| 28 September 2023 | New Paper "Integrative meta-omics in Galaxy and beyond" | Schiml *et al.* present three integrative meta-omics workflows, developed in Galaxy, for enhanced analysis and integration of metagenomics, metatranscriptomics, and metaproteomics, combined with a newly developed web-application, ViMO (Visualizer for Meta-Omics) to analyse metabolisms in complex microbial communities. |
| 28 September 2023 | Time to celebrate! | Galaxy having grown up and matured - happy 18th birthday! |
| 28 September 2023 | 1st BioNT Training workshop - A practical introduction to bioinformatics and RNA-seq using Galaxy | BioNT delivered its first training workshop, A practical introduction to bioinformatics and RNA-seq using Galaxy, from 4th to 8th of September, 2023. This post reports this workshop's organisation, the applicants and participants, as well as their feedback about it. |
| 27 September 2023 | Galaxy admin training | Galaxy Admin Training from April 17th to 21st in Ghent, Belgium. |
| 25 September 2023 | Connecting Astronomical Data Archives with Galaxy | Enabling astronomers to search and download data from IVOA-compliant archives directly within Galaxy |
| 15 September 2023 | Interactive tool collection is growing | New and improved interactive tools are available |
| 11 September 2023 | We are striking! | usegalaxy.eu closes job-queue on September 15th to support climate strike |
| 14 August 2023 | ChatGPT in Galaxy via Jupyter notebooks | Use ChatGPT in Galaxy Europe via JupyterLab interactive tool. |
| 11 August 2023 | Survival analysis for right censored data using lifelines | Kaplan-Meier and Cox proportional hazards models are available for testing in Galaxy |
| 7 August 2023 | Generic scatter plots for any Galaxy tabular data | A tool generating interactive HTML scatter plots from Galaxy tabular data is now available for testing |
| 24 July 2023 | Freiburg Galaxy team at the EGI 2023 | From June 19th to 23rd, members from the Freiburg Galaxy team traveled to Poznań, Poland to participate and present the EuroScienceGateway (ESG) project at the EGI2023 meeting |
| 20 July 2023 | | |
| 11 July 2023 | Carbon Emissions Reporting in Galaxy | Dynamic carbon emissions reporting for jobs in Galaxy |
| 7 July 2023 | Platform for Advanced Scientific Computing Conference 2023 | Several Galaxy Community members gathered in Davos |
| 30 June 2023 | Galaxy Single-cell Updates | Latest updates on Galaxy tools, workflows and training materials developed by the Galaxy single-cell community |
| 28 June 2023 | Upscaling file uploads with rustus | Migrating the server software behind our file upload system |
| 27 June 2023 | | |
| 23 June 2023 | GPU-enabled deep learning on Galaxy | Taking advantage of Galaxy's GPU computing nodes |
| 21 June 2023 | | |
| 16 June 2023 | Freiburg Galaxy team at the ELIXIR All Hands Meeting 2023 | From June 5th to 8th, several members from the Freiburg Galaxy team travelled to Dublin, Ireland to participant and present their work at the ELIXIR All Hands Meeting 2023 |
| 16 June 2023 | Galaxy for Astronomy: Integration of the FITS file format | Enabling native support and visualization of Astronomical FITS data in Galaxy |
| 16 June 2023 | Coordination meeting of EOSC-related projects funded under Horizon Europe | Members of the EuroScienceGateway project attended the EOSC Coordination meeting in Brussels |
| 7 June 2023 | | |
| 6 June 2023 | EU Maintenance Announcement 12th June | EU database maintenance, 8hrs downtime estimated |
| 6 June 2023 | New Paper "An accessible infrastructure for artificial intelligence using a Docker-based JupyterLab in Galaxy" | |
| 3 June 2023 | OSA2Micro – An Open Science Approach for Microbiology data integration | |
| 1 June 2023 | | |
| 22 May 2023 | Stronger together: first FAIR-EASE and EuroScienceGateway workshop | Presenting some outcomes from the first joined FAIR-EASE / EuroScienceGateway workshop |
| 21 May 2023 | New Paper "A panel of blood-derived miRNAs with a stable expression pattern as a potential pan-cancer detection signature" | Sabbaghian and colleagues have used the European Galaxy server to study miRNAs as biomarkers for cancer |
| 17 May 2023 | New Galaxy training: Genome-wide alternative splicing analysis | GTN hosts a new training for analyzing alternative splicing at genome-wide scale |
| 11 May 2023 | | |
| 8 May 2023 | Replacing the Job Router with Zero Downtime on EU | Mothballing the Sorting Hat – how we migrated our dynamic job routing |
