchi, Riki; Shi, Zechuan; Swarup, Vivek; Geschwind, Daniel H.; Prinz, Marco; Gokce, Ozgun; Simons, Mikael

Bioinformatic Prediction and High Throughput In Vivo Screening to Identify Cis-Regulatory Elements for the Development of Algal Synthetic Promoters

Torres-Tiji, Y; Sethuram, H; Gupta, A; McCauley, J; Dutra-Molino, J-V; Pathania, R; Saxton, L; Kang, K; Hillson, NJ; Mayfield, SP

Divergence within the Taxon ‘Candidatus Phytoplasma asteris’ Confirmed by Comparative Genome Analysis of Carrot Strains

Toth, Rafael; Ilic, Anna-Marie; Huettel, Bruno; Duduk, Bojan; Kube, Michael

Genomic Epidemiology of C2/H30Rx and C1-M27 Subclades of Escherichia coli ST131 Isolates from Clinical Blood Samples in Hungary

Tóth, Kinga; Damjanova, Ivelina; Laczkó, Levente; Buzgó, Lilla; Lesinszki, Virág; Ungvári, Erika; Jánvári, Laura; Hanczvikkel, Adrienn; Tóth, Ákos; Szabó, Dóra

Effect of Anti-S100A4 Monoclonal Antibody Treatment on Experimental Skin Fibrosis and Systemic Sclerosis–Specific Transcriptional Signatures in Human Skin

Trinh-Minh, Thuong; Györfi, Andrea Hermina; Tomcik, Michal; Tran-Manh, Cuong; Zhou, Xiang; Dickel, Nicholas; Tümerdem, Bilgesu Safak; Kreuter, Alexander; Burmann, Sven Niklas; Borchert, Signe Vedel; Hussain, Rizwan Iqbal; Hallén, Jonas; Klingelhöfer, Jörg; Kunz, Meik; Distler, Jörg H.W.

Proximity labeling as a tool to study transcription-replication interference

Ummethum, Henning

Identification of genetic determinants of bedaquiline resistance in Mycobacterium tuberculosis in Ural region, Russia

Umpeleva, Tatiana; Chetverikova, Elena; Belyaev, Danila; Eremeeva, Natalya; Boteva, Tatiana; Golubeva, Ludmila; Vakhrusheva, Diana; Vasilieva, Irina

Whole-genome sequencing and identification of antimicrobial peptide coding genes in parsley (Petroselinum crispum), an important culinary and medicinal Apiaceae species

Uncu, Ali Tevfik; Patat, Aysenur Soyturk; Uncu, Ayse Ozgur

Unravelling the complexity of bovine milk microbiome: insights into mastitis through enterotyping using full-length 16S-metabarcoding

Urrutia-Angulo, Leire; Ocejo, Medelin; Oporto, Beatriz; Aduriz, Gorka; Lavín, José Luís; Hurtado, Ana

Mesenchymal Osr1+ cells regulate embryonic lymphatic vessel formation

Vallecillo-García, Pedro; Kühnlein, Mira Nicola; Orgeur, Mickael; Hansmeier, Nils Rouven; Kotsaris, Georgios; Meisen, Zarah Gertrud; Timmermann, Bernd; Giesecke-Thiel, Claudia; Hägerling, René; Stricker, Sigmar

MAdLand computational resources for the Plant community

Varshney, D.; Hiltemann, S.; Petroll, R.; Fernandez-Pozo, N.; Grüning, B. A.; Rensing, S. A.

Mitogenome of a new Ramazzottius species (Tardigrada: Eutardigrada: Ramazzottiidae) discovered in rock pools along with its temperature and desiccation-related proteins repertoire

Vecchi, Matteo; Stec, Daniel

Pyridylpiperazine efflux pump inhibitor boosts in vivo antibiotic efficacy against K. pneumoniae

Vieira Da Cruz, Anais; Jiménez-Castellanos, Juan-Carlos; Börnsen, Clara; Van Maele, Laurye; Compagne, Nina; Pradel, Elizabeth; Müller, Reinke T; Meurillon, Virginie; Soulard, Daphnée; Piveteau, Catherine; Biela, Alexandre; Dumont, Julie; Leroux, Florence; Deprez, Benoit; Willand, Nicolas; Pos, Klaas M; Frangakis, Achilleas S; Hartkoorn, Ruben C; Flipo, Marion

Polymyxin Resistance in Salmonella: Exploring Mutations and Genetic Determinants of Non-Human Isolates

Vieira, Thais; Dos Santos, Carla Adriana; Jesus Bertani, Amanda Maria; Costa, Gisele Lozano; Campos, Karoline Rodrigues; Sacchi, Cláudio Tavares; Cunha, Marcos Paulo Vieira; Carvalho, Eneas; Costa, Alef Janguas; Paiva, Jacqueline Boldrin; Rubio, Marcela da Silva; Camargo, Carlos Henrique; Tiba-Casas, Monique Ribeiro

Multi-omics responses of barley seedlings to low and high linear energy transfer irradiation

Volkova, Polina; Prazyan, Alexandr; Podlutskii, Mikhail; Saburov, Vyacheslav; Kazakova, Elizaveta; Bitarishvili, Sofia; Duarte, Gustavo T.; Shesterikova, Ekaterina; Makarenko, Ekaterina; Lychenkova, Maria; Ben, Cécile; Gentzbittel, Laurent; Kazakov, Evgenii; Moiseev, Alexandr; Diuzhenko, Sergei; Korol, Marina; Bondarenko, Ekaterina

More May Not be Better: Enhanced Spacecraft Shielding May Exacerbate Cognitive Decrements by Increasing Pion Exposures during Deep Space Exploration

Vozenin, Marie-Catherine; Alaghband, Yasaman; Drayson, Olivia G. G.; Piaget, Filippo; Leavitt, Ron; Allen, Barrett D.; Doan, Ngoc-Lien; Rostomyan, Tigran; Stabilini, Alberto; Reggiani, Davide; Hajdas, Wojciech; Yukihara, Eduardo G.; Norbury, John W.; Bailat, Claude; Desorgher, Laurent; Baulch, Janet E.; Limoli, Charles L.

Application of CUT&Tag to the mapping and analysis of VEZF1 binding sites in K562 cells

Wang, Erxuan

The Genome of Arsenophonus sp. and Its Potential Contribution in the Corn Planthopper, Peregrinus maidis

Wang, Yu-Hui; Mikaelyan, Aram; Coates, Brad S.; Lorenzen, Marcé

Growth, Enzymatic, and Transcriptomic Analysis of xyr1 Deletion Reveals a Major Regulator of Plant Biomass-Degrading Enzymes in Trichoderma harzianum

Wang, Lunji; Zhao, Yishen; Chen, Siqiao; Wen, Xian; Anjago, Wilfred Mabeche; Tian, Tianchi; Chen, Yajuan; Zhang, Jinfeng; Deng, Sheng; Jiu, Min; Fu, Pengxiao; Zhou, Dongmei; Druzhinina, Irina S.; Wei, Lihui; Daly, Paul

Rab7 deficiency induces lysosome formation from recycling endosomes leading to an increased degradation of cell surface proteins

Wang, Guan; Xu, Peng; Yu, Kaikai; Guo, Shiny Shengzhen; Faessler, Reinhard

The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity

Waterhouse, Robert M.; Adam-Blondon, Anne-Françoise; Balech, Bachir; Barta, Endre; Ying Shi Chua, Physilia; Di Cola, Valeria; Heil, Katharina F.; Hughes, Graham M.; Jermiin, Lars S.; Kalaš, Matúš; Lanfear, Jerry; Pafilis, Evangelos; Palagi, Patricia M.; Papageorgiou, Aristotelis C.; Paupério, Joana; Psomopoulos, Fotis; Raes, Niels; Burgin, Josephine; Gabaldón, Toni

Modification of Seurat v4 for the Development of a Phase Assignment Tool Able to Distinguish between G2 and Mitotic Cells

Watson, Steven; Porter, Harry; Sudbery, Ian; Thompson, Ruth

Trusted Research Environments: Analysis of Characteristics and Data Availability

Weise, Martin; Rauber, Andreas

Distribution and genetic diversity of Bombyx mori nucleopolyhedrovirus in mass-reared silkworms in Thailand

Wennmann, Jörg T.; Senger, Sergei; Ruoff, Birgit; Jehle, Johannes A.; Suraporn, Siripuk

Genome-wide identification of CAMTA genes and their expression dependence on light and calcium signaling during seedling growth and development in mung bean

Wicaksono, Adhityo; Buaboocha, Teerapong

Anthropogenic contamination sources drive differences in antimicrobial-resistant Escherichia coli in three urban lakes

Wight, Jordan; Byrne, Alexander S.; Tahlan, Kapil; Lang, Andrew S.

Nuclear position and local acetyl-CoA production regulate chromatin state

Willnow, Philipp; Teleman, Aurelio A.

Molecular similarities between the genes for Trypanosoma cruzi microtubule-associated proteins, mammalian interferons, and TRIMs

Winkler, Martin A.; Pan, Alfred A.

Gene expression networks in endothelial cellsfrom failing human hearts

Wirth, Luisa; Erny, Elias; Krane, Markus; Lahm, Harald; Hein, Lutz; Gilsbach, Ralf; Lother, Achim

Planctoellipticum variicoloris gen. nov., sp. nov., a novel member of the family Planctomycetaceae isolated from wastewater of the aeration lagoon of a sugar processing plant in Northern Germany

Wurzbacher, Carmen E.; Haufschild, Tom; Hammer, Jonathan; Teeseling, Muriel C. F.; Kallscheuer, Nicolai; Jogler, Christian

Complete mitochondrial genomes of Bactrocera (Bulladacus) cinnabaria and B. (Bactrocera) propinqua (Diptera: Tephritidae) and their phylogenetic relationships with other congeners

Yong, Hoi-Sen; Song, Sze-Looi; Chua, Kah-Ooi; Liew, Yvonne Jing Mei; Chan, Kok-Gan; Lim, Phaik-Eem; Eamsobhana, Praphathip

Transcriptional regulation in the absence of inositol trisphosphate receptor calcium signaling

Young, Michael; Booth, David M; Smith, David; Tigano, Marco; Hajnóczky, György; Joseph, Suresh K

The complete mitochondrial genome of Phyllobrotica signata (Mannerheim, 1825) (Coleoptera: Chrysomelidae: Galerucinae): characterization and phylogenetic implications

Yu, Xiao-Xuan; Jin, Xu; Lin, Xiao-Ling; Liu, Li-Na; Nie, Rui-E

The USP12/46 deubiquitinases protect integrins from ESCRT-mediated lysosomal degradation

Yu, Kaikai; Wang, Guan M; Guo, Shiny Shengzhen; Bassermann, Florian; Fässler, Reinhard

Identification of the odorant binding proteins of Western Flower Thrips (Frankliniella occidentalis), characterization and binding analysis of FoccOBP3 with molecular modelling, molecular dynamics simulations and a confirmatory field trial

Zafar, Zeeshan; Wood, Martyn J.; Fatima, Sidra; Bhatti, Muhammad Faraz; Shah, Farooq A.; Saud, Zack; Loveridge, E. Joel; Karaca, Ismail; Butt, Tariq M.

Tolperisone hydrochloride improves motor functions in Parkinson’s disease via MMP-9 inhibition and by downregulating p38 MAPK and ERK1/2 signaling cascade

Zaman, Bushra; Mostafa, Irona; Hassan, Tazree; Ahmed, Shamim; Esha, Nusrat Jahan Ikbal; Chowdhury, Fowzia Afsana; Bosu, Tory; Chowdhury, Humayra Noor; Mallick, Anup; Islam, MM Shanjid; Sharmin, Ayesha; Uddin, Kabir M.; Hossain, Md. Mainul; Rahman, Mahbubur

Positive selection, genetic recombination, and intra-host evolution in novel equine coronavirus genomes and other members of the Embecovirus subgenus

Zehr, Jordan D.; Kosakovsky Pond, Sergei L.; Shank, Stephen D.; McQueary, Holly; Grenier, Jennifer K.; Whittaker, Gary R.; Stanhope, Michael J.; Goodman, Laura B.

Comparison of Mitochondrial Genome Expression Differences among Four Skink Species Distributed at Different Latitudes under Low-Temperature Stress

Zhan, Lemei; He, Jingyi; Ding, Lingyi; Storey, Kenneth B.; Zhang, Jiayong; Yu, Danna

Complete Mitochondrial Genomes of Nedyopus patrioticus: New Insights into the Color Polymorphism of Millipedes

Zhang, Gaoji; Xu, Tangjun; Chen, Yukun; Xu, Wei; Wang, Yinuo; Li, Yuanyuan; Zhu, Fuyuan; Liu, Hongyi; Ruan, Honghua

Deciphering the molecular logic of WOX5 function in the root stem cell organizer

Zhang, Ning; Bitterli, Pamela; Oluoch, Peter; Hermann, Marita; Aichinger, Ernst; Groot, Edwin P; Laux, Thomas

The First Complete Mitochondrial Genome of the Genus Litostrophus: Insights into the Rearrangement and Evolution of Mitochondrial Genomes in Diplopoda

Zhang, Gaoji; Gao, Ming; Chen, Yukun; Wang, Yinuo; Gan, Tianyi; Zhu, Fuyuan; Liu, Hongyi

Nodulating Aeschynomene indica without Nod Factor Synthesis Genes: In Silico Analysis of Evolutionary Relationship

Zhao, Mengguang; Dong, Jingyi; Zhang, Zhenpeng; Wang, Entao; Wang, Dandan; Xie, Huijie; Wang, Chao; Xie, Zhihong

An RRM domain protein SOE suppresses transgene silencing in rice

Zhao, Rui; Wu, Wen-Ai; Huang, Yi-Hua; Li, Xin-Kai; Han, Jia-Qi; Jiao, Wu; Su, Yin-Na; Zhao, He; Zhou, Yang; Cao, Wu-Qiang; Zhang, Xun; Wei, Wei; Zhang, Wan-Ke; Song, Qing-Xin; He, Xin-Jian; Ma, Biao; Chen, Shou-Yi; Tao, Jian-Jun; Yin, Cui-Cui; Zhang, Jin-Song

The BAS chromatin remodeler determines brassinosteroid-induced transcriptional activation and plant growth in Arabidopsis

Zhu, Tao; Wei, Chuangqi; Yu, Yaoguang; Zhang, Zhenzhen; Zhu, Jiameng; Liang, Zhenwei; Song, Xin; Fu, Wei; Cui, Yuhai; Wang, Zhi-Yong; Li, Chenlong

ВЫЧИСЛИТЕЛЬНЫЙ АНАЛИЗ СТРУКТУРНОГО CОСТАВА ГЕНОМОВ КОРОНАВИРУСОВ

В, Спринджук М.; И, Берник В.; С, Владыко А.; Л, Чжочжуан; П, Титов Л.

Embryogenesis of a calanoid copepod analyzed by transcriptomics

Acebal, Miguel Cifuentes; Dalgaard, Louise Torp; Jørgensen, Tue Sparholt; Hansen, Benni Winding

Interaction of Mesonivirus and Negevirus with arboviruses and the RNAi response in Culex tarsalis-derived cells

Agboli, Eric; Schulze, Jonny; Jansen, Stephanie; Cadar, Daniel; Sreenu, Vattipally B.; Leggewie, Mayke; Altinli, Mine; Badusche, Marlis; Jöst, Hanna; Börstler, Jessica; Schmidt-Chanasit, Jonas; Schnettler, Esther

Biosynthetic Gene Cluster Evaluation - Genome Mining for Natural Product Formation

Ahmad, Syed Nadim Marc

Biosynthetic Potential of Hypogymnia Holobionts: Insights into Secondary Metabolite Pathways

Ahmad, Nadim; Ritz, Manfred; Calchera, Anjuli; Otte, Jürgen; Schmitt, Imke; Brueck, Thomas; Mehlmer, Norbert

Safety assessment of Enterococcus lactis strains complemented with comparative genomics analysis reveals probiotic and safety characteristics of the entire species

Ahmed, Noha A.; Khattab, Rania Abdelmonem; Ragab, Yasser M.; Hassan, Mariam

Multimodal epigenetic changes and altered NEUROD1 chromatin binding in the mouse hippocampus underlie FOXG1 syndrome

Akol, Ipek; Izzo, Annalisa; Gather, Fabian; Strack, Stefanie; Heidrich, Stefanie; Ó hAilín, Darren; Villarreal, Alejandro; Hacker, Christine; Rauleac, Tudor; Bella, Chiara; Fischer, Andre; Manke, Thomas; Vogel, Tanja

Reusability Challenges of Scientific Workflows: A Case Study for Galaxy

Alam, Khairul; Roy, Banani; Serebrenik, Alexander

Pathovar-Specific PCR Method for Detection and Identification of Xanthomonas translucens pv. undulosa

Alvandi, Hosna; Taghavi, Seied Mohsen; Khojasteh, Moein; Rahimi, Touraj; Dutrieux, Cecile; Taghouti, Geraldine; Jacques, Marie-Agnès; Portier, Perrine; Osdaghi, Ebrahim

Distribution, inducibility, and characteristics of Latilactobacillus curvatus temperate phages

Ambros, Conrad L.; Ehrmann, Matthias A.

Comparative genomics of Brucella abortus and Brucella melitensis unravels the gene sharing, virulence factors and SNP diversity among the standard, vaccine and field strains

Anbazhagan, S.; Himani, K.M.; Karthikeyan, R.; Prakasan, Lakshmi; Dinesh, M.; Nair, Sonu S.; Lalsiamthara, Jonathan; Abhishek; Ramachandra, S.G.; Chaturvedi, V.K.; Chaudhuri, Pallab; Thomas, Prasad

Assessing antimicrobial and metal resistance genes in Escherichia coli from domestic groundwater supplies in rural Ireland

Andrade, Luisa; P Ryan, Michael; P Burke, Liam; Hynds, Paul; Weatherill, John; O'Dwyer, Jean

Assessing Antimicrobial and Metal Resistance Genes in Escherichia Coli from Domestic Groundwater Supplies in Rural Ireland

Andrade, Luisa; Ryan, Michael P.; Burke, Liam P.; Hynds, Paul; Weatherill, John; O'Dwyer, Jean

Melibiose–X-Gal–MacConkey Agar for Presumptive Differentiation of Escherichia albertii from E. coli and Salmonella from Poultry Meat

Annor, Samuel D.; Salazar, Karla S.; Pillai, Suresh D.; Kerth, Chris R.; Gill, Jason J.; Taylor, Thomas M.

Genomic and Phenotypic Characterization of Mastitis-Causing Staphylococci and Probiotic Lactic Acid Bacteria Isolated from Raw Sheep’s Milk

Apostolakos, Ilias; Skarlatoudi, Theodora; Vatavali, Kornilia; Giannouli, Agathi; Bosnea, Loulouda; Mataragas, Marios

Ceftazidime–avibactam resistance in Klebsiella pneumoniae sequence type 37: a decade of persistence and concealed evolution

Arcari, Gabriele; Polani, Riccardo; Bruno, Francesco; Capitani, Valerio; Sacco, Federica; Menichincheri, Gaia; Raponi, Giammarco; Carattoli, Alessandra

Genotypic Evolution of Klebsiella pneumoniae Sequence Type 512 during Ceftazidime/Avibactam, Meropenem/Vaborbactam, and Cefiderocol Treatment, Italy

Arcari, Gabriele; Cecilia, Federico; Oliva, Alessandra; Polani, Riccardo; Raponi, Giammarco; Sacco, Federica; Francesco, Alice De; Pugliese, Francesco; Carattoli, Alessandra

Multiplicity of blaKPC Genes and pKpQIL Plasmid Plasticity in the Development of Ceftazidime-Avibactam and Meropenem Coresistance in Klebsiella pneumoniae Sequence Type 307

Arcari, Gabriele; Polani, Riccardo; Santilli, Stefania; Capitani, Valerio; Sacco, Federica; Bruno, Francesco; Garcia-Fernandez, Aurora; Raponi, Giammarco; Villa, Laura; Gentile, Giuseppe; Carattoli, Alessandra

Cheminformatics identification of phenolics as modulators of key penicillin−binding proteins of Escherichia coli towards interventive antibacterial therapy

Aribisala, Jamiu Olaseni; Idowu, Kehinde; Makhanya, Talent Raymond; Sabiu, Saheed

Isolation, biochemical characterization, and genome sequencing of two high‐quality genomes of a novel chitinolytic Jeongeupia species

Arnold, Nathanael D.; Garbe, Daniel; Brück, Thomas B.

Dynamic modulation of genomic enhancer elements in the suprachiasmatic nucleus, the site of the mammalian circadian clock

Bafna, Akanksha; Banks, Gareth; Hastings, Michael H.; Nolan, Patrick M.

Harvesting mouse suprachiasmatic nucleus by vibrating microtome for diurnal transcriptome analysis

Bafna, Akanksha; Lau, Petrina; Banks, Gareth; Nolan, Patrick M.

Genome-wide identification and comparative in-silico characterization of β-galactosidase (GH-35) in ascomycetes and its role in germ tube development of Aspergillus fumigatus via RNA-seq analysis

Baig, Danish Ilyas; Zafar, Zeeshan; Khan, Haris Ahmed; Younus, Amna; Bhatti, Muhammad Faraz

Discovery of putative long non-coding RNAs expressed in the eyes of Astyanax mexicanus (Actinopterygii: Characidae)

Silva, Iuri; Aciole Barbosa, David; Kavalco, Karine Frehner; Nunes, Luiz R.; Pasa, Rubens; Menegidio, Fabiano B.

In Silico Probiogenomic Characterization of Lactobacillus delbrueckii subsp. lactis A4 Strain Isolated from an Armenian Honeybee Gut

Bazukyan, Inga; Georgieva-Miteva, Dimitrina; Velikova, Tsvetelina; Dimov, Svetoslav G.

Trimannose-coupled antimiR-21 for macrophage-targeted inhalation treatment of acute inflammatory lung damage

Beck, Christina; Ramanujam, Deepak; Vaccarello, Paula; Widenmeyer, Florenc; Feuerherd, Martin; Cheng, Cho-Chin; Bomhard, Anton; Abikeeva, Tatiana; Schädler, Julia; Sperhake, Jan-Peter; Graw, Matthias; Safi, Seyer; Hoffmann, Hans; Staab-Weijnitz, Claudia A.; Rad, Roland; Protzer, Ulrike; Frischmuth, Thomas; Engelhardt, Stefan

Enhanced weathering in the U.S. Corn Belt delivers carbon removal with agronomic benefits

Beerling, D.; Epihov, D.; Kantola, I.; Masters, M.; Reershemius, Tom; Planavsky, N.; Reinhard, Chris; Jordan, J.; Thorne, Sarah J.; Weber, James; Martin, Maria Val; Freckleton, R.; Hartley, S.; James, R.; Pearce, C.; DeLucia, E.; Banwart, S.

Botryosphaeriaceae gene machinery: Correlation between diversity and virulence

Belair, Marie; Restrepo-Leal, Julián D.; Praz, Coraline; Fontaine, Florence; Rémond, Caroline; Fernandez, Olivier; Besaury, Ludovic

A dual role of RBM42 in modulating splicing and translation of CDKN1A/p21 during DNA damage response

Ben-Oz, Bella M.; Machour, Feras E.; Nicola, Marian; Argoetti, Amir; Polyak, Galia; Hanna, Rawad; Kleifeld, Oded; Mandel-Gutfreund, Yael; Ayoub, Nabieh

Sex-biased gene expression in nutrient-sensing pathways

Bennett-Keki, Suzanne; Fowler, Emily K.; Folkes, Leighton; Moxon, Simon; Chapman, Tracey

Metaproteomic analysis of nasopharyngeal swab samples to identify microbial peptides and potential co-infection status in COVID-19 patients

Bihani, Surbhi; Gupta, Aryan; Mehta, Subina; Rajczewski, Andrew; Johnson, James; Borishetty, Dhanush; Griffin, Timothy; Srivastava, Sanjeeva; Jagtap, Pratik

Metaproteomic Analysis of Nasopharyngeal Swab Samples to Identify Microbial Peptides in COVID-19 Patients

Bihani, Surbhi; Gupta, Aryan; Mehta, Subina; Rajczewski, Andrew T.; Johnson, James; Borishetty, Dhanush; Griffin, Timothy J.; Srivastava, Sanjeeva; Jagtap, Pratik D.