| 6 May 2023 | Galaxy taking part @ Applied Bioinformatics & Public Health Microbiology 2023 | From the 3rd to the 5th of May, Engy Nasr from the Freiburg Galaxy team travelled to Hinxton, England to join and present her work at the Applied Bioinformatics & Public Health Microbiology 2023 conference |
| 5 May 2023 | Joining forces in EOSC: OpenAIRE and EuroScienceGateway sign Memorandum of Understanding | EuroScienceGateway and OpenAIRE team up to enhance accessibility and FAIRness of scientific data from the Galaxy project. |
| 21 April 2023 | You understand the data? Call for action! | Civil disobedience by climate activists is neither futile nor a criminal act statement of scientists says |
| 20 April 2023 | | |
| 19 April 2023 | | |
| 19 April 2023 | | |
| 19 April 2023 | | |
| 13 April 2023 | | |
| 31 March 2023 | Using Galaxy & TIaaS to teach hands-on genome assembly and annotation | On Feb. 27 to Mar. 3, we (several VGP-associated instructors) used the UseGalaxy EU infrastructure to aid in teaching an online Physalia course of 40+ students how to assemble and annotate their own genome from their browser. |
| 21 March 2023 | Evaluation of the current usage and future needs of Galaxy for microbial data analysis - We Need Your Help! | The microGalaxy community of practice would like to learn more about use-cases where Galaxy was beneficial, and also the barriers that prevent researchers from using Galaxy. The aim is to collectively find solutions to improve user experience and reduce barriers. To this end, we are launching a survey to reach out to, and learn from, the microbial research community. |
| 21 March 2023 | | |
| 16 March 2023 | New Paper "Return of the Tbx5; lineage-tracing reveals ventricular cardiomyocyte-like precursors in the injured adult mammalian heart" | Siatra et al. have used the European Galaxy server to identify cell populations capable of cardiac regeneration that we will be able to trace and monitor |
| 15 March 2023 | Effortlessly navigate your Galaxy history with enhanced search options | Data searchability in the Galaxy History panel has been taken to new levels with the advanced search options that allow users to not only find items with more ease, but also find relations within items in their history. |
| 14 March 2023 | Enjoy a much faster user interface | Following up on our modernization efforts, we now introduce a single top-router written in Vue, which brings all our Vue components together in a seamless user experience, dramatically reducing the number of required page reloads when navigating the Galaxy user interface. |
| 8 March 2023 | Galaxy Mentor Network: Reset | We launched the [Galaxy Mentor Network](https://galaxy-mentor-network.netlify.app/) one year ago with the idea to onboard new members in the community. Now, one year later, we realize that we failed. We still believe in the power that the Galaxy Mentor Network, and, in that spirit, we would like to relaunch the Galaxy Mentor Network with a new matching process. |
| 5 March 2023 | New Paper "Comparative phylogenomic insights of KCS and ELO gene families in Brassica species indicate their role in seed development and stress responsiveness" | Khan et al. present a comparative genome-wide analysis and mode of evolution of Ketoacyl-CoA synthase (KCS) and Elongation Defective Elongase (ELO) gene families |
| 28 February 2023 | New Paper "Intrasexual cuticular hydrocarbon dimorphism in a wasp sheds light on hydrocarbon biosynthesis genes in Hymenoptera" | Moris et al. have used the European Galaxy server to exploit the intrasexual CHC dimorphism in a mason wasp, Odynerus spinipes |
| 27 February 2023 | We are striking! | usegalaxy.eu closes job-queue on March 3 to support climate strike |
| 24 February 2023 | New Paper "The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond" | Bray *et al.* outline the implementation and broad range of functionality of Planemo, a software development kit for designing, testing, and executing Galaxy tools, workflows, and training materials. |
| 23 February 2023 | Exporting structured data like RO-Crate or BioComputeObjects | Galaxy has a very powerful and extensible exporting framework that now can export RO-Crate and BioComputeObjects |
| 20 February 2023 | | TIaaS allows trainees’ jobs to be run preferentially and avoids long execution times, depending on the server load. By providing access to this service, the Galaxy Training Network ensured that TIaaS would be freely available to anyone and facilitated access to an extensive catalogue of FAIR training materials. |