Integrated Meta-Omics Analysis Unveils the Pathways Modulating Tumorigenesis and Proliferation in High-Grade Meningioma

Biswas, Deeptarup; Halder, Ankit; Barpanda, Abhilash; Ghosh, Susmita; Chauhan, Aparna; Bhat, Lipika; Epari, Sridhar; Shetty, Prakash; Moiyadi, Aliasgar; Ball, Graham Roy; Srivastava, Sanjeeva

Genome sequence analysis and characterization of Bacillus altitudinis B12, a polylactic acid- and keratin-degrading bacterium

Bordel, Sergio; Martín-González, Diego; Muñoz, Raúl; Santos-Beneit, Fernando

The millennial dynamics of malaria in the mediterranean basin: documenting Plasmodium spp. on the medieval island of Corsica

Boualam, Mahmoud Abdelwadoud; Corbara, Anne-Gaëlle; Aboudharam, Gérard; Istria, Daniel; Signoli, Michel; Costedoat, Caroline; Drancourt, Michel; Pradines, Bruno

Direct Xylella fastidiosa whole genome sequencing from various plant species using targeted enrichment

Boutigny, Anne-Laure; Remenant, Benoit; Legendre, Bruno; Beven, Véronique; Rolland, Mathieu; Blanchard, Yannick; Cunty, Amandine

A novel variant of the Listeria monocytogenes type VII secretion system EssC component is associated with an Rhs toxin

Bowran, Kieran; Garrett, Stephen R.; Vliet, Arnoud H. M.; Palmer, Tracy

A novel variant of theListeria monocytogenestype VII secretion system EssC component is associated with an Rhs toxin

Bowran, Kieran; Garrett, Stephen; Vliet, Arnoud van; Palmer, Tracy

Detection and genomic characterization of a multidrug-resistant Salmonella Newport co-harbouring blaCMY-2, qnrB19 and mcr-9 from the diarrheic faeces of a foal

Braga, Pollyana Rennó Campos; Santos, Carla Adriana; Bertani, Amanda Maria de Jesus; Vieira, Thais; Amarante, Ariadne Ferreira; Reis, Alex Domingos; Sacchi, Cláudio Tavares; Camargo, Carlos Henrique; Ribeiro, Marcio Garcia; Borges, Alexandre Secorun; Tiba-Casas, Monique Ribeiro

The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond

Bray, Simon; Chilton, John; Bernt, Matthias; Soranzo, Nicola; Beek, Marius van den; Batut, Bérénice; Rasche, Helena; Čech, Martin; Cock, Peter J. A.; Grüning, Björn; Nekrutenko, Anton

Harmful Algal Bloom Toxin Aerosol Exposure and Airway Inflammation

Breidenbach, Joshua David

Genome-wide deposition of 6-methyladenine in human DNA reduces the viability of HEK293 cells and directly influences gene expression

Broche, Julian; Köhler, Anja R.; Kühnel, Fiona; Osteresch, Bernd; Chandrasekaran, Thyagarajan T.; Adam, Sabrina; Brockmeyer, Jens; Jeltsch, Albert

Ploidy in Vibrio natriegens: Very Dynamic and Rapidly Changing Copy Numbers of Both Chromosomes

Brück, Patrik; Wasser, Daniel; Soppa, Jörg

FBXL12 degrades FANCD2 to regulate replication recovery and promote cancer cell survival under conditions of replication stress

Brunner, Andrä; Li, Qiuzhen; Fisicaro, Samuele; Kourtesakis, Alexandros; Viiliäinen, Johanna; Johansson, Henrik J; Pandey, Vijaya; Mayank, Adarsh K; Lehtiö, Janne; Wohlschlegel, James A; Spruck, Charles; Rantala, Juha K; Orre, Lukas M; Sangfelt, Olle

Collisions of RNA polymerases behind the replication fork promote alternative RNA splicing in newly replicated chromatin

Bruno, Federica; Coronel-Guisado, Cristóbal; González-Aguilera, Cristina

PIM kinases regulate early human Th17 cell differentiation

Buchacher, Tanja; Shetty, Ankitha; Koskela, Saara A.; Smolander, Johannes; Kaukonen, Riina; Sousa, António G. G.; Junttila, Sini; Laiho, Asta; Rundquist, Olof; Lönnberg, Tapio; Marson, Alexander; Rasool, Omid; Elo, Laura L.; Lahesmaa, Riitta

Genomic analysis and antimicrobial activity of β-lactam/β-lactamase inhibitors and other agents against KPC-producing Klebsiella pneumoniae clinical isolates from Brazilian hospitals

Camargo, Carlos Henrique; Yamada, Amanda Yaeko; Souza, Andreia Rodrigues; Cunha, Marcos Paulo Vieira; Ferraro, Pedro Smith Pereira; Sacchi, Claudio Tavares; Santos, Marlon Benedito; Campos, Karoline Rodrigues; Tiba-Casas, Monique Ribeiro; Freire, Maristela Pinheiro; Barretti, Pasqual

Genomics and Antimicrobial Susceptibility of Clinical Pseudomonas aeruginosa Isolates from Hospitals in Brazil

Camargo, Carlos Henrique; Yamada, Amanda Yaeko; Souza, Andreia Rodrigues de; Lima, Marisa de Jesus de Castro; Cunha, Marcos Paulo Vieira; Ferraro, Pedro Smith Pereira; Sacchi, Claudio Tavares; Santos, Marlon Benedito Nascimento dos; Campos, Karoline Rodrigues; Tiba-Casas, Monique Ribeiro; Freire, Maristela Pinheiro; Barretti, Pasqual

Genome-Based Retrospective Analysis of a Providencia stuartii Outbreak in Rome, Italy: Broad Spectrum IncC Plasmids Spread the NDM Carbapenemase within the Hospital

Capitani, Valerio; Arcari, Gabriele; Oliva, Alessandra; Sacco, Federica; Menichincheri, Gaia; Fenske, Linda; Polani, Riccardo; Raponi, Giammarco; Antonelli, Guido; Carattoli, Alessandra

CpG DNA methylation changes during epididymal sperm maturation in bulls

Capra, Emanuele; Turri, F.; Lazzari, B.; Biffani, S.; Lange Consiglio, A.; Ajmone Marsan, P.; Stella, A.; Pizzi, F.

Comparative genome features and secondary metabolite biosynthetic potential of Kutzneria chonburiensis and other species of the genus Kutzneria

Chanama, Manee; Prombutara, Pinidphon; Chanama, Suchart

DOT1L deletion impairs the development of cortical parvalbumin-expressing interneurons

Cheffer, Arquimedes; Garcia-Miralles, Marta; Maier, Esther; Akol, Ipek; Franz, Henriette; Srinivasan, Vandana Shree Vedartham; Vogel, Tanja

USP7/Maged1-mediated H2A monoubiquitination in the paraventricular thalamus: an epigenetic mechanism involved in cocaine use disorder

Cheron, Julian; Beccari, Leonardo; Hagué, Perrine; Icick, Romain; Despontin, Chloé; Carusone, Teresa; Defrance, Matthieu; Bhogaraju, Sagar; Martin-Garcia, Elena; Capellan, Roberto; Maldonado, Rafael; Vorspan, Florence; Bonnefont, Jérôme; Kerchove d’Exaerde, Alban

New insights from short and long reads sequencing to explore cytochrome b variants in Plasmopara viticola populations collected from vineyards and related to resistance to complex III inhibitors

Cherrad, Semcheddine; Gillet, Benjamin; Dellinger, Julien; Bellaton, Lalie; Roux, Pascale; Hernandez, Catalina; Steva, Hervé; Perrier, Lauriane; Vacher, Sébastien; Hughes, Sandrine

Monitoraggio della comunità microbiologica durante un processo di fermentazione anaerobica di scarti vitivinicoli

Cigana, Kevin <1994>

Mapeo in silico de regiones ricas en epítopos de células T en el proteoma de SARS-CoV-2: población chilena como caso de estudio

Cisternas Ramos, Juan I.

Proceedings of 2023 International Camellia Congress in Italy

Corneo, Andrea

The first cavefish in the Dinaric Karst? Cave colonization made possible by phenotypic plasticity in Telestes karsticus

Čupić, Mateo; Marčić, Zoran; Lukić, Marko; Gračan, Romana; Bilandžija, Helena

Identification and functional characterisation of a locus for target site integration inFusarium graminearum

Darino, Martin; Urban, Martin; Kaur, Navneet; Machado-Wood, Ana; Grimwade-Mann, Michael; Smith, Dan; Beacham, Andrew; Hammond-Kosack, Kim

Bioinformatic challenge on prostate cancer and urinary microbiome

Davasaz Tabrizi, Elmira; Sevil, Mushteba; Sajer Naser, Omar; Arican, Ercan

Whole genome sequencing of Bacillus anthracis isolated from animal in the 1960s, Brazil, belonging to the South America subclade

Andrade, Tânia Sueli; Camargo, Carlos Henrique; Campos, Karoline Rodrigues; Reis, Alex Domingos; Santos, Marlon Benedito do Nascimento; Zanelatto, Vanessa Nieri; Takagi, Elizabeth Harummyy; Sacchi, Claudio Tavares

Whole genome sequence analysis of the first reported isolate of Salmonella Agona carrying blaCTX-M-55 gene in Brazil

Jesus Bertani, Amanda Maria; Vieira, Thais; Reis, Alex Domingos; Santos, Carla Adriana; Almeida, Elisabete Aparecida; Camargo, Carlos Henrique; Casas, Monique Ribeiro Tiba

Premature termination of transcription is shaped by Rho and translated uORFS in Mycobacterium tuberculosis

D'Halluin, Alexandre; Polgar, Peter; Kipkorir, Terry; Patel, Zaynah; Cortes, Teresa; Arnvig, Kristine B

Analiza varijabilnosti mitogenoma autohtonih pasmina ovaca Republike Hrvatske

Diab, Filip

Proteomics analysis reveals three potential cacao target that interacts with Moniliophthora perniciosa NEP during witches broom disease

Carmo Santos, Maria Luíza; Santos Lopes, Natasha; Ferreira, Monaliza Macedo; Amaral, Geiseane Velozo; Santos, Ariana Silva; Dias, Cristiano Villela; Pirovani, Carlos Priminho; Alvim, Fátima Cerqueira

Silent gene clusters encode magnetic organelle biosynthesis in a non-magnetotactic phototrophic bacterium

Dziuba, M. V.; Paulus, A.; Schramm, L.; Awal, R. P.; Pósfai, M.; Monteil, C. L.; Fouteau, S.; Uebe, R.; Schüler, D.

Epidemiological Description and Detection of Antimicrobial Resistance in Various Aquatic Sites in Marseille, France

El-Sawalhi, Sabah; Revol, Océane; Chamieh, Amanda; Lacoste, Alexandre; Annessi, Alexandre; La Scola, Bernard; Rolain, Jean-Marc; Pagnier, Isabelle

Mitochondrial polymorphism m.3017C>T of SHLP6 relates to heterothermy

Emser, Sarah V.; Spielvogel, Clemens P.; Millesi, Eva; Steinborn, Ralf

Exploring the potential of fluoro-flavonoid derivatives as anti-lung cancer agents: DFT, molecular docking, and molecular dynamics techniques

Esha, Nusrat Jahan Ikbal; Quayum, Syeda Tasnim; Saif, Minhaz Zabin; Almatarneh, Mansour H.; Rahman, Shofiur; Alodhayb, Abdullah; Poirier, Raymond A.; Uddin, Kabir M.

BASIDIN as a New Protein Effector of the Phytopathogen Causing Witche’s Broom Disease in Cocoa

Farias, Keilane Silva; Ferreira, Monaliza Macêdo; Amaral, Geiseane Veloso; Zugaib, Maria; Santos, Ariana Silva; Gomes, Fábio Pinto; Rezende, Rachel Passos; Gramacho, Karina Peres; Aguiar, Eric Roberto Guimarães Rocha; Pirovani, Carlos Priminho

Structural Evolution of Gene Promoters Driven by Primate-Specific KRAB Zinc Finger Proteins

Farmiloe, Grace; Bree, Elisabeth J; Robben, Stijn F; Janssen, Lara J M; Mol, Lisa; Jacobs, Frank M J

Book of Abstracts of the 1st Colloquium for Bioinformatics Learning, Education, and Training

Fatima, Ayesha; Khan, Mohammad Asif

Análise de splicing alternativo durante o processo de amadurecimento de frutos: aplicação em café e tomate

Fernandes, Miquéias

Draft Genome Sequence of an Isolate of Genotype VII Newcastle Disease Virus Isolated from an Outbreak in Fighting Cock in Peru

Fernández-Díaz, Manolo; Montalván-Avalos, Angela; Isasi-Rivas, Gisela; Villanueva-Pérez, Doris; Quiñones-Garcia, Stefany; Tataje-Lavanda, Luis; Rios-Matos, Dora; Lulo-Vargas, Milagros; Fernández-Sánchez, Manolo; Guevara-Sarmiento, Luis A.; Zimic, Mirko; Rojas-Neyra, Aldo; Calderón, Katherine

Avaliação da expressão diferencial em Physcomitrium patens na busca das adaptações moleculares responsivas na arquitetura dos órgãos reprodutivos

Ferreira, Tiego

Zinc controls operator affinity of human transcription factor YY1 by mediating dimerization via its N-terminal region

Figiel, Małgorzata; Szubert, Filip; Luchinat, Enrico; Bonarek, Piotr; Baranowska, Anna; Wajda-Nikiel, Katarzyna; Wilamowski, Mateusz; Miłek, Piotr; Dziedzicka-Wasylewska, Marta; Banci, Lucia; Górecki, Andrzej

Peptide-mediated inhibition of the transcriptional regulator Elongin BC induces apoptosis in cancer cells

Fischer, Sabrina; Trinh, Van Tuan; Simon, Clara; Weber, Lisa M.; Forné, Ignasi; Nist, Andrea; Bange, Gert; Abendroth, Frank; Stiewe, Thorsten; Steinchen, Wieland; Liefke, Robert; Vázquez, Olalla

Building on Communities to Further Software Sustainability

Fouilloux, Anne; Iaquinta, Jean; Gupta, Alok Kumar; Struthers, Hamish; Landgren, Oskar; Dwarakanath, Prashanth; Bergman, Tommi; He, Yanchun

Identification of a Czc-like operon of the periodontal pathobiont P. gingivalis involved in metal ion efflux

Gains, A. F.; Lambert, D. W.; Stafford, G. P.

Pilot Study on the Action of Thymus vulgaris Essential Oil in Treating the Most Common Bacterial Contaminants and Salmonella enterica subsp. enterica Serovar Derby in Poultry Litter

Galgano, Michela; Pellegrini, Francesco; Fracchiolla, Giuseppe; Mrenoshki, Daniela; Zarea, Aya Attia Koraney; Bianco, Angelica; Del Sambro, Laura; Capozzi, Loredana; Schiavone, Antonella; Saleh, Medhat S.; Camero, Michele; Tempesta, Maria; Cirone, Francesco; Buonavoglia, Domenico; Pratelli, Annamaria; Buonavoglia, Alessio

Near complete genome sequences from Southern Vietnam revealed local features of genetic diversity and intergenerational changes in SARS- CoV-2 variants in 2020–2021

Gladkikh, Anna S.; Cao, Thang M.; Klyuchnikova, Ekaterina O.; Dao, Manh H.; Sharova, Alena A.; Melnichenko, Vasilina D.; Popova, Margarita R.; Arbuzova, Tatiana V.; Sbarzaglia, Valeriya A.; Tsyganova, Nadezhda A.; Ramsay, Edward; Dedkov, Vladimir G.

MYC overexpression and SMARCA4 loss cooperate to drive medulloblastoma formation in mice

Göbel, Carolin; Godbole, Shweta; Schoof, Melanie; Holdhof, Dörthe; Kresbach, Catena; Loose, Carolin; Neumann, Julia; Schüller, Ulrich

Shigella induces epigenetic reprogramming of zebrafish neutrophils

Gomes, Margarida C; Brokatzky, Dominik; Bielecka, Magdalena K; Wardle, Fiona C; Mostowy, Serge

Obligate biotroph downy mildew consistently induces near-identical protective microbiomes in Arabidopsis thaliana

Goossens, Pim; Spooren, Jelle; Baremans, Kim C. M.; Andel, Annemiek; Lapin, Dmitry; Echobardo, Nakisa; Pieterse, Corné M. J.; Ackerveken, Guido; Berendsen, Roeland L.

Spitting in the wind?—The challenges of RNA sequencing for biomarker discovery from saliva

Gosch, Annica; Banemann, Regine; Dørum, Guro; Haas, Cordula; Hadrys, Thorsten; Haenggi, Nadescha; Kulstein, Galina; Neubauer, Jacqueline; Courts, Cornelius

SWARM: A Scientific Workflow Fragments Recommendation Approach via Contrastive Learning and Semantic Matching

Gu, Yang; Cao, Jian; Tang, Jinghua; Qian, Shiyou; Guan, Wei

SWORTS: A Scientific Workflow Retrieval Approach by Learning Textual and Structural Semantics

Gu, Yang; Cao, Jian; Qian, Shiyou; Guan, Wei

Fast and accurate genome-wide predictions and structural modeling of protein–protein interactions using Galaxy

Guerler, Aysam; Baker, Dannon; Beek, Marius; Gruening, Bjoern; Bouvier, Dave; Coraor, Nate; Shank, Stephen D.; Zehr, Jordan D.; Schatz, Michael C.; Nekrutenko, Anton

Combining Fusion of Cells with CRISPR-Cas9 Editing for the Cloning of Large DNA Fragments or Complete Bacterial Genomes in Yeast

Guesdon, Gabrielle; Gourgues, Géraldine; Rideau, Fabien; Ipoutcha, Thomas; Manso-Silván, Lucía; Jules, Matthieu; Sirand-Pugnet, Pascal; Blanchard, Alain; Lartigue, Carole

Precision Genome Engineering in Streptococcus suis Based on a Broad-Host-Range Vector and CRISPR-Cas9 Technology

Gussak, Alex; Ferrando, Maria Laura; Schrama, Mels; Baarlen, Peter; Wells, Jerry Mark

DNA-directed termination of RNA polymerase II transcription

Han, Zhong; Moore, George A.; Mitter, Richard; Martinez, David Lopez; Wan, Li; Svejstrup, A. Barbara Dirac; Rueda, David S.; Svejstrup, Jesper Q.

Profiling of somatic, population and phenotypic heterogeneity in genetic causes of ALS/MND

Haque, Shaila

A comparative gene expression matrix in Apoe-deficient mice identifies unique and atherosclerotic disease stage-specific gene regulation patterns in monocytes and macrophages

Härdtner, Carmen; Kumar, Anup; Ehlert, Carolin A.; Vico, Tamara Antonela; Starz, Christopher; Ehr, Alexander; Krebs, Katja; Dufner, Bianca; Hoppe, Natalie; Stachon, Peter; Heidt, Timo; Wolf, Dennis; Mühlen, Constantin; Grüning, Björn; Robbins, Clinton S.; Maegdefessel, Lars; Westermann, Dirk; Dederichs, Tsai-Sang; Hilgendorf, Ingo

Genome-wide identification and characterization of the plant defensins (Pdfs) gene family in selected Leguminous crops and their expression profiles in response to biotic and abiotic stresses

Hassan, Zarqa; Abbas, Amjad; Shafique, Ikhlas

S-Locus Genotyping in Japanese Plum by High Throughput Sequencing Using a Synthetic S-Loci Reference Sequence

Hedhly, Afif; Guerra, María Engracia; Grimplet, Jerome; Rodrigo, Javier

The impact of salt stress on the physiology and the transcriptome of the model streptophyte green alga Chara braunii

Heß, Daniel; Heise, Carolin M.; Schubert, Hendrik; Hess, Wolfgang R.; Hagemann, Martin

Insight into the nodal cells transcriptome of the streptophyte green alga Chara braunii S276

Heß, Daniel; Holzhausen, Anja; Hess, Wolfgang R.

Galaxy Training: A powerful framework for teaching!

Hiltemann, Saskia; Rasche, Helena; Gladman, Simon; Hotz, Hans-Rudolf; Larivière, Delphine; Blankenberg, Daniel; Jagtap, Pratik D; Wollmann, Thomas; Bretaudeau, Anthony; Goué, Nadia; Griffin, Timothy J; Royaux, Coline; Le Bras, Yvan; Mehta, Subina; Syme, Anna; Coppens, Frederik; Droesbeke, Bert; Soranzo, Nicola; Bacon, Wendi; Psomopoulos, Fotis; Gallardo-Alba, Cristóbal; Davis, John; Föll, Melanie Christine; Fahrner, Matthias; Doyle, Maria A; Serrano-Solano, Beatriz; Fouilloux, Anne Claire; Heusden, Peter; Maier, Wolfgang; Clements, Dave; Heyl, Florian; =Galaxy Training Network; Grüning, Björn; Batut, Bérénice

Analysis of blood microbiome dysbiosis in pulmonary sarcoidosis by decision tree model

Hodzhev, Yordan

Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities

Hoffmann, Nils; Maus, Irena; Beier, Sebastian; Belmann, Peter; Krüger, Jan; Tauch, Andreas; Goesmann, Alexander; Eils, Roland; Bork, Peer; Kohlbacher, Oliver; Kummer, Ursula; Backofen, Rolf; Buchhalter, Ivo; Sczyrba, Alexander

Extracellular vesicles in host-parasite interaction of Entamoeba histolytica (Schaudinn, 1903) with primary monocytes

Honecker, Barbara Irene

Gene expression networks and functionally enriched pathways involved in the response of domestic chicken to acute heat stress

Hosseinzadeh, Sevda; Hasanpur, Karim

Complete genome sequence of a human bacteremia isolate of Kalamiella piersonii

Howard, Mondraya; Maki, Joel J.; Connelly, Sara; Hardy, Dwight J.; Cameron, Andrew

A translational regulator MHZ9 modulates ethylene signaling in rice

Huang, Yi-Hua; Han, Jia-Qi; Ma, Biao; Cao, Wu-Qiang; Li, Xin-Kai; Xiong, Qing; Zhao, He; Zhao, Rui; Zhang, Xun; Zhou, Yang; Wei, Wei; Tao, Jian-Jun; Zhang, Wan-Ke; Qian, Wenfeng; Chen, Shou-Yi; Yang, Chao; Yin, Cui-Cui; Zhang, Jin-Song

Investigating the patterns of simple sequence repeats (SSRs) inferred from the whole genome of a critically endangered species Cassine koordersii kosterm

Husaini, I. P. A.; Rinandio, D. S.; Martiansyah, I.; Magandhi, M.; Suhatman, A.; Irsyam, A. S. D.; Irwanto, R. R.; Setiawan, E.; Hariri, M. R.

External DNA contamination and efficiency of bleach decontamination for arthropod diet analysis

Huszarik, Maike; Röder, Nina; Eberhardt, Linda; Kennedy, Susan; Krehenwinkel, Henrik; Schwenk, Klaus; Entling, Martin H.

Indirect effects of chemical stream pollution on the riparian food web

Huszarik, Maike

CRISPR library screening to develop HEK293-derived cell lines with improved lentiviral vector titers

Iaffaldano, Brian J.; Marino, Michael P.; Reiser, Jakob

Laktik Asit Bakterilerinde Tetrasiklin Direncinin Fenotipik ve Tüm Genom Dizilerinde in silico Genotipik Olarak Araştırılması

Ilikkan, Özge

Changes in rice rhizosphere and bulk soil bacterial communities in the Doñana wetlands at different growth stages

Iniesta-Pallarés, Macarena; Brenes-Álvarez, Manuel; Lasa, Ana V.; Fernández-López, Manuel; Álvarez, Consolación; Molina-Heredia, Fernando P.; Mariscal, Vicente

Harnessing the power of comparative genomics to support the distinction of sister species within Phyllosticta and development of highly specific detection of Phyllosticta citricarpa causing citrus black spot by real-time PCR

Ioos, Renaud; Puertolas, Alexandra; Renault, Camille; Ndiaye, Aida; Cerf-Wendling, Isabelle; Hubert, Jacqueline; Wang, Wen; Jiao, Chen; Li, Hongye; Armengol, Josep; Aguayo, Jaime

Rise and fall of SARS-CoV-2 variants in Rotterdam: Comparison of wastewater and clinical surveillance

Izquierdo-Lara, Ray W.; Heijnen, Leo; Oude Munnink, Bas B.; Schapendonk, Claudia M. E.; Elsinga, Goffe; Langeveld, Jeroen; Post, Johan; Prasad, Divyae K.; Carrizosa, Christian; Been, Frederic; Beek, Janko; Schilperoort, Remy; Vriend, Rianne; Fanoy, Ewout; Schepper, Evelien I. T.; Sikkema, Reina S.; Molenkamp, Richard; Aarestrup, Frank M.; Medema, Gertjan; Koopmans, Marion P. G.; Graaf, Miranda

Nucleophosmin 1 cooperates with the methyltransferase DOT1L to regulate H3K79me2 levels and DNA satellites expression at peri-nucleolar heterochromatin

izzo, annalisa; akol, ipek; Villarreal, Alejandro; Garcia-Miralles, Marta; Bovio, Patrick; Heidrich, Stefanie; Vogel, Tanja

Total escape of SARS-CoV-2 from dual monoclonal antibody therapy in an immunocompromised patient

Jaki, Lena; Weigang, Sebastian; Kern, Lisa; Kramme, Stefanie; Wrobel, Antoni G.; Grawitz, Andrea B.; Nawrath, Philipp; Martin, Stephen R.; Dähne, Theo; Beer, Julius; Disch, Miriam; Kolb, Philipp; Gutbrod, Lisa; Reuter, Sandra; Warnatz, Klaus; Schwemmle, Martin; Gamblin, Steven J.; Neumann-Haefelin, Elke; Schnepf, Daniel; Welte, Thomas; Kochs, Georg; Huzly, Daniela; Panning, Marcus; Fuchs, Jonas

Unraveling the transcriptional network regulated by miRNAs in blast-resistant and blast-susceptible rice genotypes during Magnaporthe oryzae interaction

Javed, Mohammed; Reddy, Bhaskar; Sheoran, Neelam; Ganesan, Prakash; Kumar, Aundy

Tailored Multiplex Real-Time RT-PCR with Species-Specific Internal Positive Controls for Detecting SARS-CoV-2 in Canine and Feline Clinical Samples

Jeon, Gyu-Tae; Kim, Hye-Ryung; Kim, Jong-Min; Baek, Ji-Su; Shin, Yeun-Kyung; Kwon, Oh-Kyu; Kang, Hae-Eun; Cho, Ho-Seong; Cheon, Doo-Sung; Park, Choi-Kyu

Comparative Genomic Analysis and Species Delimitation: A Case for Two Species in the Zoonotic Cestode Dipylidium caninum

Jesudoss Chelladurai, Jeba R. J.; Abraham, Aloysius; Quintana, Theresa A.; Ritchie, Deb; Smith, Vicki

A high-throughput structural dynamics approach for identification of potential agonists of FFAR4 for type 2 diabetes mellitus therapy

Jhinjharia, Divya; Kaushik, Aman Chandra; Sahi, Shakti

Laktik Asit Bakterilerinde Tetrasiklin Direncinin Fenotipik ve Tüm Genom Dizilerinde in silico Genotipik Olarak Araştırılması. | EBSCOhost

Kahraman Ilikkan, Özge

Azithromycin Susceptibility Testing and Molecular Investigation of Neisseria gonorrhoeae Isolates Collected in Russia, 2020–2021

Kandinov, Ilya; Shaskolskiy, Boris; Kravtsov, Dmitry; Vinokurova, Alexandra; Gorshkova, Sofya; Kubanov, Alexey; Solomka, Victoria; Shagabieva, Julia; Deryabin, Dmitry; Dementieva, Ekaterina; Gryadunov, Dmitry

Emergence of Azithromycin-Resistant Neisseria gonorrhoeae Isolates Belonging to the NG-MAST Genogroup 12302 in Russia

Kandinov, Ilya; Dementieva, Ekaterina; Filippova, Marina; Vinokurova, Alexandra; Gorshkova, Sofya; Kubanov, Alexey; Solomka, Victoria; Shagabieva, Julia; Deryabin, Dmitry; Shaskolskiy, Boris; Gryadunov, Dmitry

Foremost report of the whole genome of Spirabiliibacterium mucosae from India and comparative genomics of the novel genus Spirabiliibacterium

Karthik, Kumaragurubaran; Anbazhagan, Subbaiyan; Ananda Chitra, Murugesan; Ramya, Rajendran; Sridhar, Ramaswamy; Dhinakar Raj, Gopal

Improving the Human Genome Annotation Using Integrative Analysis and Deep Learning Methods

Kefi, Amira

Comparative phylogenomic insights of KCS and ELO gene families in Brassica species indicate their role in seed development and stress responsiveness

Khan, Uzair Muhammad; Rana, Iqrar Ahmad; Shaheen, Nabeel; Raza, Qasim; Rehman, Hafiz Mamoon; Maqbool, Rizwana; Khan, Iqrar Ahmad; Atif, Rana Muhammad

Comparative genomic analysis of Colistin resistant Escherichia coli isolated from pigs, a human and wastewater on colistin withdrawn pig farm

Khine, Nwai Oo; Wongsurawat, Thidathip; Jenjaroenpun, Piroon; Hampson, David J.; Prapasarakul, Nuvee

Proteinortho6: pseudo-reciprocal best alignment heuristic for graph-based detection of (co-)orthologs

Klemm, Paul; Stadler, Peter F.; Lechner, Marcus

The role of p22phox in the cardiovascular response to obesity

Klop, Mathieu Edouard

Genome-Level Investigation of WRKY Transcription Factors and Their Potential Roles in Fruit Peel Ripening and Coloration in the Common Fig (Ficus carica L.)

Kmeli, Narjes; Bettaieb, Inchirah; Hamdi, Jihen; Mlouka, Rania; Gaaied, Sonia; Chatti, Khaled; Bouktila, Dhia

Genome-wide characterization of Ficus carica MADS-box transcription factors with a focus on their roles during fruit development

Kmeli, Narjes; Hamdi, Jihen; Bouktila, Dhia

Tigecycline causes loss of cell viability mediated by mitochondrial OXPHOS and RAC1 in hepatocellular carcinoma cells

Koch, Dominik T.; Yu, Haochen; Beirith, Iris; Schirren, Malte; Drefs, Moritz; Liu, Yunfei; Knoblauch, Mathilda; Koliogiannis, Dionysios; Sheng, Weiwei; De Toni, Enrico N.; Bazhin, Alexandr V.; Renz, Bernhard W.; Guba, Markus O.; Werner, Jens; Ilmer, Matthias

Proteome alterations in human autopsy tissues in relation to time after death

Kocsmár, Éva; Schmid, Marlene; Cosenza-Contreras, Miguel; Kocsmár, Ildikó; Föll, Melanie; Krey, Leah; Barta, Bálint András; Rácz, Gergely; Kiss, András; Werner, Martin; Schilling, Oliver; Lotz, Gábor; Bronsert, Peter

MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments

Kohler, Devon; Kaza, Maanasa; Pasi, Cristina; Huang, Ting; Staniak, Mateusz; Mohandas, Dhaval; Sabido, Eduard; Choi, Meena; Vitek, Olga

Integrated signaling and transcriptome analysis reveals Src family kinase individualities and novel pathways controlled by their constitutive activity

Koutras, Nikolaos; Morfos, Vasileios; Konnaris, Kyriakos; Kouvela, Adamantia; Shaukat, Athanasios-Nasir; Stathopoulos, Constantinos; Stamatopoulou, Vassiliki; Nika, Konstantina

Exploring the influences of geographical variation on sequence signatures in the human gut microbiome

Kumar, Gauraw; Bhadury, Punyasloke

A reappraisal of transcriptional regulation by NR5A1 and beta-catenin in adrenocortical carcinoma

Lalli, Enzo

Whole genome sequencing in the palm of your hand: how to implement a MinION Galaxy-based workflow in a food safety laboratory for rapid Salmonella spp. serotyping, virulence, and antimicrobial resistance gene identification

Lamas, Alexandre; Garrido-Maestu, Alejandro; Prieto, Alberto; Cepeda, Alberto; Franco, Carlos Manuel

Ribosome inactivating proteins in insects: HGT, gene expression, and functional implications

Lapadula, Walter J.; Juri Ayub, Maximiliano

Scalable, accessible, and reproducible reference genome assembly and evaluation in Galaxy

Larivière, Delphine; Abueg, Linelle; Brajuka, Nadolina; Gallardo-Alba, Cristóbal; Grüning, Bjorn; Ko, Byung June; Ostrovsky, Alex; Palmada-Flores, Marc; Pickett, Brandon; Rabbani, Keon; Balacco, Jennifer; Chaisson, Mark; Cheng, Haoyu; Collins, Joanna; Denisova, Alexandra; Fedrigo, Olivier; Gallo, Guido Roberto; Giani, Alice Maria; Gooder, Grenville MacDonald; Jain, Nivesh; Johnson, Cassidy; Kim, Heebal; Lee, Chul; Marques-Bonet, Tomas; O’Toole, Brian; Rhie, Arang; Secomandi, Simona; Sozzoni, Marcella; Tilley, Tatiana; Uliano-Silva, Marcela; Beek, Marius; Waterhouse, Robert; Phillippy, Adam; Jarvis, Erich; Schatz, Michael; Nekrutenko, Anton; Formenti, Giulio

Natural diversity of lactococci in γ-aminobutyric acid (GABA) production and genetic and phenotypic determinants

Laroute, Valérie; Aubry, Nathalie; Audonnet, Marjorie; Mercier-Bonin, Muriel; Daveran-Mingot, Marie-Line; Cocaign-Bousquet, Muriel

Mechanism-based and computational modeling of hydrogen sulfide biogenesis inhibition: interfacial inhibition

Le Corre, Laurent; Padovani, Dominique

Global and local functions of the Fused kinase ortholog CdaH in intracellular patterning in Tetrahymena

Lee, Chinkyu; Maier, Wolfgang; Jiang, Yu-Yang; Nakano, Kentaro; Lechtreck, Karl F.; Gaertig, Jacek

Immunoregulatory capacity of human skeletal muscle cells during a Trypanosoma cruzi infection

Lehmann, Cari

The Amyloid Precursor Protein Regulates Synaptic Transmission at Medial Perforant Path Synapses

Lenz, Maximilian; Eichler, Amelie; Kruse, Pia; Galanis, Christos; Kleidonas, Dimitrios; Andrieux, Geoffroy; Boerries, Melanie; Jedlicka, Peter; Müller, Ulrike; Deller, Thomas; Vlachos, Andreas

Denervated mouse CA1 pyramidal neurons express homeostatic synaptic plasticity following entorhinal cortex lesion

Lenz, Maximilian; Eichler, Amelie; Kruse, Pia; Stöhr, Phyllis; Kleidonas, Dimitrios; Galanis, Christos; Lu, Han; Vlachos, Andreas

Estudio de mecanismos de adaptación y persistencia desplegados por patógenos multirresistentes durante la infección pulmonar crónica en personas con fibrosis quística

León, Laura Beltina

Proteogenomic data and resources for pan-cancer analysis

Li, Yize; Dou, Yongchao; Leprevost, Felipe Da Veiga; Geffen, Yifat; Calinawan, Anna P.; Aguet, François; Akiyama, Yo; Anand, Shankara; Birger, Chet; Cao, Song; Chaudhary, Rekha; Chilappagari, Padmini; Cieslik, Marcin; Colaprico, Antonio; Zhou, Daniel Cui; Day, Corbin; Domagalski, Marcin J.; Selvan, Myvizhi Esai; Fenyö, David; Foltz, Steven M.; Francis, Alicia; Gonzalez-Robles, Tania; Gümüş, Zeynep H.; Heiman, David; Holck, Michael; Hong, Runyu; Hu, Yingwei; Jaehnig, Eric J.; Ji, Jiayi; Jiang, Wen; Katsnelson, Lizabeth; Ketchum, Karen A.; Klein, Robert J.; Lei, Jonathan T.; Liang, Wen-Wei; Liao, Yuxing; Lindgren, Caleb M.; Ma, Weiping; Ma, Lei; MacCoss, Michael J.; Rodrigues, Fernanda Martins; McKerrow, Wilson; Nguyen, Ngoc; Oldroyd, Robert; Pilozzi, Alexander; Pugliese, Pietro; Reva, Boris; Rudnick, Paul; Ruggles, Kelly V.; Rykunov, Dmitry; Savage, Sara R.; Schnaubelt, Michael; Schraink, Tobias; Shi, Zhiao; Singhal, Deepak; Song, Xiaoyu; Storrs, Erik; Terekhanova, Nadezhda V.; Thangudu, Ratna R.; Thiagarajan, Mathangi; Wang, Liang-Bo; Wang, Joshua M.; Wang, Ying; Wen, Bo; Wu, Yige; Wyczalkowski, Matthew A.; Xin, Yi; Yao, Lijun; Yi, Xinpei; Zhang, Hui; Zhang, Qing; Zuhl, Maya; Getz, Gad; Ding, Li; Nesvizhskii, Alexey I.; Wang, Pei; Robles, Ana I.; Zhang, Bing; Payne, Samuel H.; Lazar, Alexander J.; Paulovich, Amanda G.; Colaprico, Antonio; Iavarone, Antonio; Chinnaiyan, Arul M.; Druker, Brian J.; Kumar-Sinha, Chandan; Newton, Chelsea J.; Huang, Chen; Mani, D. R.; Smith, Richard D.; Huntsman, Emily; Schadt, Eric E.; An, Eunkyung; Petralia, Francesca; Hostetter, Galen; Omenn, Gilbert S.; Cho, Hanbyul; Rodriguez, Henry; Zhang, Hui; Kolodziejczak, Iga; Johnson, Jared L.; Bavarva, Jasmin; Tan, Jimin; Rodland, Karin D.; Clauser, Karl R.; Krug, Karsten; Cantley, Lewis C.; Wiznerowicz, Maciej; Ellis, Matthew J.; Anurag, Meenakshi; Mesri, Mehdi; Gillette, Michael A.; Birrer, Michael J.; Ceccarelli, Michele; Dhanasekaran, Saravana M.; Edwards, Nathan; Tignor, Nicole; Babur, Özgün; Pugliese, Pietro; Gosline, Sara J. C.; Jewell, Scott D.; Satpathy, Shankha; Chowdhury, Shrabanti; Schürer, Stephan; Carr, Steven A.; Liu, Tao; Hiltke, Tara; Yaron, Tomer M.; Stathias, Vasileios; Liu, Wenke; Zhang, Xu; Song, Yizhe; Zhang, Zhen; Chan, Daniel W.

The Rhodoexplorer Platform for Red Algal Genomics and Whole-Genome Assemblies for Several Gracilaria Species

Lipinska, Agnieszka P; Krueger-Hadfield, Stacy A; Godfroy, Olivier; Dittami, Simon M; Ayres-Ostrock, Lígia; Bonthond, Guido; Brillet-Guéguen, Loraine; Coelho, Susana; Corre, Erwan; Cossard, Guillaume; Destombe, Christophe; Epperlein, Paul; Faugeron, Sylvain; Ficko-Blean, Elizabeth; Beltrán, Jessica; Lavaut, Emma; Le Bars, Arthur; Marchi, Fabiana; Mauger, Stéphane; Michel, Gurvan; Potin, Philippe; Scornet, Delphine; Sotka, Erik E; Weinberger, Florian; Oliveira, Mariana; Guillemin, Marie-Laure; Plastino, Estela M; Valero, Myriam

A comprehensive review of bioinformatics tools for chromatin loop calling

Liu, Li; Han, Kaiyuan; Sun, Huimin; Han, Lu; Gao, Dong; Xi, Qilemuge; Zhang, Lirong; Lin, Hao

De Novo Whole-Genome Sequencing of Two Pathogenic Pasteurella multocida Type D:6 Strains Isolated from Pigs

Livingstone, Morag; Jorgensen, Pernille; McCall, Margaret; Thomson, Jill; Longbottom, David

Incorporación de un pipeline informático para la identificación de mutaciones en secuenciación de DNA tumoral

Lorenzo Camacho, Valentina

Engineering microalgal chassis cells

Lu, Xuefeng; Hagemann, Martin; Liu, Jin; Shukla, Pratyoosh; Tan, Xiaoming

Rapid evolution of pre-zygotic reproductive barriers in allopatric populations

Mahilkar, Anjali; Nagendra, Prachitha; Venkataraman, Pavithra; Deshmukh, Saniya; Saini, Supreet

Rapid evolution of pre-zygotic reproductive barriers in allopatric populations

Mahilkar, Anjali; Nagendra, Prachitha; Venkataraman, Pavithra; Deshmukh, Saniya; Saini, Supreet

Species Delineation and Comparative Genomics within the Campylobacter ureolyticus Complex

Maki, Joel J.; Howard, Mondraya; Connelly, Sara; Pettengill, Matthew A.; Hardy, Dwight J.; Cameron, Andrew

Endosomal vesicle fusion machinery is involved with the contractile vacuole in Dictyostelium discoideum

Manna, Paul T.; Barlow, Lael D.; Ramirez-Macias, Inmaculada; Herman, Emily K.; Dacks, Joel B.

ELIXIR’s List of indicators, and other evidence, for monitoring performance and impact in a distributed data research infrastructure for the life sciences

Martin, Corinne; Sousoni, Despoina; Balsyte, Erika

Prévalence, identification et caractérisation des bactéries du genre Mycoplasma détectées dans les affections respiratoires équines

Martineau, Matthieu

The Archaeome’s Role in Colorectal Cancer: Unveiling the DPANN Group and Investigating Archaeal Functional Signatures

Mathlouthi, Nour El Houda; Belguith, Imen; Yengui, Mariem; Oumarou Hama, Hamadou; Lagier, Jean-Christophe; Ammar Keskes, Leila; Grine, Ghiles; Gdoura, Radhouane

Colorectal Cancer Archaeome: A Metagenomic Exploration, Tunisia

Mathlouthi, Nour El Houda; Oumarou Hama, Hamadou; Belguith, Imen; Charfi, Slim; Boudawara, Tahya; Lagier, Jean-Christophe; Ammar Keskes, Leila; Grine, Ghiles; Gdoura, Radhouane

Characterization and expression analysis of SnRK2, PYL, and ABF/ AREB/ ABI5 gene families in sweet potato

Mathura, Sarah R.; Sutton, Fedora; Bowrin, Valerie

Genome-wide identification, characterization, and expression analysis of the sweet potato (Ipomoea batatas [L.] Lam.) ARF, Aux/IAA, GH3, and SAUR gene families

Mathura, Sarah R.; Sutton, Fedora; Bowrin, Valerie

Genome-wide Identification of the Auxin Transporter Gene Families in Sweet Potato (Ipomoea batatas) and their Expression During Tuberization

Mathura, Sarah R.; Sutton, Fedora; Bowrin, Valerie

Low prevalence of germline TP53 and PALB2 mutations in unselected cohort of breast cancer patients from Brunei Darussalam

Matusin, Siti Nur Idayu; Lu, Zen Huat; Hamid, Mas Rina Wati Haji Abdul

The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

Mc Cartney, Ann; Formenti, Giulio; Mouton, Alice; De Panis, Diego; De Panis, Diego; Marins, Luisa; Leitao, Henrique; Diedericks, Genevieve; Kirangwa, Joseph; Morselli, Marco; Salces, Judit; Escudero, Nuria; Iannucci, Alessio; Natali, Chiara; Svardal, Hannes; Fernandez, Rosa; De Pooter, Tim; Joris, Geert; Strazisar, Mojca; Wood, Jo; Herron, Katie; Seehausen, Ole; Watts, Phillip; Shaw, Felix; Davey, Robert; Minotto, Alice; Fernandez Gonzalez, Jose Maria; Bohne, Astrid; Alegria, Carla; Alioto, Tyler; Alves, Paulo; Amorim, Isabel; Aury, Jean-Marc; Backstrom, Niclas; Baldrian, Petr; Ballarin, Loriano; Baltrunaite, Laima; Barta, Endre; BedHom, Bertrand; Belser, Caroline; Bergsten, Johannes; Bertrand, Laurie; Bilandija, Helena; Binzer-Panchal, Mahesh; Bista, Iliana; Blaxter, Mark; Borges, Paulo AV; Borges Dias, Guilherme; Bosse, Mirte; Brown, Tom; Bruggmann, Remy; Buena-Atienza, Elena; Burgin, Josephine; Buzan, Elena; Cariani, Alessia; Casadei, Nicolas; Chiara, Matteo; Chozas, Sergio; Ciampor, Fedor; Crottini, Angelica; Cruaud, Corinne; Cruz, Fernando; Dalen, Love; De Biase, Alessio; Campo, Javier; Delic, Teo; Dennis, Alice; Derks, Martijn FL; Diroma, Maria Angela; Djan, Mihajla; Duprat, Simone; Eleftheriadi, Klara; Feulner, Philine GD; Flot, Jean-Francois; Forni, Giobbe; Fosso, Bruno; Fournier, Pascal; Fournier-Chambrillon, Christine; Gabaldon, Toni; Garg, Shilpa; Gissi, Carmela; Giupponi, Luca; Gomez-Garrido, Jessica; Gonzalez, Josefa; Grilo, Miguel; Gruening, Bjoern; Guerin, Thomas; Guiglielmoni, Nadege; Gut, Marta; Haesler, Marcel; Hahn, Christoph; Halpern, Balint; Harrison, Peter; Heintz, Julia; Hindrikson, Maris; Hoglund, Jacob; Howe, Kerstin; Hughes, Graham; Istace, Benjamin; Cock, Mark; Jancekovic, Franc; Jonsson, Zophonias; Joye-Dind, Sagane; Koskimaki, Janne; Krystufek, Boris; Kubacka, Justyna; Kuhl, Heiner; Kusza, Szilvia; Labadie, Karine; Lahteenaro, Meri; Lantz, Henrik; Lavrinienko, Anton; Leclere, Lucas; Lopes, Ricardo Jorge; Madsen, Ole; Magdelenat, Ghislaine; Magoga, Giulia; Manousaki, Tereza; Mappes, Tapio; Marques, Joao Pedro; Martinez Redondo, Gemma; Maumus, Florian; McCarthy, Shane; Megens, Hendrik-Jan; Melo-Ferreira, Jose; Mendes, Sofia; Montagna, Matteo; Moreno, Joao; Mosbech, Mai-Britt; Moura, Monica; Musilova, Zuzana; Myers, Eugene; Nash, Will; Nater, Alexander; Nicholson, Pamela; Niell, Manuel; Nijland, Reindert; Noel, Benjamin; Noren, Karin; Oliveira, Pedro; Olsen, Remi-Andre; Ometto, Lino; Oomen, Rebekah; Ossowski, Stephan; Palinauskas, Vaidas; Palsson, Snaebjorn; Panibe, Jerome; Pauperio, Joana; Pavlek, Martina; Payen, Emilie; Pawlowska, Julia; Pellicer, Jaume; Pesole, Graziano; Pimenta, Joao; Pippel, Martin; Pirttila, Anna Maria; Poulakakis, Nikos; Rajan, Jeena; Rego, Ruben MC; Resendes, Roberto; Resl, Philipp; Riesgo, Ana; Rodin-Morch, Patrik; Soares, Andre ER; Rodriguez Fernandes, Carlos; Romeiras, Maria; Roxo, Guilherme; Ruber, Lukas; Ruiz-Lopez, Maria Jose; Saarma, Urmas; Silva, Luis; Sim-Sim, Manuela; Soler, Lucile; Sousa, Vitor; Sousa Santos, Carla; Spada, Alberto; Stefanovic, Milomir; Steger, Viktor; Stiller, Josefin; Stock, Matthias; Struck, Torsten Hugo; Sudasinghe, Hiranya; Tapanainen, Riikka; Tellgren-Roth, Christian; Trindade, Helena; Tukalenko, Yevhen; Urso, Ilenia; Vacherie, Benoit; Van Belleghem, Steven; Oers, Kees; Vargas-Chavez, Carlos; Velickovic, Nevena; Vella, Noel; Vella, Adriana; Vernesi, Cristiano; Vicente, Sara; Villa, Sara; Vinnere Pettersson, Olga; Volckaert, Filip AM; Voros, Judit; Wincker, Patrick; Winkler, Sylke; Ciofi, Claudio; Waterhouse, Robert; Mazzoni, Camila

Genomas dos fungos Trichoderma lentiforme e Trichoderma camerunense e a interação na cultura do tomateiro e com fitopatógenos

Medeiros, Carlos Alberto Albuquerque de

A Galaxy of informatics resources for MS-based proteomics

Mehta, Subina; Bernt, Matthias; Chambers, Matthew; Fahrner, Matthias; Föll, Melanie Christine; Gruening, Bjoern; Horro, Carlos; Johnson, James E.; Loux, Valentin; Rajczewski, Andrew T.; Schilling, Oliver; Vandenbrouck, Yves; Gustafsson, Ove Johan Ragnar; Thang, W. C. Mike; Hyde, Cameron; Price, Gareth; Jagtap, Pratik D.; Griffin, Timothy J.

Aircraft surveys for air eDNA: probing biodiversity in the sky

Métris, Kimberly L.; Métris, Jérémy

THE EVALUATION OF EXPRESSION OF EIF3 SUBUNITS AND RIBOSOMAL PROTEINS IN MICROGLIA DURING AGING IN WILD TYPE AND APP/PS1 MICE MODEL AND THE ASSESMENT OF EFFECT OF TOMIVOSERTIB ON EIF4E PHOSPHORYLATION

Missaghimamaghani, Olka

Candidate miRNAs from Oryza sativa for Silencing the Rice Tungro Viruses

Mohamed, Noor Amni; Ngah, Nik Muhammad Faris Nazmie Che; Abas, Azlan; Talip, Noraini; Sarian, Murni Nazira; Hamezah, Hamizah Shahirah; Harun, Sarahani; Bunawan, Hamidun

Construction and analysis of pseudogene-related ceRNA network in breast cancer

Mohebifar, Hossein; Sabbaghian, Amir; Farazmandfar, Touraj; Golalipour, Masoud

Intrasexual cuticular hydrocarbon dimorphism in a wasp sheds light on hydrocarbon biosynthesis genes in Hymenoptera

Moris, Victoria C.; Podsiadlowski, Lars; Martin, Sebastian; Oeyen, Jan Philip; Donath, Alexander; Petersen, Malte; Wilbrandt, Jeanne; Misof, Bernhard; Liedtke, Daniel; Thamm, Markus; Scheiner, Ricarda; Schmitt, Thomas; Niehuis, Oliver

The mitogenomes of Leptographium aureum, Leptographium sp., and Grosmannia fruticeta: expansion by introns

Mukhopadhyay, Jigeesha; Wai, Alvan; Hausner, Georg

CRISPRi screening identifies CASP8AP2 as an essential viability factor in lung cancer controlling tumor cell death via the AP-1 pathway

Myacheva, Ksenia; Walsh, Andrew; Riester, Marisa; Pelos, Giulia; Carl, Jane; Diederichs, Sven

Delayed boosting improves human antigen-specific Ig and B cell responses to the RH5.1/AS01_B malaria vaccine

Nielsen, Carolyn M.; Barrett, Jordan R.; Davis, Christine; Fallon, Jonathan K.; Goh, Cyndi; Michell, Ashlin R.; Griffin, Catherine; Kwok, Andrew; Loos, Carolin; Darko, Samuel; Laboune, Farida; Tekman, Mehmet; Diouf, Ababacar; Miura, Kazutoyo; Francica, Joseph R.; Ransier, Amy; Long, Carole A.; Silk, Sarah E.; Payne, Ruth O.; Minassian, Angela M.; Lauffenburger, Douglas A.; Seder, Robert A.; Douek, Daniel C.; Alter, Galit; Draper, Simon J.

Applying Deep Learning Techniques to Assist Bioinformatics Researchers in Analysis Pipeline Composition - ProQuest

Book of Abstracts of the 1st Colloquium for... | Documents | F1000Research

Characterization of the Italian population of Ciborinia camelliae

Harmful Algal Bloom Toxin Aerosol Exposure and Airway Inflammation - ProQuest

Improving the Human Genome Annotation Using Integrative Analysis and Deep Learning Methods - ProQuest

Innovative Approach to Fight Tuberculosis and Malaria Targeting the Extraordinary PLP Synthase Macromolecular Complex - ProQuest

The Mitochondrial Electron Transport Chain Modulates Expression and Secretion of the Lipoprotein APOE  - ProQuest

New biomarker approach for RKN resistance in Prunus progenies | International Society for Horticultural Science

Proceedings of the Joint 3rd International Conference on Bioinformatics and Data Science (ICBDS 2022), ISBN 9789464631630 - Better Read Than Dead Bookstore Newtown

Shigella induces epigenetic reprogramming of zebrafish neutrophils | Science Advances

Structural and Functional Investigation of the Sam68/p300 Protein Complex

β-Cell–Specific E2f1 Deficiency Impairs Glucose Homeostasis, β-Cell Identity, and Insulin Secretion

Oger, Frédérik; Bourouh, Cyril; Friano, Marika Elsa; Courty, Emilie; Rolland, Laure; Gromada, Xavier; Moreno, Maeva; Carney, Charlène; Rabhi, Nabil; Durand, Emmanuelle; Amanzougarene, Souhila; Berberian, Lionel; Derhourhi, Mehdi; Blanc, Etienne; Hannou, Sarah Anissa; Denechaud, Pierre-Damien; Benfodda, Zohra; Meffre, Patrick; Fajas, Lluis; Kerr-Conte, Julie; Pattou, François; Froguel, Philippe; Pourcet, Benoit; Bonnefond, Amélie; Collombat, Patrick; Annicotte, Jean-Sébastien

Hybrid Genome Assembly of Short and Long Reads in Galaxy

Ohta, Tazro; Shiwa, Yuh

RPS6 transcriptional modulation in neural tissues of Nauphoeta cinerea during streptozotocin-associated sugar metabolism impairment.

Olagoke, Olawande C.; Segatto, Ana L. A.; Afolabi, Blessing A.; Ardisson-Araujo, Daniel; Aschner, Michael; Rocha, João B. T.

Cocoa apoplastome contains defense proteins against pathogens

Oliveira, Ms Ivina Barbosa de; Moura, Mr Igor Moutinho; Santana, Dr Juliano Oliveira; Gramacho, Dr Karina Peres; Alves, Ms Saline dos Santos; Ferreira, Dr Monaliza Macêdo; Santos, Dr Ariana Silva; Novais, Prof Diogo Pereira Silva de; Pirovani, Dr Carlos Priminho

Identification and Pathogenicity of Fusarium Isolated from Soybean in Poland

Olszak-Przybyś, Hanna; Korbecka-Glinka, Grażyna; Patkowska, Elżbieta

Acemannan ameliorates STZ-activated diabetes by attenuating high glucose via inhibiting inflammatory cytokines and apoptosis pathway

Omer, Asma B.; Altayb, Hisham N.; Al-Abbasi, Fahad A.; Gupta, Gaurav; Ahmed, Mohammed Muqtader; Alghamdi, Amira M.; Alzarea, Sami I.; Sayyed, Nadeem; Nadeem, Muhammad Shahid; Kazmi, Imran

Increasing complexity of opsin expression across stomatopod development

Palecanda, Sitara; Steck, Mireille; Porter, Megan L.

Molecular Evolution of Malacostracan Short Wavelength Sensitive Opsins

Palecanda, Sitara; Madrid, Elizabeth; Porter, Megan L.

SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing

Pan, Shaojun; Zhao, Xing-Ming; Coelho, Luis Pedro

The non-classical major histocompatibility complex II protein SLA-DM is crucial for African swine fever virus replication

Pannhorst, Katrin; Carlson, Jolene; Hölper, Julia E.; Grey, Finn; Baillie, John Kenneth; Höper, Dirk; Wöhnke, Elisabeth; Franzke, Kati; Karger, Axel; Fuchs, Walter; Mettenleiter, Thomas C.

Bioprospecting phytochemicals of Rosmarinus officinalis L. for targeting SARS-CoV-2 main protease (Mpro): a computational study

Patel, Unnati; Desai, Krishna; Dabhi, Ranjitsinh C.; Maru, Jayesh J.; Shrivastav, Pranav S.

Transcriptional Comparison of Human and Murine Retinal Neovascularization

Pauleikhoff, Laurenz; Boneva, Stefaniya; Boeck, Myriam; Schlecht, Anja; Schlunck, Günther; Agostini, Hansjürgen; Lange, Clemens; Wolf, Julian

Fast proliferating and slowly migrating non-small cell lung cancer cells are vulnerable to decitabine and retinoic acid combinatorial treatment

Pelos, Giulia; Riester, Marisa; Pal, Jagriti; Myacheva, Ksenia; Moneke, Isabelle; Rotondo, John Charles; Lübbert, Michael; Diederichs, Sven

Molekulare Mechanismen der pharmakologischen Resistenz kolorektaler Karzinomzelllinien gegen das Chemotherapieregime FOLFIRI

Peschel, Christiane

Molecular Characterizations of the Coagulase-Negative Staphylococci Species Causing Urinary Tract Infection in Tanzania: A Laboratory-Based Cross-Sectional Study

Phillip, Shukrani; Mushi, Martha F.; Decano, Arun Gonzales; Seni, Jeremiah; Mmbaga, Blandina T.; Kumburu, Happiness; Konje, Eveline T.; Mwanga, Joseph R.; Kidenya, Benson R.; Msemwa, Betrand; Gillespie, Stephen; Maldonado-Barragan, Antonio; Sandeman, Alison; Sabiti, Wilber; Holden, Mathew T. G.; Mshana, Stephen E.

Description of eight new mitochondrial genomes for the genus Neoarius and phylogenetic considerations for the family Ariidae (Siluriformes)

Pimentel, Luiz Guilherme Pereira; Silva, Iuri Batista; Rodrigues-Oliveira, Igor Henrique; Pasa, Rubens; Menegídio, Fabiano Bezerra; Kavalco, Karine Frehner

A genomic platform for surveillance and antigen discovery in Plasmodium spp. using long-read amplicon sequencing

Plaza, David Fernando; Zerebinski, Julia; Broumou, Ioanna; Lautenbach, Maximilian Julius; Ngasala, Billy; Sundling, Christopher; Färnert, Anna

Introducción alas nuevas tecnologías: MinION, secuenciación en tiempo real

Plazas Ávila, María de la O.; Arrones Olmo, Andrea; Vilanova Navarro, Santiago

MetaNovo: An open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets

Potgieter, Matthys G.; Nel, Andrew J. M.; Fortuin, Suereta; Garnett, Shaun; Wendoh, Jerome M.; Tabb, David L.; Mulder, Nicola J.; Blackburn, Jonathan M.

Whole genome analysis of Escherichia coli and Staphylococcus aureus isolated from foods of animal origin

P.t, Waseem Mirsab

Comparative genomics and virulome analysis reveal unique features associated with clinical strains of Klebsiella pneumoniae and Klebsiella quasipneumoniae from Trinidad, West Indies

Pustam, Aarti; Jayaraman, Jayaraj; Ramsubhag, Adesh

STAT3 signaling induced by the IL-6 family of cytokines modulates angiogenesis

Rapp, Julian; Jung, Malte; Klar, Rhena F. U.; Wolf, Julian; Arnold, Jakob; Gorka, Oliver; Groß, Olaf; Lange, Clemens; Agostini, Hansjürgen; Schlunck, Günther; Bucher, Felicitas

Metagenomic Analysis Of Human Gut Microbiota

Rasheed, Muhammad Moazzam Bin; Rana, Marvah Mehmood; Sarfraz, Mian Talha; Shamim, Sana; Begum, Irshad; Khan, Safia; Jahan, Dr Noor; Taj, Muhammad Hassan; Aziz, Muhammad Adil

Analyse des Replikationszyklus von nicht-melanozytären Hautkrebs-assoziierten beta-humanen Papillomviren in humanen Keratinozyten

Rehm, Tina Melanie

Characterization of the microbiota dynamics associated with Moniliophthora roreri, causal agent of cocoa frosty pod rot disease, reveals new viral species

Reyes, Brayan Maudiel Diaz; Fonseca, Paula Luize Camargos; Heming, Neander Marcel; Conceição, Lucas Barbosa de Amorim; Nascimento, Katiucia Ticila de Souza; Gramacho, Karina Peres; Arevalo-Gardini, Enrique; Pirovani, Carlos Priminho; Aguiar, Eric Roberto Guimarães Rocha

Activator-blocker model of transcriptional regulation by pioneer-like factors

Riesle, Aileen Julia; Gao, Meijiang; Rosenblatt, Marcus; Hermes, Jacques; Hass, Helge; Gebhard, Anna; Veil, Marina; Grüning, Björn; Timmer, Jens; Onichtchouk, Daria

Resin acids play key roles in shaping microbial communities during degradation of spruce bark

Ristinmaa, Amanda Sörensen; Tafur Rangel, Albert; Idström, Alexander; Valenzuela, Sebastian; Kerkhoven, Eduard J.; Pope, Phillip B.; Hasani, Merima; Larsbrink, Johan

A YAP/TAZ–ARHGAP29–RhoA Signaling Axis Regulates Podocyte Protrusions and Integrin Adhesions

Rogg, Manuel; Maier, Jasmin I.; Helmstädter, Martin; Sammarco, Alena; Kliewe, Felix; Kretz, Oliver; Weißer, Lisa; Van Wymersch, Clara; Findeisen, Karla; Koessinger, Anna L.; Tsoy, Olga; Baumbach, Jan; Grabbert, Markus; Werner, Martin; Huber, Tobias B.; Endlich, Nicole; Schilling, Oliver; Schell, Christoph

DNA ultra-sensitive quantification, a technology for studying HIV unintegrated linear DNA

Roux, Hélène Marie; Figueiredo, Suzanne; Sareoua, Lucas; Salmona, Maud; Hamroune, Juliette; Adoux, Lucie; Migraine, Julie; Hance, Allan; Clavel, François; Cheynier, Rémi; Dutrieux, Jacques

Computational identification and characterization of vascular wilt pathogen (Fusarium oxysporum f. sp. lycopersici) CAZymes in tomato xylem sap

Roy, Abhijeet; Kalita, Barsha; Jayaprakash, Aiswarya; Kumar, Amrendra; Lakshmi, P. T. V.

Detection of domestic cat hepadnavirus by next-generation sequencing and epidemiological survey in Japan

SAKAMOTO, Haruka; ITO, Genta; GOTO-KOSHINO, Yuko; SAKAMOTO, Megumi; NISHIMURA, Ryohei; MOMOI, Yasuyuki

Heteroresistance to Colistin in Clinical Isolates of Klebsiella pneumoniae Producing OXA-48

Sánchez-León, Irene; García-Martínez, Teresa; Diene, Seydina M.; Pérez-Nadales, Elena; Martínez-Martínez, Luis; Rolain, Jean-Marc

Characterization of the Italian population of Ciborinia camelliae

Saracchi, M.; Kunova, A.; Valenti, I.; Degradi, L.; Pizzatti, C.; Corneo, A.; Cortesi, P.; Pasquali, M.

Glycation Interferes with the Expression of Sialyltransferases and Leads to Increased Polysialylation in Glioblastoma Cells

Schildhauer, Paola; Selke, Philipp; Staege, Martin S.; Harder, Anja; Scheller, Christian; Strauss, Christian; Horstkorte, Rüdiger; Scheer, Maximilian; Leisz, Sandra

Integrative meta-omics in Galaxy and beyond

Schiml, Valerie C.; Delogu, Francesco; Kumar, Praveen; Kunath, Benoit; Batut, Bérénice; Mehta, Subina; Johnson, James E.; Grüning, Björn; Pope, Phillip B.; Jagtap, Pratik D.; Griffin, Timothy J.; Arntzen, Magnus Ø.

CRISPR-Cas9 Library Screening Identifies Novel Molecular Vulnerabilities in KMT2A-Rearranged Acute Lymphoblastic Leukemia

Schneider, Pauline; Wander, Priscilla; Arentsen-Peters, Susan T. C. J. M.; Vrenken, Kirsten S.; Rockx-Brouwer, Dedeke; Adriaanse, Fabienne R. S.; Hoeve, Veerle; Paassen, Irene; Drost, Jarno; Pieters, Rob; Stam, Ronald W.

Mouse models of pediatric high-grade gliomas with MYCN amplification reveal intratumoral heterogeneity and lineage signatures

Schoof, Melanie; Godbole, Shweta; Albert, Thomas K.; Dottermusch, Matthias; Walter, Carolin; Ballast, Annika; Qin, Nan; Olivera, Marlena Baca; Göbel, Carolin; Neyazi, Sina; Holdhof, Dörthe; Kresbach, Catena; Peter, Levke-Sophie; Epplen, Gefion Dorothea; Thaden, Vanessa; Spohn, Michael; Blattner-Johnson, Mirjam; Modemann, Franziska; Mynarek, Martin; Rutkowski, Stefan; Sill, Martin; Varghese, Julian; Afflerbach, Ann-Kristin; Eckhardt, Alicia; Münter, Daniel; Verma, Archana; Struve, Nina; Jones, David T. W.; Remke, Marc; Neumann, Julia E.; Kerl, Kornelius; Schüller, Ulrich

Eomes restricts Brachyury functions at the onset of mouse gastrulation

Schüle, Katrin M.; Weckerle, Jelena; Probst, Simone; Wehmeyer, Alexandra E.; Zissel, Lea; Schröder, Chiara M.; Tekman, Mehmet; Kim, Gwang-Jin; Schlägl, Inga-Marie; Sagar; Arnold, Sebastian J.

Identification of Mosquito-Specific Viruses and Their Role in Virus-Virus-Host Interactions

Schulze, Jonny

Neonatal immune challenge poses a sex-specific risk for epigenetic microglial reprogramming and behavioral impairment

Schwabenland, Marius; Mossad, Omar; Sievert, Annika; Peres, Adam G.; Ringel, Elena; Baasch, Sebastian; Kolter, Julia; Cascone, Giulia; Dokalis, Nikolaos; Vlachos, Andreas; Ruzsics, Zsolt; Henneke, Philipp; Prinz, Marco; Blank, Thomas

The regulation of glutathione s-transferases by gibberellic acid application in salt treated maize leaves

Seckin Dinler, Burcu; Cetinkaya, Hatice; Secgin, Zafer

Genomic, Molecular, and Phenotypic Characterization of Arthrobacter sp. OVS8, an Endophytic Bacterium Isolated from and Contributing to the Bioactive Compound Content of the Essential Oil of the Medicinal Plant Origanum vulgare L.

Semenzato, Giulia; Del Duca, Sara; Vassallo, Alberto; Bechini, Angela; Calonico, Carmela; Delfino, Vania; Berti, Fabiola; Vitali, Francesco; Mocali, Stefano; Frascella, Angela; Emiliani, Giovanni; Fani, Renato

A biologist’s guide to planning and performing quantitative bioimaging experiments

Senft, Rebecca A.; Diaz-Rohrer, Barbara; Colarusso, Pina; Swift, Lucy; Jamali, Nasim; Jambor, Helena; Pengo, Thomas; Brideau, Craig; Llopis, Paula Montero; Uhlmann, Virginie; Kirk, Jason; Gonzales, Kevin Andrew; Bankhead, Peter; Iii, Edward L. Evans; Eliceiri, Kevin W.; Cimini, Beth A.

Experience of Klebsiella pneumoniae genome sequencing using the short read method on the Illumina platform

Shaforost, A. S.; Ziatskov, A. A.; Voropaev, E. V.; Osipkina, O. V.; Voropaeva, A. V.; Bonda, N. A.; Stoma, I. O.

Structure and Energetics of Serum Protein Complex of Tea Adulterant Dye Bismarck Brown Y using Experimental and Computational Methods

Shankar, Manwi; Rani, Majji Sai Sudha; Gopi, Priyanka; P, Arsha; Pandya, Prateek

Bridging the gap in African biodiversity genomics and bioinformatics

Sharaf, Abdoallah; Ndiribe, Charlotte C.; Omotoriogun, Taiwo Crossby; Abueg, Linelle; Badaoui, Bouabid; Badiane Markey, Fatu J.; Beedessee, Girish; Diouf, Diaga; Duru, Vincent C.; Ebuzome, Chukwuike; Eziuzor, Samuel C.; Jaufeerally Fakim, Yasmina; Formenti, Giulio; Ghanmi, Nidhal; Guerfali, Fatma Zahra; Houaga, Isidore; Ideozu, Justin Eze; Katee, Sally Mueni; Khayi, Slimane; Kuja, Josiah O.; Kwon-Ndung, Emmanuel Hala; Marks, Rose A.; Moila, Acclaim M.; Mungloo-Dilmohamud, Zahra; Muzemil, Sadik; Nigussie, Helen; Osuji, Julian O.; Ras, Verena; Tchiechoua, Yves H.; Zoclanclounon, Yedomon Ange Bovys; Tolley, Krystal A.; Ziyomo, Cathrine; Mapholi, Ntanganedzeni; Muigai, Anne W. T.; Djikeng, Appolinaire; Ebenezer, ThankGod Echezona

Volatile Organic Compounds Emitted by the Biocontrol Agent Pythium oligandrum Contribute to Ginger Plant Growth and Disease Resistance

Sheikh, Taha Majid Mahmood; Zhou, Dongmei; Ali, Haider; Hussain, Sarfraz; Wang, Nan; Chen, Siqiao; Zhao, Yishen; Wen, Xian; Wang, Xiaoyu; Zhang, Jinfeng; Wang, Lunji; Deng, Sheng; Feng, Hui; Raza, Waseem; Fu, Pengxiao; Peng, Hao; Wei, Lihui; Daly, Paul

Modeling bile duct ischemia and reoxygenation injury in human cholangiocyte organoids for screening of novel cholangio-protective agents

Shi, Shaojun; Roest, Henk P.; Bosch, Thierry P. P.; Bijvelds, Marcel J. C.; Boehnert, Markus U.; Jonge, Jeroen; Dekker, Sven O.; Vries, Antoine A. F.; Jonge, Hugo R.; Verstegen, Monique M. A.; Laan, Luc J. W.

Return of the Tbx5; lineage-tracing reveals ventricular cardiomyocyte-like precursors in the injured adult mammalian heart

Siatra, Panagiota; Vatsellas, Giannis; Chatzianastasiou, Athanasia; Balafas, Evangelos; Manolakou, Theodora; Papapetropoulos, Andreas; Agapaki, Anna; Mouchtouri, Eleni-Taxiarchia; Ruchaya, Prashant J.; Korovesi, Artemis G.; Mavroidis, Manolis; Thanos, Dimitrios; Beis, Dimitris; Kokkinopoulos, Ioannis

Galaxy for open-source computational drug discovery solutions

Singh Gaur, Anamika; Nagamani, Selvaraman; Priyadarsinee, Lipsa; Mahanta, Hridoy J.; Parthasarathi, Ramakrishnan; Sastry, G. Narahari

Viruses participate in the organomineralization of travertines

Słowakiewicz, Mirosław; Perri, Edoardo; Tagliasacchi, Ezher; Działak, Paweł; Borkowski, Andrzej; Gradziński, Michał; Kele, Sándor; Tucker, Maurice E.

Proceedings of the Joint 3rd International Conference on Bioinformatics and Data Science (ICBDS 2022)

Somashekhar, R.; Bagchi, Preenon; Rajesh, T. S.; Hill, Richard; Rossi, Kathryn

Genome-wide screening and characterization of long noncoding RNAs involved in flowering/bolting of Lactuca sativa

Soorni, Aboozar; Karimi, Marzieh; Al Sharif, Batoul; Habibi, Khashayar

A Chromosome-Level Reference Genome for the Black-Legged Kittiwake (Rissa tridactyla), a Declining Circumpolar Seabird

Sozzoni, Marcella; Ferrer Obiol, Joan; Formenti, Giulio; Tigano, Anna; Paris, Josephine R; Balacco, Jennifer R; Jain, Nivesh; Tilley, Tatiana; Collins, Joanna; Sims, Ying; Wood, Jonathan; Benowitz-Fredericks, Z Morgan; Field, Kenneth A; Seyoum, Eyuel; Gatt, Marie Claire; Léandri-Breton, Don-Jean; Nakajima, Chinatsu; Whelan, Shannon; Gianfranceschi, Luca; Hatch, Scott A; Elliott, Kyle H; Shoji, Akiko; Cecere, Jacopo G; Jarvis, Erich D; Pilastro, Andrea; Rubolini, Diego

Comparative Analysis of Bioactive Compounds in Two Globe Artichoke Ecotypes Sanitized and Non-Sanitized from Viral Infections

Spanò, Roberta; Fortunato, Stefania; Linsalata, Vito; D’Antuono, Isabella; Cardinali, Angela; Pinto, Maria Concetta; Mascia, Tiziana

Analysis of biofilm formation in nosocomial Stenotrophomonas maltophilia isolates collected in Bulgaria: An 11-year study (2011–2022)

Strateva, Tanya; Trifonova, Angelina; Sirakov, Ivo; Borisova, Dayana; Stancheva, Mikaela; Keuleyan, Emma; Setchanova, Lena; Peykov, Slavil

Genotypic and phenotypic insights into virulence factors of nosocomial Stenotrophomonas maltophilia isolates collected in Bulgaria (2011–2022)

Strateva, Tanya; Trifonova, Angelina; Stratev, Alexander; Peykov, Slavil

Phenotypic and Molecular Characteristics of Carbapenem-Resistant Acinetobacter baumannii Isolates from Bulgarian Intensive Care Unit Patients

Strateva, Tanya V.; Sirakov, Ivo; Stoeva, Temenuga J.; Stratev, Alexander; Peykov, Slavil

Genetic background of neomycin resistance in clinical Escherichia coli isolated from Danish pig farms

Subramani, Prabha; Menichincheri, Gaia; Pirolo, Mattia; Arcari, Gabriele; Kudirkiene, Egle; Polani, Riccardo; Carattoli, Alessandra; Damborg, Peter; Guardabassi, Luca

SARS-CoV-2 spike protein diversity at an intra-host level, among SARS-CoV-2 infected individuals in South Africa, 2020 to 2022

Subramoney, Kathleen; Mtileni, Nkhensani; Davis, Ashlyn; Giandhari, Jennifer; Tegally, Houriiyah; Wilkinson, Eduan; Naidoo, Yeshnee; Ramphal, Yajna; Pillay, Sureshnee; Ramphal, Upasana; Simane, Andiswa; Reddy, Bhaveshan; Mashishi, Bonolo; Mbenenge, Nonhlanhla; Oliveira, Tulio de; Fielding, Burtram C.; Treurnicht, Florette K.

In-silico transcriptome analysis of antibiotic-treated Mycobacterium tuberculosis identifies novel antibiotic resistance factors

Sundar, Shobana

Genomic Epidemiological Analysis of Antimicrobial-Resistant Bacteria with Nanopore Sequencing

Suzuki, Masato; Hashimoto, Yusuke; Hirabayashi, Aki; Yahara, Koji; Yoshida, Mitsunori; Fukano, Hanako; Hoshino, Yoshihiko; Shibayama, Keigo; Tomita, Haruyoshi

Genomic analysis and biological characterization of a novel Schitoviridae phage infecting Vibrio alginolyticus

Tajuddin, Sofiah; Khan, Asif M.; Chong, Li Chuin; Wong, Chuan Loo; Tan, Jia Sen; Ina-Salwany, Md Yasin; Lau, Han Yih; Ho, Kok Lian; Mariatulqabtiah, Abdul Razak; Tan, Wen Siang

WHIRLY proteins maintain seed longevity by effects on seed oxygen signalling during imbibition

Taylor, Rachel E.; Waterworth, Wanda; West, Christopher E; Foyer, Christine H.

AGO-hook domény v metylaci DNA řízené malými RNA u Arabidopsis thaliana

Teznerová, Kateřina

Draft genome sequence of Amycolatopsis camponoti RTGN1, a bacterial endophyte isolated from Alnus glutinosa root nodules

Thompson, Ryan Michael; Fox, Edward M.; Montero-Calasanz, Maria del Carmen

Draft genome sequence of Streptomyces poriferorum RTGN2, a bacterial endophyte isolated from Alnus glutinosa root nodules

Thompson, Ryan Michael; Fox, Edward M.; Montero-Calasanz, Maria del Carmen

Combination of two rare mutations in the SARS-CoV-2 M gene in patients with severe and prolonged COVID-19

Trifonova, Angelina; Syarov, Atanas; Takov, Svetlomir; Angelov, Krassimir; Vazharova, Radoslava; Terzieva, Velislava

The first transcriptomic analyses of fruits and cladodes for comparison between three species of Opuntia

Valadez-Moctezuma, Ernestina; Samah, Samir; Mascorro-Gallardo, J. Oscar; Marbán-Mendoza, Nahum; Aranda-Osorio, Gilberto; Flores-Girón, Emmanuel; Brito-Nájera, Guadalupe; O, José Luis

The de novo transcriptome assembly of Agave angustifolia Haw, mining for carbohydrates and cellulose synthesis genes profiling, and molecular markers development

Valadez-Moctezuma, Ernestina; Samah, Samir; Mascorro-Gallardo, J. Oscar; Reynoso, José J. López; Marbán-Mendoza, Nahum; Aranda-Osorio, Gilberto; Brito-Nájera, Guadalupe

How does particulate matter affect plant transcriptome and microbiome?

Vergata, Chiara; Contaldi, Felice; Baccelli, Ivan; Basso, Marcos Fernando; Santini, Alberto; Pecori, Francesco; Buti, Matteo; Mengoni, Alessio; Vaccaro, Francesca; Moura, Barbara Basso; Ferrini, Francesco; Martinelli, Federico

Identification of Taxa and Functional Pathway Information of Mycobacterium tuberculosis Microbiome and High Throughput Simulation Studies with Mycobacteriophage

Verma, Divya; Murthy, I. A. Shylesh; Bagchi, Preenon

A rabies-related lyssavirus from a Nycticeinops schlieffeni bat with neurological signs, South Africa

Viljoen, Natalie; Ismail, Arshad; Weyer, Jacqueline; Markotter, Wanda

Employing Genome Mining to Unveil a Potential Contribution of Endophytic Bacteria to Antimicrobial Compounds in the Origanum vulgare L. Essential Oil

Vitali, Francesco; Frascella, Arcangela; Semenzato, Giulia; Del Duca, Sara; Palumbo Piccionello, Antonio; Mocali, Stefano; Fani, Renato; Emiliani, Giovanni

Terpene synthase gene family organisation in Melaleuca alternifolia and its influence on chemotype

Voelker, Julia

The terpene synthase genes of Melaleuca alternifolia (tea tree) and comparative gene family analysis among Myrtaceae essential oil crops

Voelker, Julia; Mauleon, Ramil; Shepherd, Mervyn

Su(Hw) interacts with Combgap to establish long-range chromatin contacts

Vorobyeva, Nadezhda E.; Krasnov, Alexey N.; Erokhin, Maksim; Chetverina, Darya; Mazina, Marina

Multi-Omics Analysis of Vicia cracca Responses to Chronic Radiation Exposure in the Chernobyl Exclusion Zone

Voronezhskaya, Viktoria; Volkova, Polina; Bitarishvili, Sofia; Shesterikova, Ekaterina; Podlutskii, Mikhail; Clement, Gilles; Meyer, Christian; Duarte, Gustavo Turqueto; Kudin, Maksim; Garbaruk, Dmitrii; Turchin, Larisa; Kazakova, Elizaveta

In-depth genetic characterization of the SARS-CoV-2 pandemic in a two-year frame in North Macedonia using second and third generation sequencing technologies

Vukovikj, Maja; Boshevska, Golubinka; Janchevska, Elizabeta; Buzharova, Teodora; Preshova, Ardian; Simova, Milica; Peshnacka, Aneta; Kocinski, Dragan; Kuzmanovska, Gordana; Memeti, Shaban; Gjorgoski, Icko

Morpho-functional Characterisation of Cœlomocytes in the Aquacultivated Sea Cucumber Holothuria Scabra: From Cell Diversity to Transcriptomic Immune Response

Wambreuse, Noé; Caulier, Guillaume; Eeckhaut, Igor; Borrello, Laura; Bureau, Fabrice; Fievez, Laurence; Delroisse, Jérôme

A systems-level mass spectrometry-based technique for accurate and sensitive quantification of the RNA cap epitranscriptome

Wang, Jin; Chew, Bing Liang Alvin; Lai, Yong; Dong, Hongping; Xu, Luang; Liu, Yu; Fu, Xin-Yuan; Lin, Zhenguo; Shi, Pei-Yong; Lu, Timothy K.; Luo, Dahai; Jaffrey, Samie R.; Dedon, Peter C.

The histone acetyltransferase KAT6A is recruited to unmethylated CpG islands via a DNA binding winged helix domain

Weber, Lisa Marie; Jia, Yulin; Stielow, Bastian; Gisselbrecht, Stephen S; Cao, Yinghua; Ren, Yanpeng; Rohner, Iris; King, Jessica; Rothman, Elisabeth; Fischer, Sabrina; Simon, Clara; Forné, Ignasi; Nist, Andrea; Stiewe, Thorsten; Bulyk, Martha L; Wang, Zhanxin; Liefke, Robert

Analysis of RNA Sequences and Modifications Using NASE

Wein, Samuel

Targeted and explorative profiling of kallikrein proteases and global proteome biology of pancreatic ductal adenocarcinoma, chronic pancreatitis, and normal pancreas highlights disease-specific proteome remodelling

Werner, Janina; Bernhard, Patrick; Cosenza-Contreras, Miguel; Pinter, Niko; Fahrner, Matthias; Pallavi, Prama; Eberhard, Johannes; Bronsert, Peter; Rückert, Felix; Schilling, Oliver

Inadvertent human genomic bycatch and intentional capture raise beneficial applications and ethical concerns with environmental DNA

Whitmore, Liam; McCauley, Mark; Farrell, Jessica A.; Stammnitz, Maximilian R.; Koda, Samantha A.; Mashkour, Narges; Summers, Victoria; Osborne, Todd; Whilde, Jenny; Duffy, David J.

Discovery and biosynthetic assessment of 'Streptomyces ortus' sp. nov. isolated from a deep-sea sponge

Williams, Sam E.; Back, Catherine R.; Best, Eleanor; Mantell, Judith; Stach, James E. M.; Williams, Tom A.; Race, Paul R.; Curnow, Paul

EODIE — Earth Observation Data Information Extractor

Wittke, Samantha; Fouilloux, Anne; Lehti, Petteri; Varho, Juuso; Kivimäki, Arttu; Karhu, Maiju; Karjalainen, Mika; Vaaja, Matti; Puttonen, Eetu

Transcriptional Profiling Identifies Prognostic Gene Signatures for Conjunctival Extranodal Marginal Zone Lymphoma

Wolf, Julian; Reinhard, Thomas; Hajdu, Rozina Ida; Schlunck, Günther; Auw-Haedrich, Claudia; Lange, Clemens

APOE expression and secretion are modulated by mitochondrial dysfunction

Wynne, Meghan E; Ogunbona, Oluwaseun; Lane, Alicia R; Gokhale, Avanti; Zlatic, Stephanie A; Xu, Chongchong; Wen, Zhexing; Duong, Duc M; Rayaprolu, Sruti; Ivanova, Anna; Ortlund, Eric A; Dammer, Eric B; Seyfried, Nicholas T; Roberts, Blaine R; Crocker, Amanda; Shanbhag, Vinit; Petris, Michael; Senoo, Nanami; Kandasamy, Selvaraju; Claypool, Steven Michael; Barrientos, Antoni; Wingo, Aliza; Wingo, Thomas S; Rangaraju, Srikant; Levey, Allan I; Werner, Erica; Faundez, Victor

Reprogramming of the transcriptome after heat stress mediates heat hormesis in Caenorhabditis elegans

Xu, Fan; Li, Ruoyao; Gromoff, Erika D.; Drepper, Friedel; Knapp, Bettina; Warscheid, Bettina; Baumeister, Ralf; Qi, Wenjing

DIET-like mutualism of Geobacter and methanogens at specific electrode potential boosts production of both methane and hydrogen from propionate

Yan, Yuqing; Zhang, Jiayao; Tian, Lili; Yan, Xuejun; Du, Lin; Leininger, Aaron; Zhang, Mou; Li, Nan; Ren, Zhiyong Jason; Wang, Xin

SARS-CoV-2 genomic surveillance in wastewater as a model for monitoring evolution of endemic viruses

Yousif, Mukhlid; Rachida, Said; Taukobong, Setshaba; Ndlovu, Nkosenhle; Iwu-Jaja, Chinwe; Howard, Wayne; Moonsamy, Shelina; Mhlambi, Nompilo; Gwala, Sipho; Levy, Joshua I.; Andersen, Kristian G.; Scheepers, Cathrine; Gottberg, Anne; Wolter, Nicole; Bhiman, Jinal N.; Amoako, Daniel Gyamfi; Ismail, Arshad; Suchard, Melinda; McCarthy, Kerrigan

GRACE: a comprehensive web-based platform for integrative single-cell transcriptome analysis

Yu, Hao; Wang, Yuqing; Zhang, Xi; Wang, Zheng

Exploring Scutellaria baicalensis bioactives as EGFR tyrosine kinase inhibitors: Cheminformatics and molecular docking studies

Yusuf, Amina J.; Adegboyega, Abayomi E.; Yakubu, Abdulbasit H.; Johnson, Grace I.; Asomadu, Rita O.; Adeduro, Mary N.; Chukwuma, Ifeoma F.; Ugwah-Oguejiofor, Chinenye J.; Okoh, Olayinka S.; Johnson, Titilayo O.

PATTERNS OF NATURAL SELECTION ASSOCIATED WITH TROPISM SHIFTS IN ANIMAL CORONAVIRUS GENOMES

Zehr, Jordan

Whole-genome sequence and mass spectrometry study of the snow blight fungus Phacidium infestans (Karsten) DSM 5139 growing at freezing temperatures

Zerouki, C.; Chakraborty, K.; Kuittinen, S.; Pappinen, A.; Turunen, O.

NFATc1 Is a Central Mediator of EGFR-Induced ARID1A Chromatin Dissociation During Acinar Cell Reprogramming

Zhang, Zhe; Wang, Xin; Hamdan, Feda H.; Likhobabina, Anna; Patil, Shilpa; Aperdannier, Lena; Sen, Madhobi; Traub, Jacobe; Neesse, Albrecht; Fischer, André; Papantonis, Argyris; Singh, Shiv K.; Ellenrieder, Volker; Johnsen, Steven A.; Hessmann, Elisabeth

Toxic effects and molecular mechanisms of estuarian crustaceans (Scylla paramamosain) exposed to five commonly used benzophenones

Zhou, Yi-Lian; Dong, Wei-Ren; Shu, Miao-An

A Roadmap for the Human Gut Cell Atlas

Zilbauer, Matthias; James, Kylie R.; Kaur, Mandeep; Pott, Sebastian; Li, Zhixin; Burger, Albert; Thiagarajah, Jay R.; Burclaff, Joseph; Jahnsen, Frode L.; Perrone, Francesca; Ross, Alexander D.; Matteoli, Gianluca; Stakenborg, Nathalie; Sujino, Tomohisa; Moor, Andreas; Bartolome-Casado, Raquel; Bækkevold, Espen S.; Zhou, Ran; Xie, Bingqing; Lau, Ken S.; Din, Shahida; Magness, Scott T.; Yao, Qiuming; Beyaz, Semir; Arends, Mark; Denadai-Souza, Alexandre; Coburn, Lori A.; Gaublomme, Jellert T.; Baldock, Richard; Papatheodorou, Irene; Ordovas-Montanes, Jose; Boeckxstaens, Guy; Hupalowska, Anna; Teichmann, Sarah A.; Regev, Aviv; Xavier, Ramnik J.; Simmons, Alison; Snyder, Michael P.; Wilson, Keith T.

Deciphering the molecular basis of abiotic stress response in cucumber (Cucumis sativus L.) using RNA-Seq meta-analysis, systems biology, and machine learning approaches

Zinati, Zahra; Nazari, Leyla

Triose phosphate export from chloroplasts and cellular sugar content regulate anthocyanin biosynthesis during high light acclimation

Zirngibl, Max-Emanuel; Araguirang, Galileo Estopare; Kitashova, Anastasia; Jahnke, Kathrin; Rolka, Tobias; Kühn, Christine; Nägele, Thomas; Richter, Andreas S.

Plant circadian clock control of Medicago truncatula nodulation via regulation of nodule cysteine-rich peptides

Achom, Mingkee; Roy, Proyash; Lagunas, Beatriz; Picot, Emma; Richards, Luke; Bonyadi-Pour, Roxanna; Pardal, Alonso J; Baxter, Laura; Richmond, Bethany L; Aschauer, Nadine; Fletcher, Eleanor M; Rowson, Monique; Blackwell, Joseph; Rich-Griffin, Charlotte; Mysore, Kirankumar S; Wen, Jiangqi; Ott, Sascha; Carré, Isabelle A; Gifford, Miriam L

Transcriptomic Profiling and Microsatellite Identification in Cobia (Rachycentron canadum), Using High-Throughput RNA Sequencing

Aciole Barbosa, David; Araújo, Bruno C.; Branco, Giovana Souza; Simeone, Alexandre S.; Hilsdorf, Alexandre W. S.; Jabes, Daniela L.; Nunes, Luiz R.; Moreira, Renata G.; Menegidio, Fabiano B.

Tissue remodeling by an opportunistic pathogen triggers allergic inflammation

Agaronyan, Karen; Sharma, Lokesh; Vaidyanathan, Bharat; Glenn, Keith; Yu, Shuang; Annicelli, Charles; Wiggen, Talia D; Penningroth, Mitchell R; Hunter, Ryan C; Dela Cruz, Charles S; Medzhitov, Ruslan

The Effects of Hypoxic Preconditioned Murine Mesenchymal Stem Cells on Post-Infarct Arrhythmias in the Mouse Model

Ahmad, Beschan; Skorska, Anna; Wolfien, Markus; Sadraddin, Haval; Lemcke, Heiko; Vasudevan, Praveen; Wolkenhauer, Olaf; Steinhoff, Gustav; David, Robert; Gaebel, Ralf

Transcriptome-wide modulation by Sargassum vulgare and Acanthophora spicifera extracts results in a prime-triggered plant signaling cascade in tomato and sweet pepper

Ali, Omar; Ramsubhag, Adesh; Jayaraman, Jayaraj

Transcriptomic changes induced by applications of a commercial extract of Ascophyllum nodosum on tomato plants

Ali, Omar; Ramsubhag, Adesh; Daniram Benn Jr. Ramnarine, Stephen; Jayaraman, Jayaraj

Genome-wide identification, phylogeny, and gene duplication of the epigenetic regulators in Fagaceae

Alves, Sofia; Braga, Ângelo; Parreira, Denise; Alhinho, Ana Teresa; Silva, Helena; Ramos, Miguel Jesus Nunes; Costa, Maria Manuela Ribeiro; Morais-Cecílio, Leonor

TcTI, a Kunitz-type trypsin inhibitor from cocoa associated with defense against pathogens

Amaral, Milena do; Freitas, Ana Camila Oliveira; Santos, Ariana Silva; Santos, Everton Cruz dos; Ferreira, Monaliza Macêdo; Gesteira, Abelmon da Silva; Gramacho, Karina Peres; Marinho-Prado, Jeanne Scardini; Pirovani, Carlos Priminho

Distribution, inducibility, and characterisation of prophages in Latilactobacillus sakei

Ambros, Conrad L; Ehrmann, Matthias A

Metagenomic analysis of the gut microbiota in piglets either challenged or not with enterotoxigenic Escherichia coli reveals beneficial effects of probiotics on microbiome composition, resistome, digestive function and oxidative stress responses

Apiwatsiri, Prasert; Pupa, Pawiya; Sirichokchatchawan, Wandee; Sawaswong, Vorthon; Nimsamer, Pattaraporn; Payungporn, Sunchai; Hampson, David J; Prapasarakul, Nuvee

Functional and Safety Characterization of Weissella paramesenteroides Strains Isolated from Dairy Products through Whole-Genome Sequencing and Comparative Genomics

Apostolakos, Ilias; Paramithiotis, Spiros; Mataragas, Marios

Interplay between Klebsiella pneumoniae producing KPC-31 and KPC-3 under treatment with high dosage meropenem: a case report

Arcari, Gabriele; Oliva, Alessandra; Sacco, Federica; Lella, Federica Maria Di; Raponi, Giammarco; Tomolillo, Dario; Curtolo, Ambrogio; Venditti, Mario; Carattoli, Alessandra

A comprehensive transcriptomic comparison of hepatocyte model systems improves selection of models for experimental use

Ardisasmita, Arif Ibrahim; Schene, Imre F.; Joore, Indi P.; Kok, Gautam; Hendriks, Delilah; Artegiani, Benedetta; Mokry, Michal; Nieuwenhuis, Edward E. S.; Fuchs, Sabine A.

Cheminformatics Bioprospection of Broad Spectrum Plant Secondary Metabolites Targeting the Spike Proteins of Omicron Variant and Wild-Type SARS-CoV-2

Aribisala, Jamiu Olaseni; Aruwa, Christiana Eleojo; Uthman, Taofik Olatunde; Nurain, Ismaila Olanrewaju; Idowu, Kehinde; Sabiu, Saheed

Cheminformatics Identification of Phenolics as Modulators of Penicillin-Binding Protein 2a of Staphylococcus aureus: A Structure-Activity-Relationship-Based Study

Aribisala, Jamiu Olaseni; Sabiu, Saheed

Two New Rhizobiales Species Isolated from Root Nodules of Common Sainfoin (Onobrychis viciifolia) Show Different Plant Colonization Strategies

Ashrafi, Samad; Kuzmanović, Nemanja; Patz, Sascha; Lohwasser, Ulrike; Bunk, Boyke; Spröer, Cathrin; Lorenz, Maria; Elhady, Ahmed; Frühling, Anja; Neumann-Schaal, Meina; Verbarg, Susanne; Becker, Matthias; Thünen, Torsten

A new insight into sex-specific non-coding RNAs and networks in response to SARS-CoV-2

Askari, Nahid; Hadizadeh, Morteza; Rashidifar, Maryam

A Practical Bioinformatics Workflow for Routine Analysis of Bacterial WGS Data

Atxaerandio-Landa, Aitor; Arrieta-Gisasola, Ainhoa; Laorden, Lorena; Bikandi, Joseba; Garaizar, Javier; Martinez-Malaxetxebarria, Irati; Martinez-Ballesteros, Ilargi

Comparison of SARS-CoV-2 Evolution in Paediatric Primary Airway Epithelial Cell Cultures Compared with Vero-Derived Cell Lines

Bamford, Connor G. G.; Broadbent, Lindsay; Aranday-Cortes, Elihu; McCabe, Mary; McKenna, James; Courtney, David G.; Touzelet, Olivier; Ali, Ahlam; Roberts, Grace; Campos, Guillermo Lopez; Simpson, David; McCaughey, Conall; Fairley, Derek; Mills, Ken; and, Ultan F. Power

Impaired immune response drives age-dependent severity of COVID-19

Beer, Julius; Crotta, Stefania; Breithaupt, Angele; Ohnemus, Annette; Becker, Jan; Sachs, Benedikt; Kern, Lisa; Llorian, Miriam; Ebert, Nadine; Labroussaa, Fabien; Nhu Thao, Tran Thi; Trueeb, Bettina Salome; Jores, Joerg; Thiel, Volker; Beer, Martin; Fuchs, Jonas; Kochs, Georg; Wack, Andreas; Schwemmle, Martin; Schnepf, Daniel

Impaired immune response drives age-dependent severity of COVID-19

Beer, Julius; Crotta, Stefania; Breithaupt, Angele; Ohnemus, Annette; Becker, Jan; Sachs, Benedikt; Kern, Lisa; Llorian, Miriam; Ebert, Nadine; Labroussaa, Fabien; Thao, Tran Thi Nhu; Trueeb, Bettina Salome; Jores, Joerg; Thiel, Volker; Beer, Martin; Fuchs, Jonas; Kochs, Georg; Wack, Andreas; Schwemmle, Martin; Schnepf, Daniel

Examination of crustacean immune responses through dsRNA-nanoparticle injection and phylogenetic analysis

Blacklock, Emily

Analysis of Alternative mRNA Splicing in Vemurafenib-Resistant Melanoma Cells

Bokharaie, Honey; Kolch, Walter; Krstic, Aleksandar

Sex differences in the early life stages of the salmon louse Lepeophtheirus salmonis (Copepoda: Caligidae)

Borchel, Andreas; Komisarczuk, Anna Zofia; Nilsen, Frank

Whole-genome sequence of the filamentous diazotrophic cyanobacterium Tolypothrix sp. PCC 7712 and its comparison with non-diazotrophic Tolypothrix sp. PCC 7601

Bozan, Mahir; Popp, Denny; Kallies, Rene; Rocha, Ulisses Nunes; Klähn, Stephan; Bühler, Katja

Galaxy workflows for fragment-based virtual screening: a case study on the SARS-CoV-2 main protease

Bray, Simon; Dudgeon, Tim; Skyner, Rachael; Backofen, Rolf; Grüning, Björn; Delft, Frank

Microcystin-LR aerosol induces inflammatory responses in healthy human primary airway epithelium

Breidenbach, Joshua D.; French, Benjamin W.; Gordon, Tamiya T.; Kleinhenz, Andrew L.; Khalaf, Fatimah K.; Willey, James C.; Hammersley, Jeffrey R.; Mark Wooten, R.; Crawford, Erin L.; Modyanov, Nikolai N.; Malhotra, Deepak; Teeguarden, Justin G.; Haller, Steven T.; Kennedy, David J.

β-Glucuronidase Pattern Predicted From Gut Metagenomes Indicates Potentially Diversified Pharmacomicrobiomics

Candeliere, Francesco; Raimondi, Stefano; Ranieri, Raffaella; Musmeci, Eliana; Zambon, Alfonso; Amaretti, Alberto; Rossi, Maddalena

Robertsonian Fusion and Centromere Repositioning Contributed to the Formation of Satellite-free Centromeres During the Evolution of Zebras

Cappelletti, Eleonora; Piras, Francesca M; Sola, Lorenzo; Santagostino, Marco; Abdelgadir, Wasma A; Raimondi, Elena; Lescai, Francesco; Nergadze, Solomon G; Giulotto, Elena

LRF Promotes Indirectly Advantageous Chromatin Conformation via BGLT3-lncRNA Expression and Switch from Fetal to Adult Hemoglobin

Chondrou, Vasiliki; Shaukat, Athanasios-Nasir; Psarias, Georgios; Athanasopoulou, Katerina; Iliopoulou, Evanthia; Damanaki, Ariadne; Stathopoulos, Constantinos; Sgourou, Argyro

Biotechnological Production Of Terpenes

Christoph, Schwarz; Christian, Preuss; Amira, Antelmann

What's left in the tank? Identification of non-ascribed aquarium's coral collections with DNA barcodes as part of an integrated diagnostic approach

Colin, Luigi; Abed-Navandi, Daniel; Conde, Dalia A.; Craggs, Jamie; Silva, Rita da; Janse, Max; Källström, Björn; Pearce-Kelly, Alexander; Yesson, Chris

Effects of Hst3p inhibition in Candida albicans: a genome-wide H3K56 acetylation analysis

Conte, Marisa; Eletto, Daniela; Pannetta, Martina; Petrone, Anna M; Monti, Maria C; Cassiano, Chiara; Giurato, Giorgio; Rizzo, Francesca; Tessarz, Peter; Petrella, Antonello; Tosco, Alessandra; Porta, Amalia

Genome of Pythium myriotylum Uncovers an Extensive Arsenal of Virulence-Related Genes among the Broad-Host-Range Necrotrophic Pythium Plant Pathogens

Daly, Paul; Zhou, Dongmei; Shen, Danyu; Chen, Yifan; Xue, Taiqiang; Chen, Siqiao; Zhang, Qimeng; Zhang, Jinfeng; McGowan, Jamie; Cai, Feng; Pang, Guan; Wang, Nan; Sheikh, Taha Majid Mahmood; Deng, Sheng; Li, Jingjing; Soykam, Hüseyin Okan; Kara, Irem; Fitzpatrick, David A; Druzhinina, Irina S; Bayram Akcapinar, Günseli; Wei, Lihui

Whole-Genome Sequencing and Comparative Genomic Analysis of Antimicrobial Producing Streptococcus lutetiensis from the Rumen

Oliveira, Isabela Maria Fernandes; Godoy-Santos, Fernanda; Oyama, Linda Boniface; Moreira, Sofia Magalhães; Dias, Rodrigo Gonçalves; Huws, Sharon Ann; Creevey, Christopher J; Mantovani, Hilário Cuquetto

A South American Mouse Morbillivirus Provides Insight into a Clade of Rodent-Borne Morbilliviruses

Debat, Humberto J

ECO: An Integrated Gene Expression Omnibus for Mouse Endothelial Cells In Vivo

Deng, Xiangyi; Yang, Fan; Zhang, Lei; Wang, Jianhao; Liu, Boxuan; Liang, Wei; Tang, Jiefu; Xie, Yuan; He, Liqun

LAMP Assay for Distinguishing Fusarium oxysporum and Fusarium commune in Lotus (Nelumbo nucifera) Rhizomes

Deng, Sheng; Ma, Xin; Chen, Yifan; Feng, Hui; Zhou, Dongmei; Wang, Xiaoyu; Zhang, Yong; Zhao, Min; Zhang, Jinfeng; Daly, Paul; Wei, Lihui

Conditional termination of transcription is shaped by Rho and translated uORFS inMycobacterium tuberculosis

D’Halluin, Alexandre; Polgar, Peter; Kipkorir, Terry; Patel, Zaynah; Cortes, Teresa; Arnvig, Kristine

Pathogenicity of Shiga toxin-producing Escherichia coli (STEC) from wildlife: Should we care?

Dias, Diana; Costa, Sávio; Fonseca, Carlos; Baraúna, Rafael; Caetano, Tânia; Mendo, Sónia

Characterization of virulence and antimicrobial resistance genes of Aeromonas media strain SD/21-15 from marine sediments in comparison with other Aeromonas spp

Dubey, Saurabh; Ager-Wick, Eirill; Peng, Bo; Evensen, Øystein; Sørum, Henning; Munang'andu, Hetron Mweemba

A chromosomal loop anchor mediates bacterial genome organization

Dugar, Gaurav; Hofmann, Andreas; Heermann, Dieter W; Hamoen, Leendert W

Hidden Talents: Silent Gene Clusters Encoding Magnetic Organelle Biosynthesis in a Non-Magnetotactic Phototrophic Bacterium

Dziuba, M.V.; Paulus, A; Schramm, L; Awal, R.P.; Pósfai, M; Monteil, C.L.; Fouteau, S; Uebe, R; Schüler, D

Genotyping of Circulating Free DNA Enables Monitoring of Tumor Dynamics in Synovial Sarcomas

Eisenhardt, Anja E.; Brugger, Zacharias; Lausch, Ute; Kiefer, Jurij; Zeller, Johannes; Runkel, Alexander; Schmid, Adrian; Bronsert, Peter; Wehrle, Julius; Leithner, Andreas; Liegl-Atzwanger, Bernadette; Giunta, Riccardo E.; Eisenhardt, Steffen U.; Braig, David

Association of DNA methylation and genetic variations of the APOE gene with the risk of diabetic dyslipidemia

Ereqat, Suheir; Cauchi, Stéphane; Eweidat, Khaled; Elqadi, Muawiyah; Ghatass, Manal; Sabarneh, Anas; Nasereddin, Abedelmajeed

Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework

Fahrner, Matthias; Föll, Melanie Christine; Grüning, Björn Andreas; Bernt, Matthias; Röst, Hannes; Schilling, Oliver

Spread of hypervirulent multidrug-resistant ST147 Klebsiella pneumoniae in patients with severe COVID-19: an observational study from Italy, 2020-21

Falcone, Marco; Tiseo, Giusy; Arcari, Gabriele; Leonildi, Alessandro; Giordano, Cesira; Tempini, Sara; Bibbolino, Giulia; Mozzo, Roberto; Barnini, Simona; Carattoli, Alessandra; Menichetti, Francesco

An analysis of proteogenomics and how and when transcriptome-informed reduction of protein databases can enhance eukaryotic proteomics

Fancello, Laura; Burger, Thomas

Detection and population genomics of sea turtle species via noninvasive environmental DNA analysis of nesting beach sand tracks and oceanic water

Farrell, Jessica A.; Whitmore, Liam; Mashkour, Narges; Rollinson Ramia, Devon R.; Thomas, Rachel S.; Eastman, Catherine B.; Burkhalter, Brooke; Yetsko, Kelsey; Mott, Cody; Wood, Larry; Zirkelbach, Bette; Meers, Lucas; Kleinsasser, Pat; Stock, Sharon; Libert, Elizabeth; Herren, Richard; Eastman, Scott; Crowder, Whitney; Bovery, Caitlin; Anderson, David; Godfrey, David; Condron, Nancy; Duffy, David J.

SpyChIP identifies cell type-specific transcription factor occupancy from complex tissues

Feng, Siqian; Mann, Richard S

Transcription factor paralogs orchestrate alternative gene regulatory networks by context-dependent cooperation with multiple cofactors

Feng, Siqian; Rastogi, Chaitanya; Loker, Ryan; Glassford, William J.; Tomas Rube, H.; Bussemaker, Harmen J.; Mann, Richard S.

Moving translational mass spectrometry imaging towards transparent and reproducible data analyses: a case study of an urothelial cancer cohort analyzed in the Galaxy framework

Föll, Melanie Christine; Volkmann, Veronika; Enderle-Ammour, Kathrin; Timme, Sylvia; Wilhelm, Konrad; Guo, Dan; Vitek, Olga; Bronsert, Peter; Schilling, Oliver

Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs

Formenti, Giulio; Abueg, Linelle; Brajuka, Angelo; Brajuka, Nadolina; Gallardo-Alba, Cristóbal; Giani, Alice; Fedrigo, Olivier; Jarvis, Erich D

Benchmarking of analysis strategies for data-independent acquisition proteomics using a large-scale dataset comprising inter-patient heterogeneity

Fröhlich, Klemens; Brombacher, Eva; Fahrner, Matthias; Vogele, Daniel; Kook, Lucas; Pinter, Niko; Bronsert, Peter; Timme-Bronsert, Sylvia; Schmidt, Alexander; Bärenfaller, Katja; Kreutz, Clemens; Schilling, Oliver

Fructobacillus cardui sp. nov., isolated from a thistle (Carduus nutans) flower

Gallus, Marion K.; Beer, Irina; Ivleva, Natalia P.; Ehrmann, Matthias A.YR 2022

Pluripotency factors determine gene expression repertoire at zygotic genome activation

Gao, Meijiang; Veil, Marina; Rosenblatt, Marcus; Riesle, Aileen Julia; Gebhard, Anna; Hass, Helge; Buryanova, Lenka; Yampolsky, Lev Y.; Grüning, Björn; Ulianov, Sergey V.; Timmer, Jens; Onichtchouk, Daria

A Comprehensive Study of the WRKY Transcription Factor Family in Strawberry

Garrido-Gala, José; Higuera, José-Javier; Rodríguez-Franco, Antonio; Muñoz-Blanco, Juan; Amil-Ruiz, Francisco; Caballero, José L

Shigellainduces epigenetic reprogramming of zebrafish neutrophils

Gomes, Margarida; Brokatzky, Dominik; Bielecka, Magdalena; Wardle, Fiona; Mostowy, Serge

Integrative Gene Expression and Metabolic Analysis Tool IgemRNA

Grausa, Kristina; Mozga, Ivars; Pleiko, Karlis; Pentjuss, Agris

P989: DYNAMIC CHANGES IN THE HISTONE H3 LYSINE 27 TRIMETHYLATION EPIGENETIC LANDSCAPE FOLLOWING RUXOLITINIB ADMINISTRATION

Greenfield, G.; McMullin, M. F.; Mills, K.

A Tetragenococcus halophilus human gut isolate

Guindo, Cheick Oumar; Morsli, Madjid; Bellali, Sara; Drancourt, Michel; Grine, Ghiles

Galaxy Training: A Powerful Framework for Teaching!

Hiltemann, Saskia; Rasche, Helena; Gladman, Simon; Hotz, Hans-Rudolf; Larivière, Delphine; Blankenberg, Daniel; Jagtap, Pratik; Wollmann, Thomas; Bretaudeau, Anthony; Goué, Nadia; Griffin, Timothy; Royaux, Coline; Le Bras, Yvan; Mehta, Subina; Syme, Anna; Coppens, Frederik; Droesbeke, Bert; Soranzo, Nicola; Bacon, Wendi; Psomopoulos, Fotis; Gallardo-Alba, Cristóbal; Davis, John; Föll, Melanie Christine; Fahrner, Matthias; Doyle, Maria; Serrano-Solano, Beatriz; Fouilloux, Anne; Heusden, Peter; Maier, Wolfgang; Clements, Dave; Heyl, Florian; Grüning, Björn; Batut, Bérénice; =the Galaxy Training Network

Whole-Genome Sequences of Human Monkeypox Virus Strains from Two 2022 Global Outbreak Cases in Western New York State

Howard, Mondraya; Maki, Joel J; Connelly, Sara; Hardy, Dwight J; Cameron, Andrew

Semi-automated assembly of high-quality diploid human reference genomes

Jarvis, Erich D.; Formenti, Giulio; Rhie, Arang; Guarracino, Andrea; Yang, Chentao; Wood, Jonathan; Tracey, Alan; Thibaud-Nissen, Francoise; Vollger, Mitchell R.; Porubsky, David; Cheng, Haoyu; Asri, Mobin; Logsdon, Glennis A.; Carnevali, Paolo; Chaisson, Mark J. P.; Chin, Chen-Shan; Cody, Sarah; Collins, Joanna; Ebert, Peter; Escalona, Merly; Fedrigo, Olivier; Fulton, Robert S.; Fulton, Lucinda L.; Garg, Shilpa; Gerton, Jennifer L.; Ghurye, Jay; Granat, Anastasiya; Green, Richard E.; Harvey, William; Hasenfeld, Patrick; Hastie, Alex; Haukness, Marina; Jaeger, Erich B.; Jain, Miten; Kirsche, Melanie; Kolmogorov, Mikhail; Korbel, Jan O.; Koren, Sergey; Korlach, Jonas; Lee, Joyce; Li, Daofeng; Lindsay, Tina; Lucas, Julian; Luo, Feng; Marschall, Tobias; Mitchell, Matthew W.; McDaniel, Jennifer; Nie, Fan; Olsen, Hugh E.; Olson, Nathan D.; Pesout, Trevor; Potapova, Tamara; Puiu, Daniela; Regier, Allison; Ruan, Jue; Salzberg, Steven L.; Sanders, Ashley D.; Schatz, Michael C.; Schmitt, Anthony; Schneider, Valerie A.; Selvaraj, Siddarth; Shafin, Kishwar; Shumate, Alaina; Stitziel, Nathan O.; Stober, Catherine; Torrance, James; Wagner, Justin; Wang, Jianxin; Wenger, Aaron; Xiao, Chuanle; Zimin, Aleksey V.; Zhang, Guojie; Wang, Ting; Li, Heng; Garrison, Erik; Haussler, David; Hall, Ira; Zook, Justin M.; Eichler, Evan E.; Phillippy, Adam M.; Paten, Benedict; Howe, Kerstin; Miga, Karen H.

Redistribution of the SWI/SNF Complex Dictates Coordinated Transcriptional Control over Epithelial–Mesenchymal Transition of Normal Breast Cells through TGF-β Signaling

Jdeed, Sham; Lengyel, Máté; Uray, Iván P.

In-Depth Metaproteomics Analysis of Oral Microbiome for Lung Cancer

Jiang, Xiaoteng; Zhang, Yan; Wang, Huiyu; Wang, Zeyuan; Hu, Shen; Cao, Chengxi; Xiao, Hua

Antibody escape and global spread of SARS-CoV-2 lineage A.27

Kaleta, Tamara; Kern, Lisa; Hong, Samuel Leandro; Hölzer, Martin; Kochs, Georg; Beer, Julius; Schnepf, Daniel; Schwemmle, Martin; Bollen, Nena; Kolb, Philipp; Huber, Magdalena; Ulferts, Svenja; Weigang, Sebastian; Dudas, Gytis; Wittig, Alice; Jaki, Lena; Padane, Abdou; Lagare, Adamou; Salou, Mounerou; Ozer, Egon Anderson; Nnaemeka, Ndodo; Odoom, John Kofi; Rutayisire, Robert; Benkahla, Alia; Akoua-Koffi, Chantal; Ouedraogo, Abdoul-Salam; Simon-Lorière, Etienne; Enouf, Vincent; Kröger, Stefan; Calvignac-Spencer, Sébastien; Baele, Guy; Panning, Marcus; Fuchs, Jonas

Targeted DamID in C. elegans reveals a direct role for LIN-22 and NHR-25 in antagonizing the epidermal stem cell fate

Katsanos, Dimitris; Barkoulas, Michalis

Genome-wide analysis of DUF221 domain-containing gene family in common bean and identification of its role on abiotic and phytohormone stress response

Kavas, Musa; Mostafa, Karam; Seçgin, Zafer; Yerlikaya, Bayram Ali; Yıldırım, Kubilay; Gökdemir, Gökhan

Complete Genome Sequence of Metabacillus litoralis Strain NCTR108, Isolated from Commercial Tattoo Ink

Kim, Sung Guk; Summage-West, Christine V.; Reyna, Mariela; Kim, Seong-Jae; Foley, Steven L.

Complete Genome Sequence of Terrisporobacter glycolicus Strain WW3900, Isolated from Influent Wastewater at a Research Center with Multiple-Species Research Animal Facilities

Kim, Sung Guk; Summage-West, Christine V.; Reyna, Mariela; Feye, Kristina M.; Foley, Steven L.

DBC1 is a key positive regulator of enhancer epigenomic writers KMT2D and p300

Kim, Hwa Jin; Moon, Sue Jin; Hong, Sanghoon; Won, Hong-Hee; Kim, Jeong Hoon

Olfactomedin-4 improves cutaneous wound healing by promoting skin cell proliferation and migration through POU5F1/OCT4 and ESR1 signalling cascades

Klaas, Mariliis; Mäemets-Allas, Kristina; Heinmäe, Elizabeth; Lagus, Heli; Arak, Terje; Eller, Mart; Kingo, Külli; Kankuri, Esko; Jaks, Viljar

Novel insights related to the rise of KPC-producing Enterobacter cloacae complex strains within the nosocomial niche

Knecht, Camila A; García Allende, Natalia; Álvarez, Verónica E; Prack McCormick, Barbara; Massó, Mariana G; Piekar, María; Campos, Josefina; Fox, Bárbara; Camicia, Gabriela; Gambino, Anahí S; Leguina, Ana Carolina Del Valle; Donis, Nicolás; Fernández-Canigia, Liliana; Quiroga, María Paula; Centrón, Daniela

SARS-CoV-2 Reverse Zoonoses to Pumas and Lions, South Africa

Koeppel, Katja Natalie; Mendes, Adriano; Strydom, Amy; Rotherham, Lia; Mulumba, Misheck; Venter, Marietjie

Draft Genome Sequences of 25 Mycobacterium marinum Strains Isolated from Animals and Environmental Components in Aquaria and an Aquaculture Farm

Komine, Takeshi; Fukano, Hanako; Inohana, Mari; Hoshino, Yoshihiko; Kurata, Osamu; Wada, Shinpei

An accessible infrastructure for artificial intelligence using a Docker-based JupyterLab in Galaxy

Kumar, Anup; Cuccuru, Gianmauro; Grüning, Björn; Backofen, Rolf

In vitro and in silico analysis of Brilliant Black degradation by Actinobacteria and a Paraburkholderia sp.

Kumaran, Selvapravin; Ngo, Anna Christina R.; Schultes, Fabian P. J.; Saravanan, Venkatakrishnan Sivaraj; Tischler, Dirk

Oxa-376 and Oxa-530 variants of β-lactamase: computational study uncovers potential therapeutic targets of Acinetobacter baumannii

Kumar Halder, Sajal; Mulla Mim, Maria; Hassan Alif, Md Meharab; Fardous Shathi, Jannatul; Alam, Nuhu; Shil, Aparna; Kabir Himel, Mahbubul

A novel membrane complex is required for docking and regulated exocytosis of lysosome-related organelles in Tetrahymena thermophila

Kuppannan, Aarthi; Jiang, Yu-Yang; Maier, Wolfgang; Liu, Chang; Lang, Charles F; Cheng, Chao-Yin; Field, Mark C; Zhao, Minglei; Zoltner, Martin; Turkewitz, Aaron P

Ancient multiplicity in cyclic nucleotide-gated (CNG) cation channel repertoire was reduced in the ancestor of Olfactores before re-expansion by whole genome duplications in vertebrates

Lagman, David; Haines, Helen J; Abalo, Xesús M; Larhammar, Dan

Single-Cell Protein and Transcriptional Characterization of Epiretinal Membranes From Patients With Proliferative Vitreoretinopathy

Laich, Yannik; Wolf, Julian; Hajdu, Rozina Ida; Schlecht, Anja; Bucher, Felicitas; Pauleikhoff, Laurenz; Busch, Martin; Martin, Gottfried; Faatz, Henrik; Killmer, Saskia; Bengsch, Bertram; Stahl, Andreas; Lommatzsch, Albrecht; Schlunck, Günther; Agostini, Hansjürgen; Boneva, Stefaniya; Lange, Clemens

Dose-dependent consequences of sub-chronic fentanyl exposure on neuron and glial co-cultures

Lam, Doris; Sebastian, Aimy; Bogguri, Chandrakumar; Hum, Nicholas R; Ladd, Alexander; Cadena, Jose; Valdez, Carlos A; Fischer, Nicholas O; Loots, Gabriela G; Enright, Heather A

Case Series: Convalescent Plasma Therapy for Patients with COVID-19 and Primary Antibody Deficiency

Lang-Meli, Julia; Fuchs, Jonas; Mathé, Philipp; Ho, Hsi-En; Kern, Lisa; Jaki, Lena; Rusignuolo, Giuseppe; Mertins, Susanne; Somogyi, Vivien; Neumann-Haefelin, Christoph; Trinkmann, Frederik; Müller, Michael; Thimme, Robert; Umhau, Markus; Quinti, Isabella; Wagner, Dirk; Panning, Marcus; Cunningham-Rundles, Charlotte; Laubner, Katharina; Warnatz, Klaus

NFATc1 signaling drives chronic ER stress responses to promote NAFLD progression

Latif, Muhammad Umair; Schmidt, Geske Elisabeth; Mercan, Sercan; Rahman, Raza; Gibhardt, Christine Silvia; Stejerean-Todoran, Ioana; Reutlinger, Kristina; Hessmann, Elisabeth; Singh, Shiv K.; Moeed, Abdul; Rehman, Abdul; Butt, Umer Javed; Bohnenberger, Hanibal; Stroebel, Philipp; Bremer, Sebastian Christopher; Neesse, Albrecht; Bogeski, Ivan; Ellenrieder, Volker

Genomic epidemiology of SARS- CoV-2 Omicron variants in the Republic of Korea

Lee, Dong-Wook; Kim, Jeong-Min; Park, Ae Kyung; Kim, Da-Won; Kim, Ji-Yun; Lim, Noori; Lee, Hyeokjin; Kim, Il-Hwan; Kim, Jeong-Ah; Lee, Chae young; Kwon, Jung-Hoon; Kim, Eun-Jin

Comparative genomics of Acinetobacter baumannii and therapeutic bacteriophages from a patient undergoing phage therapy

Liu, Mei; Hernandez-Morales, Adriana; Clark, James; Le, Tram; Biswas, Biswajit; Bishop-Lilly, Kimberly A.; Henry, Matthew; Quinones, Javier; Voegtly, Logan J.; Cer, Regina Z.; Hamilton, Theron; Schooley, Robert T.; Salka, Scott; Young, Ry; Gill, Jason J.

Pre-Synaptic GABAA in NaV1.8+ Primary Afferents Is Required for the Development of Punctate but Not Dynamic Mechanical Allodynia following CFA Inflammation

Liu, Sheng; Bonalume, Veronica; Gao, Qi; Chen, Jeremy Tsung-Chieh; Rohr, Karl; Hu, Jing; Carr, Richard

Evaluation of the potential prebiotic effect of Himanthalia elongata, an Atlantic brown seaweed, in an in vitro model of the human distal colon

Lopez-Santamarina, Aroa; Cardelle-Cobas, Alejandra; Carmen Mondragon, Alicia; Sinisterra-Loaiza, Laura; Miranda, Jose Manuel; Cepeda, Alberto

Nutritional composition, heavy metal content and in vitro effect on the human gut microbiota of Talitrus saltator, an underutilized crustacean from the Atlantic coast

Lopez-Santamarina, Aroa; Cardelle-Cobas, Alejandra; Lamas, Alexandre; Mondragon-Portocarrero, Alicia; Cepeda, Alberto; Miranda, Jose Manuel

RASCL: Rapid Assessment of Selection in CLades through molecular sequence analysis

Lucaci, Alexander G; Zehr, Jordan D; Shank, Stephen D; Bouvier, Dave; Ostrovsky, Alexander; Mei, Han; Nekrutenko, Anton; Martin, Darren P; Kosakovsky Pond, Sergei L

RASCL: Rapid Assessment Of SARS-CoV-2 Clades Through Molecular Sequence Analysis

Lucaci, Alexander G; Zehr, Jordan D; Shank, Stephen D; Bouvier, Dave; Mei, Han; Nekrutenko, Anton; Martin, Darren P; Pond, Sergei

Further Extension of Lifespan by Unc-43/CaMKII and Egl-8/PLCβ Mutations in Germline-Deficient Caenorhabditis elegans

Mack, Hildegard I D; Buck, Laura G; Skalet, Sonja; Kremer, Jennifer; Li, Hao; Mack, Elisabeth K M

Regulation of fatty acid desaturase- and immunity gene-expression by mbk-1/DYRK1A in Caenorhabditis elegans

Mack, Hildegard I. D.; Kremer, Jennifer; Albertini, Eva; Mack, Elisabeth K. M.; Jansen-Dürr, Pidder

Method For The Accurate Quantification Of Non-coding Rnas In Minute Quantities

Marco, Kristen; Mark, Helm

Trypanosoma brucei histones are heavily modified with combinatorial post-translational modifications and mark Pol II transcription start regions with hyperacetylated H2A

Maree, Johannes P; Tvardovskiy, Andrey; Ravnsborg, Tina; Jensen, Ole N; Rudenko, Gloria; Patterton, Hugh-G

Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function

Martin, Darren P; Lytras, Spyros; Lucaci, Alexander G; Maier, Wolfgang; Grüning, Björn; Shank, Stephen D; Weaver, Steven; MacLean, Oscar A; Orton, Richard J; Lemey, Philippe; Boni, Maciej F; Tegally, Houriiyah; Harkins, Gordon W; Scheepers, Cathrine; Bhiman, Jinal N; Everatt, Josie; Amoako, Daniel G; San, James Emmanuel; Giandhari, Jennifer; Sigal, Alex; =NGS-SA; Williamson, Carolyn; Hsiao, Nei-Yuan; Gottberg, Anne; De Klerk, Arne; Shafer, Robert W; Robertson, David L; Wilkinson, Robert J; Sewell, B Trevor; Lessells, Richard; Nekrutenko, Anton; Greaney, Allison J; Starr, Tyler N; Bloom, Jesse D; Murrell, Ben; Wilkinson, Eduan; Gupta, Ravindra K; Oliveira, Tulio; Kosakovsky Pond, Sergei L

Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA. 1 that likely impact Spike function

Martin, Darren P; Lytras, Spyro; Lucaci, Alexander G; Maier, Wolfgang; Gruning, Bjorn; Shank, Stephen D; Weaver, Steven; MacLean, Oscar S; Orton, Richard J; Lemey, Philippe; others

Ultraviolet vision in larval Neogonodactylus oerstedii

McDonald, Marisa S.; Palecanda, Sitara; Cohen, Jonathan H.; Porter, Megan L.

Catching the Wave: Detecting Strain-Specific SARS-CoV-2 Peptides in Clinical Samples Collected during Infection Waves from Diverse Geographical Locations

Mehta, Subina; Carvalho, Valdemir M.; Rajczewski, Andrew T.; Pible, Olivier; Grüning, Björn A.; Johnson, James E.; Wagner, Reid; Armengaud, Jean; Griffin, Timothy J.; Jagtap, Pratik D.

The antileukemic activity of decitabine upon PML/RARA-negative AML blasts is supported by all-trans retinoic acid: in vitro and in vivo evidence for cooperation

Meier, Ruth; Greve, Gabriele; Zimmer, Dennis; Bresser, Helena; Berberich, Bettina; Langova, Ralitsa; Stomper, Julia; Rubarth, Anne; Feuerbach, Lars; Lipka, Daniel B.; Hey, Joschka; Grüning, Björn; Brors, Benedikt; Duyster, Justus; Plass, Christoph; Becker, Heiko; Lübbert, Michael

Investigation of the Defective Growth Pattern and Multidrug Resistance in a Clinical Isolate of Candida glabrata Using Whole-Genome Sequencing and Computational Biology Applications

Merdan, Osman; Şişman, Ayşe Sena; Aksoy, Seçil Ak; Kızıl, Samet; Tüzemen, Nazmiye Ülkü; Yılmaz, Emel; Ener, Beyza

Variant Analysis and Strategic Clustering to Sub-Lineage of Double Mutant Strain B.1.617 of SARS-CoV-2

Mevada, Vishal; Patel, Rajesh; Dudhagara, Pravin; Gandhi, Himani; Beladiya, Urvisha; Vaghamshi, Nilam; Godhaniya, Manoj; Ghelani, Anjana

In silico drug repurposing against SARS-CoV-2 using an integrative transcriptomic profiling approach: Hydrocortisone and Benzhydrocodone as potential drug candidates against COVID-19

Mirmohammadi, SeyedehMozhdeh; Kianmehr, Anvarsadat; Sabbaghian, Amir; Mohebbi, Alireza; Shahbazmohammadi, Hamid; Sheykharabi, Mehdi; Bazzi, Zahra

CRISPRtracrRNA: robust approach for CRISPR tracrRNA detection

Mitrofanov, Alexander; Ziemann, Marcus; Alkhnbashi, Omer S; Hess, Wolfgang R; Backofen, Rolf

Real-time metagenomics-based diagnosis of community-acquired meningitis: A prospective series, southern France

Morsli, Madjid; Boudet, Agathe; Kerharo, Quentin; Stephan, Robin; Salipante, Florian; Dunyach-Remy, Catherine; Houhamdi, Linda; Fournier, Pierre-Edouard; Lavigne, Jean Philippe; Drancourt, Michel

Gut microbiota drives age-related oxidative stress and mitochondrial damage in microglia via the metabolite N6-carboxymethyllysine

Mossad, Omar; Batut, Bérénice; Yilmaz, Bahtiyar; Dokalis, Nikolaos; Mezö, Charlotte; Nent, Elisa; Nabavi, Lara Susann; Mayer, Melanie; Maron, Feres José Mocayar; Buescher, Joerg M.; Agüero, Mercedes Gomez; Szalay, Antal; Lämmermann, Tim; Macpherson, Andrew J.; Ganal-Vonarburg, Stephanie C.; Backofen, Rolf; Erny, Daniel; Prinz, Marco; Blank, Thomas

Absence of increased genomic variants in the cyanobacterium Chroococcidiopsis exposed to Mars-like conditions outside the space station

Napoli, Alessandro; Micheletti, Diego; Pindo, Massimo; Larger, Simone; Cestaro, Alessandro; Vera, Jean-Pierre; Billi, Daniela

Concurrent molecular characterization of sand flies and Leishmania parasites by amplicon-based next-generation sequencing

Nasereddin, Abedelmajeed; Ereqat, Suheir; Al-Jawabreh, Amer; Taradeh, Mohamad; Abbasi, Ibrahim; Al-Jawabreh, Hanan; Sawalha, Samer; Abdeen, Ziad

Identification of SARS-CoV-2 Variants of Concern Using Amplicon Next-Generation Sequencing

Nasereddin, Abdelmajeed; Golan Berman, Hadar; Wolf, Dana G.; Oiknine-Djian, Esther; Adar, Sheera

Tracking of SARS-CoV-2 Alpha variant (B.1.1.7) in Palestine

Nasereddin, Abedelmajeed; Al-Jawabreh, Amer; Dumaidi, Kamal; Al-Jawabreh, Ahmed; Al-Jawabreh, Hanan; Ereqat, Suheir

Histone Deacetylase 6 Inhibitor JS28 Prevents Pathological Gene Expression in Cardiac Myocytes

Ngo, Vivien; Fleischmann, Bernd K.; Jung, Manfred; Hein, Lutz; Lother, Achim

Abstract Book for the 27th Congress of the European Hematology Association

Impact of high platelet turnover on the platelet transcriptome: Results from platelet RNA-sequencing in patients with sepsis

Nührenberg, Thomas G.; Stöckle, Jasmin; Marini, Federico; Zurek, Mark; Grüning, Björn A.; Benes, Vladimir; Hein, Lutz; Neumann, Franz-Josef; Stratz, Christian; Cederqvist, Marco; Hochholzer, Willibald

The complete mitochondrial genome of the zebra seabream Diplodus cervinus (Perciformes, Sparidae) from the Mediterranean Sea

Osca, David; Caputi, Luigi; Tanduo, Valentina; Sepe, Rosa Maria; Liberti, Assunta; Tiralongo, Francesco; Venuti, Iolanda; Ceruso, Marina; Crocetta, Fabio; Sordino, Paolo; Pepe, Tiziana

LotuS2: an ultrafast and highly accurate tool for amplicon sequencing analysis

Özkurt, Ezgi; Fritscher, Joachim; Soranzo, Nicola; Ng, Duncan Y. K.; Davey, Robert P.; Bahram, Mohammad; Hildebrand, Falk

Construction and characterization of a de novo draft genome of garden cress (Lepidium sativum L.)

Patat, Aysenur Soyturk; Sen, Fatima; Erdogdu, Behic Selman; Uncu, Ali Tevfik; Uncu, Ayse Ozgur

Characterization of regulatory transcriptional mechanisms in hepatocyte lipotoxicity

Pérez-Schindler, Joaquín; Vargas-Fernández, Elyzabeth; Karrer-Cardel, Bettina; Ritz, Danilo; Schmidt, Alexander; Handschin, Christoph

Virulence plasmid pINV as a genetic signature for Shigella flexneri phylogeny

Pilla, Giulia; Arcari, Gabriele; Tang, Christoph M; Carattoli, Alessandra

MaxQuant and MSstats in Galaxy Enable Reproducible Cloud-Based Analysis of Quantitative Proteomics Experiments for Everyone

Pinter, Niko; Glätzer, Damian; Fahrner, Matthias; Fröhlich, Klemens; Johnson, James; Grüning, Björn Andreas; Warscheid, Bettina; Drepper, Friedel; Schilling, Oliver; Föll, Melanie Christine

Transcriptomic Landscape and Functional Characterization of Human Induced Pluripotent Stem Cell-Derived Limbal Epithelial Progenitor Cells

Polisetti, Naresh; Rapp, Julian; Liang, Paula; Dettmer-Monaco, Viviane; Bucher, Felicitas; Pruszak, Jan; Schlötzer-Schrehardt, Ursula; Cathomen, Toni; Schlunck, Günther; Reinhard, Thomas

Fused inverse-normal method for integrated differential expression analysis of RNA-seq data

Prasad, Birbal; Li, Xinzhong

eDNA profiling of mammals, birds, and fish of surface waters by mitochondrial metagenomics: application for source tracking of fecal contamination in surface waters

Ragot, Rose; Villemur, Richard

Custos Secrets: a Service for Managing User-Provided Resource Credential Secrets for Science Gateways

Ranawaka, Isuru; Goonasekara, Nuwan; Afgan, Enis; Basney, Jim; Marru, Suresh; Pierce, Marlon

Training Infrastructure as a Service

Rasche, Helena; Hyde, Cameron; Davis, John; Gladman, Simon; Coraor, Nate; Bretaudeau, Anthony; Cuccuru, Gianmauro; Bacon, Wendi; Serrano-Solano, Beatriz; Hillman-Jackson, Jennifer; Hiltemann, Saskia; Zhou, Miaomiao; Grüning, Björn; Stubbs, Andrew

Bhlhe40 function in activated B and TFH cells restrains the GC reaction and prevents lymphomagenesis

Rauschmeier, René; Reinhardt, Annika; Gustafsson, Charlotte; Glaros, Vassilis; Artemov, Artem V; Dunst, Josefine; Taneja, Reshma; Adameyko, Igor; Månsson, Robert; Busslinger, Meinrad; Kreslavsky, Taras

miR-106b is a novel target to promote muscle regeneration and restore satellite stem cell function in injured Duchenne dystrophic muscle

Rodriguez-Outeiriño, Lara; Hernandez-Torres, Francisco; Acuña, Felicitas; Rastrojo, Alberto; Creus, Carlota; Carvajal, Alejandra; Salmeron, Luis; Montolio, Marisol; Soblechero-Martin, Patricia; Arechavala-Gomeza, Virginia; Franco, Diego; Aranega, Amelia Eva

TRIM28-dependent SUMOylation protects the adult ovary from activation of the testicular pathway

Rossitto, Moïra; Déjardin, Stephanie; Rands, Chris M; Le Gras, Stephanie; Migale, Roberta; Rafiee, Mahmoud-Reza; Neirijnck, Yasmine; Pruvost, Alain; Nguyen, Anvi Laetitia; Bossis, Guillaume; Cammas, Florence; Le Gallic, Lionel; Wilhelm, Dagmar; Lovell-Badge, Robin; Boizet-Bonhoure, Brigitte; Nef, Serge; Poulat, Francis

A panel of blood-derived miRNAs with a stable expression pattern as a potential pan-cancer detection signature

Sabbaghian, Amir; Mussack, Veronika; Kirchner, Benedikt; Bui, Maria L. U.; Kalani, Mohammad Reza; Pfaffl, Michael W.; Golalipour, Masoud

An outbreak sustained by ST15 Klebsiella pneumoniae carrying 16S rRNA methyltransferases and blaNDM: evaluation of the global dissemination of these resistance determinants

Sacco, Federica; Raponi, Giammarco; Oliva, Alessandra; Bibbolino, Giulia; Mauro, Vera; Di Lella, Federica Maria; Volpicelli, Lorenzo; Antonelli, Guido; Venditti, Mario; Carattoli, Alessandra; Arcari, Gabriele

Arnold tongue entrainment reveals dynamical principles of the embryonic segmentation clock

Sanchez, Paul Gerald Layague; Mochulska, Victoria; Mauffette Denis, Christian; Mönke, Gregor; Tomita, Takehito; Tsuchida-Straeten, Nobuko; Petersen, Yvonne; Sonnen, Katharina; François, Paul; Aulehla, Alexander

Next Generation Sequencing Approaches to Characterize the Respiratory Tract Virome

Sandybayev, Nurlan; Beloussov, Vyacheslav; Strochkov, Vitaliy; Solomadin, Maxim; Granica, Joanna; Yegorov, Sergey

The potential of bacterial key species as a tool for monitoring peatland quality

Saragih, F. A. S.; Nelvia; Pratiwi, N. W.; Zul, D.

Transcriptional and Distributional Profiling of Microglia in Retinal Angiomatous Proliferation

Schlecht, Anja; Wolf, Julian; Boneva, Stefaniya; Prinz, Gabriele; Braunger, Barbara M; Wieghofer, Peter; Agostini, Hansjürgen; Schlunck, Günther; Lange, Clemens

Genome wide CRISPR screen for Pasteurella multocida toxin (PMT) binding proteins reveals LDL Receptor Related Protein 1 (LRP1) as crucial cellular receptor

Schoellkopf, Julian; Mueller, Thomas; Hippchen, Lena; Mueller, Teresa; Reuten, Raphael; Backofen, Rolf; Orth, Joachim; Schmidt, Gudula

Biotechnological production of terpenes

Schwarz, Christoph; PREUSS, Christian; ANTELMANN, Amira

Endophytic Bacteria Associated with Origanum heracleoticum L. (Lamiaceae) Seeds

Semenzato, Giulia; Faddetta, Teresa; Falsini, Sara; Del Duca, Sara; Esposito, Antonia; Padula, Anna; Greco, Claudia; Mucci, Nadia; Zaccaroni, Marco; Puglia, Anna Maria; Papini, Alessio; Fani, Renato

Genomic Analysis of Endophytic Bacillus-Related Strains Isolated from the Medicinal Plant Origanum vulgare L. Revealed the Presence of Metabolic Pathways Involved in the Biosynthesis of Bioactive Compounds

Semenzato, Giulia; Alonso-Vásquez, Tania; Del Duca, Sara; Vassallo, Alberto; Riccardi, Christopher; Zaccaroni, Marco; Mucci, Nadia; Padula, Anna; Emiliani, Giovanni; Palumbo Piccionello, Antonio; Puglia, Anna Maria; Fani, Renato

PEGR: a flexible management platform for reproducible epigenomic and genomic research

Shao, Danying; Kellogg, Gretta D; Nematbakhsh, Ali; Kuntala, Prashant K; Mahony, Shaun; Pugh, B Franklin; Lai, William K M

Recapitulating Cholangiopathy-Associated Necroptotic Cell Death In Vitro Using Human Cholangiocyte Organoids

Shi, Shaojun; Verstegen, Monique M. A.; Roest, Henk P.; Ardisasmita, Arif I.; Cao, Wanlu; Roos, Floris J. M.; Ruiter, Petra E. de; Niemeijer, Marije; Pan, Qiuwei; IJzermans, Jan N. M.; Laan, Luc J. W. van der

Identification and annotation of peptide allergens in Prunus dulcis

Singh, Arshwinder; Upadhyay, Atul Kumar

Identification of Clinical Variants beyond the Exome in Inborn Errors of Metabolism

Soriano-Sexto, Alejandro; Gallego, Diana; Leal, Fátima; Castejón-Fernández, Natalia; Navarrete, Rosa; Alcaide, Patricia; Couce, María L.; Martín-Hernández, Elena; Quijada-Fraile, Pilar; Peña-Quintana, Luis; Yahyaoui, Raquel; Correcher, Patricia; Ugarte, Magdalena; Rodríguez-Pombo, Pilar; Pérez, Belén

Comparative genomics of the black rot pathogen Xanthomonas campestris pv. campestris and non-pathogenic co-inhabitant Xanthomonas melonis from Trinidad reveal unique pathogenicity determinants and secretion system profiles

Stephen Jr, DB; Jayaraman, Jayaraj; Ramsubhag, Adesh; others

Identification of SARS-CoV-2 Omicron variant using spike gene target failure and genotyping assays, Gauteng, South Africa, 2021

Subramoney, Kathleen; Mtileni, Nkhensani; Bharuthram, Avani; Davis, Ashlyn; Kalenga, Beauty; Rikhotso, Mikateko; Maphahlele, Mpho; Giandhari, Jennifer; Naidoo, Yeshnee; Pillay, Sureshnee; Ramphal, Upasana; Ramphal, Yajna; Tegally, Houriiyah; Wilkinson, Eduan; Mohale, Thabo; Ismail, Arshad; Mashishi, Bonolo; Mbenenge, Nonhlanhla; Oliveira, Tulio; Makatini, Zinhle; Fielding, Burtram C.; Treurnicht, Florette K.; Africa, Network for Genomics Surveillance in South

STENCIL: A web templating engine for visualizing and sharing life science datasets

Sun, Qi; Nematbakhsh, Ali; Kuntala, Prashant K.; Kellogg, Gretta; Pugh, B. Franklin; Lai, William K. M.

Chasing Consistency: An Update of the TCP Gene Family of Malus × Domestica

Tabarelli, Mattia; Malnoy, Mickael; Janik, Katrin

Comparative Genome Analysis of 19 Trueperella pyogenes Strains Originating from Different Animal Species Reveal a Genetically Diverse Open Pan-Genome

Thakur, Zoozeal; Vaid, Rajesh Kumar; Anand, Taruna; Tripathi, Bhupendra Nath

Micro-RNA-Regulated SQUAMOSA-PROMOTER BINDING PROTEIN-LIKE (SPL) Gene Expression and Cytokinin Accumulation Distinguish Early-Developing Male and Female Inflorescences in Oil Palm (Elaeis guineensis)

Tregear, James W.; Richaud, Frédérique; Collin, Myriam; Esbelin, Jennifer; Parrinello, Hugues; Cochard, Benoît; Nodichao, Leifi; Morcillo, Fabienne; Adam, Hélène; Jouannic, Stefan

Biogenesis of C. elegans spermatogenesis small RNAs is initiated by a zc3h12a-like ribonuclease

Tsai, Hsin-Yue; Cheng, Hsian-Tang; Tsai, Yi-Ting

A hidden layer of structural variation in transposable elements reveals potential genetic modifiers in human disease-risk loci

Bree, Elisabeth J; Guimarães, Rita L F P; Lundberg, Mischa; Blujdea, Elena R; Rosenkrantz, Jimi L; White, Fred T G; Poppinga, Josse; Ferrer-Raventós, Paula; Schneider, Anne-Fleur E; Clayton, Isabella; Haussler, David; Reinders, Marcel J T; Holstege, Henne; Ewing, Adam D; Moses, Colette; Jacobs, Frank M J

Epigenetic nature of Arabidopsis thaliana telomeres

Vaquero-Sedas, María I; Vega-Palas, Miguel A

Identification Of Taxa and Functional Pathway Information Of Mycobacterium tuberculosis Microbiome And High Throughput Simulation Studies With Mycobacteriophage

Verma, Divya; Bagchi, Preenon; IA, Shylesh Murthy

Expanding the Galaxy's reference data

VijayKrishna, Nagampalli; Joshi, Jayadev; Coraor, Nate; Hillman-Jackson, Jennifer; Bouvier, Dave; Beek, Marius; Eguinoa, Ignacio; Coppens, Frederik; Davis, John; Stolarczyk, Michał; Sheffield, Nathan C.; Gladman, Simon; Cuccuru, Gianmauro; Grüning, Björn; Soranzo, Nicola; Rasche, Helena; Langhorst, Bradley W.; Bernt, Matthias; Fornika, Dan; Lima Morais, David Anderson; Barrette, Michel; Heusden, Peter; Petrillo, Mauro; Puertas-Gallardo, Antonio; Patak, Alex; Hotz, Hans-Rudolf; Blankenberg, Daniel

E. faecalisacquires resistance to antimicrobials and insect immunity via common mechanisms

Wadhawan, Ashima; Silva, Carolina; Nunes, Catarina; Edwards, Andrew; Dionne, Marc

Investigating the determinants of Enterococcus faecalis virulence in Drosophila melanogaster

Wadhawan, Ashima Deepak

The mitochondrial RNA granule modulates manganese-dependent cell toxicity

Werner, E; Gokhale, A; Ackert, M; Xu, C; Wen, Z; Roberts, AM; Roberts, BR; Vrailas-Mortimer, A; Crocker, A; Faundez, V

The Mitochondrial RNA Granule is Necessary for Parkinsonism-Associated Metal Toxicity

Werner, Erica; Gokhale, Avanti; Ackert, Molly; Xu, Chongchong; Wen, Zhexing; Roberts, Anne M; Roberts, Blaine R; Vrailas-Mortimer, Alysia R; Crocker, Amanda J; Faundez, Victor

Discovery and biosynthetic assessment ofStreptomyces ortussp nov. isolated from a deep-sea sponge

Williams, Sam; Back, Catherine; Best, Eleanor; Mantell, Judith; Stach, James; Williams, Tom; Race, Paul; Curnow, Paul

IMA genome‑F17 : Draft genome sequences of an Armillaria species from Zimbabwe, Ceratocystis colombiana, Elsinoë necatrix, Rosellinia necatrix, two genomes of Sclerotinia minor, short‑read genome assemblies and annotations of four Pyrenophora teres isolates from barley grass, and a long-read genome assembly of Cercospora zeina

Wingfield, Brenda D; Berger, Dave K; Coetzee, Martin P A; Duong, Tuan A; Martin, Anke; Pham, Nam Q; Berg, Noelani; Wilken, P Markus; Arun-Chinnappa, Kiruba Shankari; Barnes, Irene; Buthelezi, Sikelela; Dahanayaka, Buddhika Amarasinghe; Durán, Alvaro; Engelbrecht, Juanita; Feurtey, Alice; Fourie, Arista; Fourie, Gerda; Hartley, Jesse; Kabwe, Eugene N K; Maphosa, Mkhululi; Narh Mensah, Deborah L; Nsibo, David L; Potgieter, Lizel; Poudel, Barsha; Stukenbrock, Eva H; Thomas, Chanel; Vaghefi, Niloofar; Welgemoed, Tanya; Wingfield, Michael J

Canonical Workflows to Make Data FAIR

Wittenburg, Peter; Hardisty, Alex; Le Franc, Yann; Mozaffari, Amirpasha; Peer, Limor; Skvortsov, Nikolay A.; Zhao, Zhiming; Spinuso, Alessandro

In-Depth Molecular Profiling Specifies Human Retinal Microglia Identity

Wolf, Julian; Boneva, Stefaniya; Rosmus, Dennis-Dominik; Agostini, Hansjürgen; Schlunck, Günther; Wieghofer, Peter; Schlecht, Anja; Lange, Clemens

Comparative transcriptome analysis of human and murine choroidal neovascularization identifies fibroblast growth factor inducible-14 as phylogenetically conserved mediator of neovascular age-related macular degeneration

Wolf, Julian; Schlecht, Anja; Rosmus, Dennis-Dominik; Boneva, Stefaniya; Agostini, Hansjürgen; Schlunck, Günther; Wieghofer, Peter; Lange, Clemens

Deciphering the Molecular Signature of Human Hyalocytes in Relation to Other Innate Immune Cell Populations

Wolf, Julian; Boneva, Stefaniya; Rosmus, Dennis-Dominik; Agostini, Hansjürgen; Schlunck, Günther; Wieghofer, Peter; Schlecht, Anja; Lange, Clemens

The Human Eye Transcriptome Atlas: A searchable comparative transcriptome database for healthy and diseased human eye tissue

Wolf, Julian; Boneva, Stefaniya; Schlecht, Anja; Lapp, Thabo; Auw-Haedrich, Claudia; Lagrèze, Wolf; Agostini, Hansjürgen; Reinhard, Thomas; Schlunck, Günther; Lange, Clemens

Transcriptional Profiling Provides New Insights into Organ Culture-Induced Changes in Human Donor Corneas

Wolf, Julian; Kammrath Betancor, Paola; Maier, Philip; Heinzelmann, Sonja Ute; Jiang, Jana; Lange, Clemens; Reinhard, Thomas; Schlunck, Günther; Lapp, Thabo

Molecular identification of SARS-CoV-2 variants of concern at urban wastewater treatment plants across South Africa

Yousif, Mukhlid; Rachida, Said; Taukobong, Setshaba; Ndlovu, Nkosenhle; Iwu-Jaja, Chinwe; Howard, Wayne; Moonsamy, Shelina; Mhlambi, Nompilo; Gwala, Sipho; Levy, Joshua; Andersen, Kristian; Scheepers, Cathrine; Gottberg, Anne von; Wolter, Nicole; Ismail, Arshad; Suchard, Melinda; McCarthy, Kerrigan; =the SACCESS network

Ezh2 competes with p53 to license lncRNA Neat1 transcription for inflammasome activation

Yuan, Jia; Zhu, Qingchen; Zhang, Xingli; Wen, Zhenzhen; Zhang, Guiheng; Li, Ni; Pei, Yifei; Wang, Yan; Pei, Siyu; Xu, Jing; Jia, Pan; Peng, Chao; Lu, Wei; Qin, Jun; Cao, Qian; Xiao, Yichuan

Comparative Genomic Hybridization and Transcriptome Sequencing Reveal Genes with Gain in Acute Lymphoblastic Leukemia: JUP Expression Emerges as a Survival-Related Gene

Zapata-García, Jessica Alejandra; Riveros-Magaña, Alma Rocío; Ortiz-Lazareno, Pablo Cesar; Hernández-Flores, Georgina; Jave-Suárez, Luis Felipe; Aguilar-Lemarroy, Adriana

Bacterial key species candidates for biomonitoring peatland burnt in the Giam Siak Kecil-Bukit Batu biosphere reserve, Riau

Zebua, P. K.; Nelvia; Pratiwi, N. W.; Zul, D.

Replication collisions induced by de-repressed S-phase transcription are connected with malignant transformation of adult stem cells

Zhang, Ting; Künne, Carsten; Ding, Dong; Günther, Stefan; Guo, Xinyue; Zhou, Yonggang; Yuan, Xuejun; Braun, Thomas

The role of viral genomics in understanding COVID-19 outbreaks in long-term care facilities

Aggarwal, Dinesh; Myers, Richard; Hamilton, William L.; Bharucha, Tehmina; Tumelty, Niamh M.; Brown, Colin S.; Meader, Emma J.; Connor, Tom; Smith, Darren L.; Bradley, Declan T.; Robson, Samuel; Bashton, Matthew; Shallcross, Laura; Zambon, Maria; Goodfellow, Ian; Chand, Meera; O'Grady, Justin; Török, M. Estée; Peacock, Sharon J.; Page, Andrew J.

Complete genome sequencing of SARS-CoV-2 strains: A pilot survey in Palestine reveals spike mutation H245N

Al-Jawabreh, Amer; Ereqat, Suheir; Dumaidi, Kamal; Al-Jawabreh, Hanan; Nasereddin, Abedelmajeed

Development of a Comprehensive Toxicity Pathway Model for 17α-Ethinylestradiol in Early Life Stage Fathead Minnows (Pimephales promelas)

Alcaraz, Alper James G.; Potěšil, David; Mikulášek, Kamil; Green, Derek; Park, Bradley; Burbridge, Connor; Bluhm, Kerstin; Soufan, Othman; Lane, Taylor; Pipal, Marek; Brinkmann, Markus; Xia, Jianguo; Zdráhal, Zbyněk; Schneider, David; Crump, Doug; Basu, Niladri; Hogan, Natacha; Hecker, Markus

Characterization of the virome associated with Haemagogus mosquitoes in Trinidad, West Indies

Ali, Renee; Jayaraj, Jayaraman; Mohammed, Azad; Chinnaraja, Chinnadurai; Carrington, Christine V F; Severson, David W; Ramsubhag, Adesh

Characterization of the Virome Associated With Haemagogus Mosquitoes in Trinidad, West Indies

Ali, Renee; Jayaraman, Jayaraj; Mohammed, Azad; Chinnaraja, Chinnadurai; Carrington, Christine V. F.; Severson, David W.; Ramsubhag, Adesh

Occurrence of Colibacillosis in Broilers and Its Relationship With Avian Pathogenic Escherichia coli (APEC) Population Structure and Molecular Characteristics

Apostolakos, Ilias; Laconi, Andrea; Mughini-Gras, Lapo; Yapicier, Özlem Şahan; Piccirillo, Alessandra

Whole-genome based strain identification of fowlpox virus directly from cutaneous tissue and propagated virus

Asif, Kinza; O'Rourke, Denise; Legione, Alistair R; Shil, Pollob; Marenda, Marc S; Noormohammadi, Amir H

Phylogenetic Distribution of csp1 Types in Aspergillus fumigatus and Their Correlates to Azole Antifungal Drug Resistance

Bader, Oliver

De Novo Sporophyte Transcriptome Assembly and Functional Annotation in the Endangered Fern Species Vandenboschia speciosa (Willd.) G. Kunkel

Bakkali, Mohammed; Martín-Blázquez, Rubén; Ruiz-Estévez, Mercedes; Garrido-Ramos, Manuel A

Collaboration Between Host and Viral Factors Shape SARS-CoV-2 Evolution

Bamford, Connor G. G.; Broadbent, Lindsay; Aranday-Cortes, Elihu; McCabe, Mary; McKenna, James; Courtney, David; Touzelet, Olivier; Ali, Ahlam; Roberts, Grace; Campos, Guillermo Lopez; Simpson, David; McCaughey, Conall; Fairley, Derek; Mills, Ken; and, Ultan F. Power

Polypharmacology of some medicinal plant metabolites against SARS-CoV-2 and host targets: Molecular dynamics evaluation of NSP9 RNA binding protein

Bandyopadhyay, Suritra; Abiodun, Omobolanle Abimbola; Ogboo, Blessing Chinweotito; Kola-Mustapha, Adeola Tawakalitu; Attah, Emmanuel Ifeanyi; Edemhanria, Lawrence; Kumari, Ankita; Jaganathan, Ravindran; Adelakun, Niyi S.

New Putative Long Non-Coding RNAs (lncRNA) Revealed by Pan-Transcriptome of the Emerging Human Pathogenic Fungus Talaromyces Marneffei

Barbosa, David Aciole; Simeone, Alexandre Santos; Humberto, Ana Carolina; Maria, Yara Natercia Lima Faustino de; Oliveira, Regina Costa de; Jabes, Daniela L.; Nunes, Luiz R.; Menegidio, Fabiano Bezerra

Multidrug-Resistant Klebsiella pneumoniae Clones from Wild Chimpanzees and Termites in Senegal

Baron, Sophie Alexandra; Mediannikov, Oleg; Abdallah, Rim; Yimagou, Edmond Kuete; Medkour, Hacène; Dubourg, Gregory; Elamire, Youssouf; Afouda, Pamela; Ngom, Issa Isaac; Angelakis, Emmanouil; Davoust, Bernard; Diatta, Georges; Barciela, Amanda; Hernandez-Aguilar, R. Adriana; Sokhna, Cheikh; Caputo, Aurelia; Levasseur, Anthony; Rolain, Jean-Marc; Raoult, Didier

Genome accessibility dynamics in response to phosphate limitation is controlled by the PHR1 family of transcription factors in Arabidopsis

Barragán-Rosillo, Alfonso Carlos; Peralta-Alvarez, Carlos Alberto; Ojeda-Rivera, Jonathan Odilón; Arzate-Mejía, Rodrigo G.; Recillas-Targa, Félix; Herrera-Estrella, Luis

Natural Coinfection between Novel Species of Baculoviruses in Spodoptera ornithogalli Larvae

Barrera, Gloria Patricia; Villamizar, Laura Fernanda; Araque, Gustavo Adolfo; Gómez, Juliana Andrea; Guevara, Elsa Judith; Cerrudo, Carolina Susana; Belaich, Mariano Nicolás

The Changes in the p53 Protein across the Animal Kingdom Point to Its Involvement in Longevity

Bartas, Martin; Brázda, Václav; Volná, Adriana; Červeň, Jiří; Pečinka, Petr; Zawacka-Pankau, Joanna E.

RNA-Seq Data Analysis in Galaxy

Batut, Bérénice; Beek, Marius; Doyle, Maria A.; Soranzo, Nicola

Functional Analysis of Non-Genetic Resistance to Platinum in Epithelial Ovarian Cancer Reveals a Role for the MBD3-NuRD Complex in Resistance Development

Bauer, Tabea L.; Collmar, Katrin; Kaltofen, Till; Loeffler, Ann-Katrin; Decker, Lorena; Mueller, Jan; Pinter, Sabine; Eisler, Stephan A.; Mahner, Sven; Fraungruber, Patricia; Kommoss, Stefan; Staebler, Annette; Francis, Lewis; Conlan, R. Steven; Zuber, Johannes; Jeschke, Udo; Trillsch, Fabian; Rathert, Philipp

The SWI/SNF chromatin remodeling complex helps resolve R-loop-mediated transcription–replication conflicts

Bayona-Feliu, Aleix; Barroso, Sonia; Muñoz, Sergio; Aguilera, Andrés

ECTyper: in silico Escherichia coli serotype and species prediction from raw and assembled whole-genome sequence data

Bessonov, Kyrylo; Laing, Chad; Robertson, James; Yong, Irene; Ziebell, Kim; Gannon, Victor P J; Nichani, Anil; Arya, Gitanjali; Nash, John H E; Christianson, Sara

In-Depth Molecular Characterization of Neovascular Membranes Suggests a Role for Hyalocyte-to-Myofibroblast Transdifferentiation in Proliferative Diabetic Retinopathy

Boneva, Stefaniya Konstantinova; Wolf, Julian; Hajdú, Rozina Ida; Prinz, Gabriele; Salié, Henrike; Schlecht, Anja; Killmer, Saskia; Laich, Yannik; Faatz, Henrik; Lommatzsch, Albrecht; Busch, Martin; Bucher, Felicitas; Stahl, Andreas; Böhringer, Daniel; Bengsch, Bertram; Schlunck, Günther; Agostini, Hansjürgen; Lange, Clemens A K

Critical Assessment of Metaproteome Investigation (CAMPI): A Multi-Lab Comparison of Established Workflows

Bossche, Tim Van Den; Kunath, Benoit J.; Schallert, Kay; Schäpe, Stephanie S.; Abraham, Paul E.; Armengaud, Jean; Arntzen, Magnus Ø; Bassignani, Ariane; Benndorf, Dirk; Fuchs, Stephan; Giannone, Richard J.; Griffin, Timothy J.; Hagen, Live H.; Halder, Rashi; Henry, Céline; Hettich, Robert L.; Heyer, Robert; Jagtap, Pratik; Jehmlich, Nico; Jensen, Marlene; Juste, Catherine; Kleiner, Manuel; Langella, Olivier; Lehmann, Theresa; Leith, Emma; May, Patrick; Mesuere, Bart; Miotello, Guylaine; Peters, Samantha L.; Pible, Olivier; Reichl, Udo; Renard, Bernhard Y.; Schiebenhoefer, Henning; Scryba, Alexander; Tanca, Alessandro; Trappe, Kathrin; Trezzi, Jean-Pierre; Uzzau, Sergio; Verschaffelt, Pieter; Bergen, Martin von; Wilmes, Paul; Wolf, Maximilian; Martens, Lennart; Muth, Thilo

Genome-wide investigation of the dynamic changes of epigenome modifications after global DNA methylation editing

Broche, Julian; Kungulovski, Goran; Bashtrykov, Pavel; Rathert, Philipp; Jeltsch, Albert

The FTZ-F1 gene encodes two functionally distinct nuclear receptor isoforms in the ectoparasitic copepod salmon louse (Lepeophtheirus salmonis)

Brunet, Joakim; Eichner, Christiane; Male, Rune

Isoform 2 of DLG2 gene as a possible candidate tumour suppressor of neuroblastoma

Camargo Romera, Paula

Characterization of Komagataeibacter Isolate Reveals New Prospects in Waste Stream Valorization for Bacterial Cellulose Production

Cannazza, Pietro; Rissanen, Antti J; Guizelini, Dieval; Losoi, Pauli; Sarlin, Essi; Romano, Diego; Santala, Ville; Mangayil, Rahul

Evolutionary Trajectories toward Ceftazidime-Avibactam Resistance in Klebsiella pneumoniae Clinical Isolates

Carattoli, Alessandra; Arcari, Gabriele; Bibbolino, Giulia; Sacco, Federica; Tomolillo, Dario; Lella, Federica Maria Di; Trancassini, Maria; Faino, Luigi; Venditti, Mario; Antonelli, Guido; Raponi, Giammarco

A truly unbiased in vitro assay to profile off-target activity of one or more target-specific programmable nucleases in cells (abnoba-seq)

CATHOMEN, Toni; HAAS, Simone Alexandra; HILDENBEUTEL, Markus; MUSSOLINO, Claudio; BOERRIES, Melanie; ANDRIEUX, Geoffroy

First complete mitochondrial genome of Rhodinia species (Lepidoptera: Saturniidae): genome description and phylogenetic implication

Chen, Dong-Bin; Zhang, Ru-Song; Jin, Xiang-Dong; Yang, Jian; Li, Peng; Liu, Yan-Qun

Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities

Chiara, Matteo; D’Erchia, Anna Maria; Gissi, Carmela; Manzari, Caterina; Parisi, Antonio; Resta, Nicoletta; Zambelli, Federico; Picardi, Ernesto; Pavesi, Giulio; Horner, David S; Pesole, Graziano

Complete mitochondrial genomes of three reef forming Acropora corals (Acroporidae, Scleractinia) from Chagos Archipelago, Indian Ocean

Colin, Luigi; Yesson, Chris; Head, Catherine E I

Next-generation sequencing of DNA from resting eggs: signatures of eutrophication in a lake's sediment

Cordellier, Mathilde; Wojewodzic, Marcin W.; Wessels, Martin; Kuster, Christian; Elert, Eric von

Helios represses megakaryocyte priming in hematopoietic stem and progenitor cells

Cova, Giovanni; Taroni, Chiara; Deau, Marie-Céline; Cai, Qi; Mittelheisser, Vincent; Philipps, Muriel; Jung, Matthieu; Cerciat, Marie; Gras, Stéphanie Le; Thibault-Carpentier, Christelle; Jost, Bernard; Carlsson, Leif; Thornton, Angela M.; Shevach, Ethan M.; Kirstetter, Peggy; Kastner, Philippe; Chan, Susan

Dual-Transcriptomic, Microscopic, and Biocontrol Analyses of the Interaction Between the Bioeffector Pythium oligandrum and the Pythium Soft-Rot of Ginger Pathogen Pythium myriotylum

Daly, Paul; Chen, Siqiao; Xue, Taiqiang; Li, Jingjing; Sheikh, Taha Majid Mahmood; Zhang, Qimeng; Wang, Xuehai; Zhang, Jinfeng; Fitzpatrick, David A; McGowan, Jamie; Shi, Xiujuan; Deng, Sheng; Jiu, Min; Zhou, Dongmei; Druzhinina, Irina S; Wei, Lihui

Small Conductance Ca2 +-Activated K+ (SK) Channel mRNA Expression in Human Atrial and Ventricular Tissue: Comparison Between Donor, Atrial Fibrillation and Heart Failure Tissue

Darkow, Elisa; Nguyen, Thong T.; Stolina, Marina; Kari, Fabian A.; Schmidt, Constanze; Wiedmann, Felix; Baczkó, István; Kohl, Peter; Rajamani, Sridharan; Ravens, Ursula; Peyronnet, Rémi

Photophore Distribution and Enzymatic Diversity Within the Photogenic Integument of the Cookie-Cutter Shark Isistius brasiliensis (Chondrichthyes: Dalatiidae)

Delroisse, Jérôme; Duchatelet, Laurent; Flammang, Patrick; Mallefet, Jérôme

A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation

Dorone, Yanniv; Boeynaems, Steven; Flores, Eduardo; Jin, Benjamin; Hateley, Shannon; Bossi, Flavia; Lazarus, Elena; Pennington, Janice G.; Michiels, Emiel; De Decker, Mathias; Vints, Katlijn; Baatsen, Pieter; Bassel, George W.; Otegui, Marisa S.; Holehouse, Alex S.; Exposito-Alonso, Moises; Sukenik, Shahar; Gitler, Aaron D.; Rhee, Seung Y.

IMA Genome - F15 : Draft genome assembly of Fusarium pilosicola, Meredithiella fracta, Niebla homalea, Pyrenophora teres hybrid WAC10721, and Teratosphaeria viscida

Duong, Tuan Anh; Aylward, Janneke; Ametrano, Claudio Gennaro; Poudel, Barsha; Santana, Quentin Carlo; Wilken, Pieter Markus; Martin, Anke; Arun-Chinnappa, Kiruba Shankari; Vos, Lieschen; DiStefano, Isabel; Grewe, Felix; Huhndorf, Sabine; Lumbsch, Helge Thorsten; Rakoma, Jostina Raesetsa; Poudel, Barsha; Steenkamp, Emma Theodora; Sun, Yukun; Nest, Magriet A; Wingfield, Michael John; Yilmaz, Neriman; Wingfield, Brenda Diana

Uncovering the RNA-binding protein landscape in the pluripotency network of human embryonic stem cells

Dvir, Shlomi; Argoetti, Amir; Lesnik, Chen; Roytblat, Mark; Shriki, Kohava; Amit, Michal; Hashimshony, Tamar; Mandel-Gutfreund, Yael

ZC3H4 restricts non-coding transcription in human cells

Estell, Chris; Davidson, Lee; Steketee, Pieter C.; Monier, Adam; West, Steven

The endophytic microbiota of Citrus limon is transmitted from seed to shoot highlighting differences of bacterial and fungal community structures

Faddetta, Teresa; Abbate, Loredana; Alibrandi, Pasquale; Arancio, Walter; Siino, Davide; Strati, Francesco; Filippo, Carlotta De; Bosco, Sergio Fatta Del; Carimi, Francesco; Puglia, Anna Maria; Cardinale, Massimiliano; Gallo, Giuseppe; Mercati, Francesco

A Systematic Evaluation of Semispecific Peptide Search Parameter Enables Identification of Previously Undescribed N-Terminal Peptides and Conserved Proteolytic Processing in Cancer Cell Lines

Fahrner, Matthias; Kook, Lucas; Fröhlich, Klemens; Biniossek, Martin L.; Schilling, Oliver

Microencapsulation of a Pseudomonas Strain (VUPF506) in Alginate-Whey Protein-Carbon Nanotubes and Next-Generation Sequencing Identification of This Strain

Fathi, Fariba; Saberi Riseh, Roohallah; Khodaygan, Pejman; Hosseini, Samin; Skorik, Yury A

FIBCD1 is a Conserved Receptor for Chondroitin Sulphate Proteoglycans of the Brain Extracellular Matrix and a Candidate Gene for a Complex Neurodevelopmental Disorder

Fell, Christopher W.; Hagelkruys, Astrid; Cicvaric, Ana; Horrer, Marion; Liu, Lucy; Li, Joshua Shing Shun; Stadlmann, Johannes; Polyansky, Anton A.; Mereiter, Stefan; Tejada, Miguel Angel; Kokotović, Tomislav; Scaramuzza, Angelica; Twyman, Kimberly A.; Morrow, Michelle M.; Juusola, Jane; Yan, Huifang; Wang, Jingmin; Burmeister, Margit; Andersen, Thomas Levin; Wirnsberger, Gerald; Holmskov, Uffe; Perrimon, Norbert; Zagrović, Bojan; Monje, Francisco J.; Moeller, Jesper Bonnet; Penninger, Josef M.; Nagy, Vanja

Scarless engineering of the Drosophila genome near any site-specific integration site

Feng, Siqian; Lu, Shan; Grueber, Wesley B.; Mann, Richard S.

Taxonomic Evaluation of the Heyndrickxia (Basonym Bacillus) sporothermodurans Group (H. sporothermodurans, H. vini, H. oleronia) Based on Whole Genome Sequences

Fiedler, Gregor; Herbstmann, Anna-Delia; Doll, Etienne; Wenning, Mareike; Brinks, Erik; Kabisch, Jan; Breitenwieser, Franziska; Lappann, Martin; Böhnlein, Christina; Franz, Charles M. A. P.

Moving translational mass spectrometry imaging towards transparent and reproducible data analyses: A case study of an urothelial cancer cohort analyzed in the Galaxy framework

Föll, Melanie Christine; Volkmann, Veronika; Enderle-Ammour, Kathrin; Wilhelm, Konrad; Guo, Dan; Vitek, Olga; Bronsert, Peter; Schilling, Oliver

Complex-Type N-Glycans Influence the Root Hair Landscape of Arabidopsis Seedlings by Altering the Auxin Output

Frank, Manuel; Kaulfürst-Soboll, Heidi; Fischer, Kerstin; Schaewen, Antje

Identification of pathological transcription in autosomal dominant polycystic kidney disease epithelia

Friedrich, Sebastian; Müller, Hannah; Riesterer, Caroline; Schüller, Hannah; Friedrich, Katja; Wörner, Carlotta Leonie; Busch, Tilman; Viau, Amandine; Kuehn, E. Wolfgang; Köttgen, Michael; Hofherr, Alexis

Tryptophan metabolism drives dynamic immunosuppressive myeloid states in IDH-mutant gliomas

Friedrich, Mirco; Sankowski, Roman; Bunse, Lukas; Kilian, Michael; Green, Edward; Ramallo Guevara, Carina; Pusch, Stefan; Poschet, Gernot; Sanghvi, Khwab; Hahn, Markus; Bunse, Theresa; Münch, Philipp; Gegner, Hagen M.; Sonner, Jana K.; Landenberg, Anna; Cichon, Frederik; Aslan, Katrin; Trobisch, Tim; Schirmer, Lucas; Abu-Sammour, Denis; Kessler, Tobias; Ratliff, Miriam; Schrimpf, Daniel; Sahm, Felix; Hopf, Carsten; Heiland, Dieter H.; Schnell, Oliver; Beck, Jürgen; Böttcher, Chotima; Fernandez-Zapata, Camila; Priller, Josef; Heiland, Sabine; Gutcher, Ilona; Quintana, Francisco J.; Deimling, Andreas; Wick, Wolfgang; Prinz, Marco; Platten, Michael

Identification of X-chromosomal genes that drive sex differences in embryonic stem cells through a hierarchical CRISPR screening approach

Genolet, Oriana; Monaco, Anna A.; Dunkel, Ilona; Boettcher, Michael; Schulz, Edda G.

Highly Efficient Genome Modification of Cultured Primordial Germ Cells with Lentiviral Vectors to Generate Transgenic Songbirds

Gessara, Ivana; Dittrich, Falk; Hertel, Moritz; Hildebrand, Staffan; Pfeifer, Alexander; Frankl-Vilches, Carolina; McGrew, Mike; Gahr, Manfred

Conservation and divergence in gene regulation between mouse and human immune cells deserves equal emphasis

Gilbertson, Sarah E.; Weinmann, Amy S.

Distal and proximal cis-regulatory elements sense X-chromosomal dosage and developmental state at theXistlocus

Gjaltema, Rutger A. F.; Schwämmle, Till; Kautz, Pauline; Robson, Michael; Schöpflin, Robert; Lustig, Liat Ravid; Brandenburg, Lennart; Dunkel, Ilona; Vechiatto, Carolina; Ntini, Evgenia; Mutzel, Verena; Schmiedel, Vera; Marsico, Annalisa; Mundlos, Stefan; Schulz, Edda G.

Limited access to antigen drives generation of early B cell memory while restraining the plasmablast response

Glaros, Vassilis; Rauschmeier, René; Artemov, Artem V.; Reinhardt, Annika; Ols, Sebastian; Emmanouilidi, Aikaterini; Gustafsson, Charlotte; You, Yuanyuan; Mirabello, Claudio; Björklund, Åsa K.; Perez, Laurent; King, Neil P.; Månsson, Robert; Angeletti, Davide; Loré, Karin; Adameyko, Igor; Busslinger, Meinrad; Kreslavsky, Taras

Decitabine Induces Gene Derepression on Monosomic Chromosomes: In Vitro and In Vivo Effects in Adverse-Risk Cytogenetics AML

Greve, Gabriele; Schüler, Julia; Grüning, Björn A.; Berberich, Bettina; Stomper, Julia; Zimmer, Dennis; Gutenkunst, Lea; Bönisch, Ulrike; Meier, Ruth; Blagitko-Dorfs, Nadja; Grishina, Olga; Pfeifer, Dietmar; Weichenhan, Dieter; Plass, Christoph; Lübbert, Michael

Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine

Gu, Qiang; Kumar, Anup; Bray, Simon; Creason, Allison; Khanteymoori, Alireza; Jalili, Vahid; Grüning, Björn; Goecks, Jeremy

3D RNA-seq: a powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists

Guo, Wenbin; Tzioutziou, Nikoleta A; Stephen, Gordon; Milne, Iain; Calixto, Cristiane Pg; Waugh, Robbie; Brown, John W S; Zhang, Runxuan

Eikenella glucosivorans sp. nov., isolated from a human throat swab, and emendation of the genus Eikenella to include saccharolytic species

Hering, Silvio; Jansson, Moritz K.; Buhl, Michael E. J.

Proximity to injury, but neither number of nuclei nor ploidy define pathological adaptation and plasticity in cardiomyocytes

Hesse, Michael; Bednarz, Rebecca; Carls, Esther; Becker, Cora; Bondareva, Olga; Lother, Achim; Geisen, Caroline; Dreßen, Martina; Krane, Markus; Roell, Wilhelm; Hein, Lutz; Fleischmann, Bernd K.; Gilsbach, Ralf

Burkholderiaceae Are Key Acetate Assimilators During Complete Denitrification in Acidic Cryoturbated Peat Circles of the Arctic Tundra

Hetz, Stefanie A.; Horn, Marcus A.

ActivinA Induced SMAD1/5 Signaling in an iPSC Derived EC Model of Fibrodysplasia Ossificans Progressiva (FOP) Can Be Rescued by the Drug Candidate Saracatinib

Hildebrandt, Susanne; Kampfrath, Branka; Fischer, Kristin; Hildebrand, Laura; Haupt, Julia; Stachelscheid, Harald; Knaus, Petra

Transcriptome-wide in vivo mapping of cleavage sites for the compact cyanobacterial ribonuclease E reveals insights into its function and substrate recognition

Hoffmann, Ute A; Heyl, Florian; Rogh, Said N; Wallner, Thomas; Backofen, Rolf; Hess, Wolfgang R; Steglich, Claudia; Wilde, Annegret

A Genome-Wide CRISPR/Cas9 Screen Reveals the Requirement of Host Sphingomyelin Synthase 1 for Infection with Pseudorabies Virus Mutant gD–Pass

Hölper, Julia E.; Grey, Finn; Baillie, John Kenneth; Regan, Tim; Parkinson, Nicholas J.; Höper, Dirk; Thamamongood, Thiprampai; Schwemmle, Martin; Pannhorst, Katrin; Wendt, Lisa; Mettenleiter, Thomas C.; Klupp, Barbara G.

Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research

Hufsky, Franziska; Lamkiewicz, Kevin; Almeida, Alexandre; Aouacheria, Abdel; Arighi, Cecilia; Bateman, Alex; Baumbach, Jan; Beerenwinkel, Niko; Brandt, Christian; Cacciabue, Marco; Chuguransky, Sara; Drechsel, Oliver; Finn, Robert D; Fritz, Adrian; Fuchs, Stephan; Hattab, Georges; Hauschild, Anne-Christin; Heider, Dominik; Hoffmann, Marie; Hölzer, Martin; Hoops, Stefan; Kaderali, Lars; Kalvari, Ioanna; Kleist, Max; Kmiecinski, Renó; Kühnert, Denise; Lasso, Gorka; Libin, Pieter; List, Markus; Löchel, Hannah F; Martin, Maria J; Martin, Roman; Matschinske, Julian; McHardy, Alice C; Mendes, Pedro; Mistry, Jaina; Navratil, Vincent; Nawrocki, Eric P; O'Toole, Áine Niamh; Ontiveros-Palacios, Nancy; Petrov, Anton I; Rangel-Pineros, Guillermo; Redaschi, Nicole; Reimering, Susanne; Reinert, Knut; Reyes, Alejandro; Richardson, Lorna; Robertson, David L; Sadegh, Sepideh; Singer, Joshua B; Theys, Kristof; Upton, Chris; Welzel, Marius; Williams, Lowri; Marz, Manja

Mutational bias in spermatogonia impacts the anatomy of regulatory sites in the human genome

Kaiser, Vera B.; Talmane, Lana; Kumar, Yatendra; Semple, Fiona; MacLennan, Marie; FitzPatrick, David R.; Taylor, Martin S.; and, Colin A. Semple

Antibody escape and global spread of SARS-CoV-2 lineage A.27

Kaleta, Tamara; Kern, Lisa; Hong, Samuel; Hölzer, Martin; Kochs, Georg; Beer, Julius; Schnepf, Daniel; Schwemmle, Martin; Bollen, Nena; Kolb, Philipp; Huber, Magdalena; Ulferts, Svenja; Weigang, Sebastian; Dudas, Gytis; Wittig, Alice; Jaki, Lena; Padane, Abdou; Lagare, Adamou; Salou, Mounerou; Ozer, Egon; Nnaemeka, Ndodo; Odoom, John; Rutayisire, Robert; Benkahla, Alia; Akoua-Koffi, Chantal; Ouedraogo, Abdoul-Salam; SIMON-LORIERE, Etienne; Enouf, Vincent; Kröger, Stefan; Calvignac-Spencer, Sébastien; Baele, Guy; Panning, Marcus; Fuchs, Jonas

Gene expression profiling of epidermal cell types in C. elegans using Targeted DamID

Katsanos, Dimitris; Ferrando-Marco, Mar; Razzaq, Iqrah; Aughey, Gabriel; Southall, Tony D.; Barkoulas, Michalis

Genome-wide identification of the BURP domain-containing genes in Phaseolus vulgaris

Kavas, Musa; Yıldırım, Kubilay; Seçgin, Zafer; Abdulla, Mohamed Farah; Gökdemir, Gökhan

Overexpression of human BAG3P209L in mice causes restrictive cardiomyopathy

Kimura, Kenichi; Ooms, Astrid; Graf-Riesen, Kathrin; Kuppusamy, Maithreyan; Unger, Andreas; Schuld, Julia; Daerr, Jan; Lother, Achim; Geisen, Caroline; Hein, Lutz; Takahashi, Satoru; Li, Guang; Röll, Wilhelm; Bloch, Wilhelm; Ven, Peter F. M.; Linke, Wolfgang A.; Wu, Sean M.; Huesgen, Pitter F.; Höhfeld, Jörg; Fürst, Dieter O.; Fleischmann, Bernd K.; Hesse, Michael

Resistome of a carbapenemase-producing novel ST232 Klebsiella michiganensis isolate from urban hospital effluent in South Africa

King, T. L.; Schmidt, S.; Thakur, S.; Fedorka-Cray, P.; Keelara, S.; Harden, L.; Essack, S. Y.

Thrombospondin-4 Is a Soluble Dermal Inflammatory Signal That Selectively Promotes Fibroblast Migration and Keratinocyte Proliferation for Skin Regeneration and Wound Healing

Klaas, Mariliis; Mäemets-Allas, Kristina; Heinmäe, Elizabeth; Lagus, Heli; Cárdenas-León, Claudia Griselda; Arak, Terje; Eller, Mart; Kingo, Külli; Kankuri, Esko; Jaks, Viljar

Pruriception and neuronal coding in nociceptor subtypes in human and nonhuman primates

Klein, Amanda; Solinski, Hans Jürgen; Malewicz, Nathalie M.; Ieong, Hada Fong-ha; Sypek, Elizabeth I.; Shimada, Steven G.; Hartke, Timothy V.; Wooten, Matthew; Wu, Gang; Dong, Xinzhong; Hoon, Mark A.; LaMotte, Robert H.; Ringkamp, Matthias

Eplerenone Improves Pulmonary Vascular Remodeling and Hypertension by Inhibition of the Mineralocorticoid Receptor in Endothelial Cells

Kowalski, Jessica; Deng, Lisa; Suennen, Chiara; Koca, Duygu; Meral, David; Bode, Christoph; Hein, Lutz; Lother, Achim

The Polycomb group methyltransferase StE(z)2 and deposition of H3K27me3 and H3K4me3 regulate the expression of tuberization genes in potato

Kumar, Amit; Kondhare, Kirtikumar R; Malankar, Nilam N; Banerjee, Anjan K

Tool recommender system in Galaxy using deep learning

Kumar, Anup; Rasche, Helena; Grüning, Björn; Backofen, Rolf

A Comprehensive Molecular and Epidemiological Characterization of Influenza Viruses Circulating 2016-2020 in North Macedonia

Kuzmanovska, Maja; Boshevska, Golubinka; Janchevska, Elizabeta; Buzharova, Teodora; Simova, Milica; Peshnacka, Aneta; Nikolovska, Gordana; Kochinski, Dragan; Ilioska, Radica Stoleska; Stavridis, Kristina; Mikikj, Vladimir; Kuzmanovska, Gordana; Memeti, Shaban; Gjorgoski, Icko

Complete Genome Sequences of Six Salmonella enterica Strains (S. enterica subsp. arizonae, S. enterica subsp. diarizonae, and S. enterica subsp. salamae) Isolated from Poultry Houses

Lamas, Alexandre; Regal, Patricia; Cepeda, Alberto; Franco, Carlos Manuel

All-trans retinoic acid induces synaptopodin-dependent metaplasticity in mouse dentate granule cells

Lenz, Maximilian; Eichler, Amelie; Kruse, Pia; Muellerleile, Julia; Deller, Thomas; Jedlicka, Peter; Vlachos, Andreas

The mitochondrial genome of Qinghuang_1, the first modern improved strain of Chinese oak silkworm, Antheraea pernyi (Lepidoptera: Saturniidae)

Li, X.-Y.; Liu, Y.-C.; Zhang, R.-S.; Chen, D.-B.; Chen, M.-M.; Li, Y.-P.; Liu, Y.-Q.; Qin, L.

The diversity among the species Tetragenococcus halophilus including new isolates from a lupine seed fermentation

Link, Tobias; Vogel, Rudi F; Ehrmann, Matthias A

DenovoProfiling: a webserver for de novo generated molecule library profiling

Liu, Zhihong; Du, Jiewen; Liu, Bingdong; Cui, Zongbin; Fang, Jiansong; Xie, Liwei

Genomic and Proteomic Study of Andreprevotia ripae Isolated from an Anthill Reveals an Extensive Repertoire of Chitinolytic Enzymes

Lorentzen, Silje B; Arntzen, Magnus Ø; Hahn, Thomas; Tuveng, Tina R; Sørlie, Morten; Zibek, Susanne; Vaaje-Kolstad, Gustav; Eijsink, Vincent G H

3D Genome of macaque fetal brain reveals evolutionary innovations during primate corticogenesis

Luo, Xin; Liu, Yuting; Dang, Dachang; Hu, Ting; Hou, Yingping; Meng, Xiaoyu; Zhang, Fengyun; Li, Tingting; Wang, Can; Li, Min; Wu, Haixu; Shen, Qiushuo; Hu, Yan; Zeng, Xuerui; He, Xiechao; Yan, Lanzhen; Zhang, Shihua; Li, Cheng; Su, Bing

SimText: a text mining framework for interactive analysis and visualization of similarities among biomedical entities

Macnee, Marie; Pérez-Palma, Eduardo; Schumacher-Bass, Sarah; Dalton, Jarrod; Leu, Costin; Blankenberg, Daniel; Lal, Dennis

Experimental Evolution of Anticipatory Regulation in Escherichia coli

Mahilkar, Anjali; Venkataraman, Pavithra; Mall, Akshat; Saini, Supreet

Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring

Maier, Wolfgang; Bray, Simon; Beek, Marius van den; Bouvier, Dave; Coraor, Nathaniel; Miladi, Milad; Singh, Babita; Argila, Jordi Rambla De; Baker, Dannon; Roach, Nathan; Gladman, Simon; Coppens, Frederik; Martin, Darren; Lonie, Andrew; Gruning, Bjorn; Pond, Sergei Kosakovsky; Nekrutenko, Anton

Ready-to-use public infrastructure for global SARS-CoV-2 monitoring

Maier, Wolfgang; Bray, Simon; Beek, Marius; Bouvier, Dave; Coraor, Nathan; Miladi, Milad; Singh, Babita; De Argila, Jordi Rambla; Baker, Dannon; Roach, Nathan; Gladman, Simon; Coppens, Frederik; Martin, Darren P.; Lonie, Andrew; Grüning, Björn; Kosakovsky Pond, Sergei L.; Nekrutenko, Anton

De novo transcriptome assembly, functional annotation and characterization of the Atlantic bluefin tuna (Thunnus thynnus) larval stage

Marisaldi, Luca; Basili, Danilo; Gioacchini, Giorgia; Canapa, Adriana; Carnevali, Oliana

Viral S protein histochemistry reveals few potential SARS-CoV-2 entry sites in human ocular tissues

Martin, Gottfried; Wolf, Julian; Lapp, Thabo; Agostini, Hansjürgen T; Schlunck, Günther; Auw-Hädrich, Claudia; Lange, Clemens A K

DataPLANT – Ein NFDI-Konsortium der Pflanzen-Grundlagenforschung

Martins Rodrigues, Cristina; Suchodoletz, Dirk; Mühlhaus, Timo; Krüger, Jens; Usadel, Björn

Genomics and transcriptomics of epizoic Seisonidea (Rotifera, syn. Syndermata) reveal strain formation and gradual gene loss with growing ties to the host

Mauer, Katharina M.; Schmidt, Hanno; Dittrich, Marco; Fröbius, Andreas C.; Hellmann, Sören Lukas; Zischler, Hans; Hankeln, Thomas; Herlyn, Holger

High-quality whole-genome sequence analysis of Lactobacillus paragasseri UBLG-36 reveals oxalate-degrading potential of the strain

Mehra, Yogita; Viswanathan, Pragasam

ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework

Mehta, Subina; Crane, Marie; Leith, Emma; Batut, Bérénice; Hiltemann, Saskia; Arntzen, Magnus Ø; Kunath, Benoit J; Pope, Phillip B; Delogu, Francesco; Sajulga, Ray; Kumar, Praveen; Johnson, James E; Griffin, Timothy J; Jagtap, Pratik D

ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework

Mehta, Subina; Crane, Marie; Leith, Emma; Batut, Bérénice; Hiltemann, Saskia; Arntzen, Magnus Ø; Kunath, Benoit J.; Delogu, Francesco; Sajulga, Ray; Kumar, Praveen; Johnson, James E.; Griffin, Timothy J.; Jagtap, Pratik D.

Updates on metaQuantome Software for Quantitative Metaproteomics

Mehta, Subina; Kumar, Praveen; Crane, Marie; Johnson, James E.; Sajulga, Ray; Nguyen, Dinh Duy An; McGowan, Thomas; Arntzen, Magnus Ø.; Griffin, Timothy J.; Jagtap, Pratik D.

The temperature-regulated DEAD-box RNA helicase CrhR interactome: autoregulation and photosynthesis-related transcripts

Migur, Anzhela; Heyl, Florian; Fuss, Janina; Srikumar, Afshan; Huettel, Bruno; Steglich, Claudia; Prakash, Jogadhenu S. S.; Reinhardt, Richard; Backofen, Rolf; Owttrim, George W.; Hess, Wolfgang R.

Sediment Plasmidome of the Gulfs of Kathiawar Peninsula and Arabian Sea: Insights Gained from Metagenomics Data

Mootapally, Chandrashekar; Mahajan, Mayur S.; Nathani, Neelam M.

Expression Atlas update: gene and protein expression in multiple species

Moreno, Pablo; Fexova, Silvie; George, Nancy; Manning, Jonathan R.; Miao, Zhichiao; Mohammed, Suhaib; Muñoz-Pomer, Alfonso; Fullgrabe, Anja; Bi, Yalan; Bush, Natassja; Iqbal, Haider; Kumbham, Upendra; Solovyev, Andrey; Zhao, Lingyun; Prakash, Ananth; García-Seisdedos, David; Kundu, Deepti J.; Wang, Shengbo; Walzer, Mathias; Clarke, Laura; Osumi-Sutherland, David; Tello-Ruiz, Marcela Karey; Kumari, Sunita; Ware, Doreen; Eliasova, Jana; Arends, Mark J.; Nawijn, Martijn C.; Meyer, Kerstin; Burdett, Tony; Marioni, John; Teichmann, Sarah; Vizcaíno, Juan Antonio; Brazma, Alvis; Papatheodorou, Irene

User-friendly, scalable tools and workflows for single-cell RNA-seq analysis

Moreno, Pablo; Huang, Ni; Manning, Jonathan R.; Mohammed, Suhaib; Solovyev, Andrey; Polanski, Krzysztof; Bacon, Wendi; Chazarra, Ruben; Talavera-López, Carlos; Doyle, Maria A.; Marnier, Guilhem; Grüning, Björn; Rasche, Helena; George, Nancy; Fexova, Silvie Korena; Alibi, Mohamed; Miao, Zhichao; Perez-Riverol, Yasset; Haeussler, Maximilian; Brazma, Alvis; Teichmann, Sarah; Meyer, Kerstin B.; Papatheodorou, Irene

Direct Diagnosis of Echovirus 12 Meningitis Using Metagenomic Next Generation Sequencing

Morsli, Madjid; Zandotti, Christine; Morand, Aurelie; Colson, Philippe; Drancourt, Michel

Draft Genome Sequence of the Mucin Degrader Clostridium tertium WC0709

Musmeci, Eliana; Candeliere, Francesco; Amaretti, Alberto; Rossi, Maddalena; Raimondi, Stefano

Draft genome of a biparental beetle species, Lethrus apterus

Nagy, Nikoletta A.; Rácz, Rita; Rimington, Oliver; Póliska, Szilárd; Orozco-terWengel, Pablo; Bruford, Michael W.; Barta, Zoltán

Direct impact of commonly used dietary emulsifiers on human gut microbiota

Naimi, Sabrine; Viennois, Emilie; Gewirtz, Andrew T.; Chassaing, Benoit

Bisulfite-free epigenomics and genomics of single cells through methylation-sensitive restriction

Niemöller, Christoph; Wehrle, Julius; Riba, Julian; Claus, Rainer; Renz, Nathalie; Rhein, Janika; Bleul, Sabine; Stosch, Juliane M.; Duyster, Justus; Plass, Christoph; Lutsik, Pavlo; Lipka, Daniel B.; Lübbert, Michael; Becker, Heiko

An inducible transposon mutagenesis approach for the intracellular human pathogen Chlamydia trachomatis

O'Neill, Colette E; Skilton, Rachel J; Forster, Jade; Cleary, David W; Pearson, Sarah A; Lampe, David J; Thomson, Nicholas R; Clarke, Ian N

Cheminformatic Characterization of Natural Antimicrobial Products for the Development of New Lead Compounds

Oselusi, Samson Olaitan; Christoffels, Alan; Egieyeh, Samuel Ayodele

Using Galaxy to Perform Large-Scale Interactive Data Analyses—An Update

Ostrovsky, Alexander; Hillman‐Jackson, Jennifer; Bouvier, Dave; Clements, Dave; Afgan, Enis; Blankenberg, Daniel; Schatz, Michael C.; Nekrutenko, Anton; Taylor, James; Team, the Galaxy; Lariviere, Delphine

Fibropapillomatosis and Chelonid Alphaherpesvirus 5 Infection in Kemp's Ridley Sea Turtles (Lepidochelys kempii)

Page-Karjian, Annie; Whitmore, Liam; Stacy, Brian A.; Perrault, Justin R.; Farrell, Jessica A.; Shaver, Donna J.; Walker, J. Shelby; Frandsen, Hilary R.; Rantonen, Elina; Harms, Craig A.; Norton, Terry M.; Innis, Charles; Yetsko, Kelsey; Duffy, David J.

Temperature and Nutrient Limitations Decrease Transfer of Conjugative IncP-1 Plasmid pKJK5 to Wild Escherichia coli Strains

Pallares-Vega, Rebeca; Macedo, Gonçalo; Brouwer, Michael S. M.; Leal, Lucia Hernandez; Maas, Peter van der; Loosdrecht, Mark C. M. van; Weissbrodt, David G.; Heederik, Dick; Mevius, Dik; Schmitt, Heike

A Standardized Workflow Based on the STAVIRO Unbaited Underwater Video System for Monitoring Fish and Habitat Essential Biodiversity Variables in Coastal Areas

Pelletier, Dominique; Roos, David; Bouchoucha, Marc; Schohn, Thomas; Roman, William; Gonson, Charles; Bockel, Thomas; Carpentier, Liliane; Preuss, Bastien; Powell, Abigail; Garcia, Jessica; Gaboriau, Matthias; Cadé, Florent; Royaux, Coline; Bras, Yvan Le; Reecht, Yves

Discovery of lipotoxicity-sensitive transcription factors in non-alcoholic steatohepatitis