| 20 February 2023 | New Paper "Genome-wide deposition of 6-methyladenine in human DNA reduces the viability of HEK293 cells and directly influences gene expression" | Broche and colleagues have used the European Galaxy server to analyse the role of m6dA in human DNA |
| 9 February 2023 | New Paper "Whole genome sequence analysis of the first reported isolate of Salmonella Agona carrying blaCTX-M-55 gene in Brazil" | Bertani et al. have used the European Galaxy server to analyse the whole genome sequence of Salmonella Agona carrying blaCTX-M-55 gene |
| 8 February 2023 | | |
| 7 February 2023 | | Two Horizon Europe projects directed toward the development and deployment of the European Open Science Cloud (EOSC)—FAIR-EASE and EuroScienceGateway (ESG)—have agreed to closely cooperate over the next three years. |
| 5 February 2023 | How tools are created and maintained in Galaxy | A short summary about Galaxy tools development, maintenance and deployment. |
| 4 February 2023 | VirHunter: detection of novel RNA Viruses in Plant Sequencing Data | A Deep Learning-Based Method for the detection of novel RNA Viruses in Plant Sequencing Data |
| 2 February 2023 | | |
| 26 January 2023 | | |
| 24 January 2023 | Simple and data privacy-aware publishing of genomic variance data from Galaxy to the Beacon project | Galaxy has gained a Beacon integration that enables users to publish genetic variance data conveniently via Beacon project |
| 24 January 2023 | | |
| 24 January 2023 | GPU-enabled JupyterLab enables interactive AI use-cases in Galaxy | Democratising GPU infrastructures by providing accelerated JuypterLab instances via Galaxy and combining them with HPC workflows |
| 23 January 2023 | | |
| 20 January 2023 | Accessibility in Galaxy 23.0 and beyond | Accessibility improvement Highlights for the upcoming 23.0 release, and a few words on accessibility in general |
| 19 January 2023 | Building a distributed compute network across Europe | The Work Package 3 of the EuroScienceGateway project |
| 12 January 2023 | Stimulate FAIR and reusable research with computational workflows | The Work Package 2 of the EuroScienceGateway project |
| 12 January 2023 | The Climate community within the EuroScienceGateway project | Climate Community Strategy for Work Package 5 |
| 9 January 2023 | The Materials Science community within the EuroScienceGateway project | One of the most recent adopters of the Galaxy platfrom |
| 4 January 2023 | New Paper "Multimodal epigenetic changes and altered NEUROD1 chromatin binding in the mouse hippocampus underlie FOXG1 syndrome" | Akol *et al.* analyzed mouse FOXG1 functions on the chromatin level, having processed the multiomics data set on the European Galaxy server. |
| 3 January 2023 | New Paper "STAT3 signaling induced by the IL-6 family of cytokines modulates angiogenesis" | Rapp *et al.* investigated on IL-6 cytokines effects on angiogenesis invoking STAT3 signaling pathway, relying on the European Galaxy server |
| 3 January 2023 | Galaxy is part of NFDI4Bioimage | |
| 20 December 2022 | New Paper "A panel of blood-derived miRNAs with a stable expression pattern as a potential pan-cancer detection signature" | Sabbaghian et al. used the European Galaxy server to identify the roles of miRNAs in cancer |
| 12 December 2022 | The Astronomy community and the EuroScienceGateway project | Towards harmonizing Open Data Practices in Astronomy with EuroScienceGateway community |
| 8 December 2022 | The Biodiversity community and the EuroScienceGateway project | One of the early adopters to embrace Open Science best practices |
| 8 December 2022 | Building blocks for a sustainable operating model of the EuroScienceGateway | Work Package 4 of the EuroScienceGateway project |
| 30 November 2022 | Slow Storage on EU | Storage bottleneck on usegalaxy.eu results in slow queueing times |
| 29 November 2022 | | |
| 24 November 2022 | Use-cases from early adopters to embrace Open Science best practices | Work Package 5 of the EuroScienceGateway project |
| 24 November 2022 | Introduction to the EuroScienceGateway project administration and project management | Work Package 1 of the EuroScienceGateway project |
| 21 November 2022 | Task-based history export tracking | New pull request from David López merged: Add task-based history export tracking |
| 18 November 2022 | | |
| 14 November 2022 | BGE - Kickoff meeting | The BGE project kick-off meeting was celebrated between November 14th and November 18th in Leiden. |
| 12 November 2022 | Amazing Twitter Post on Cake-based explanation of single cell RNA sequencing | Combining baking and research |
| 6 November 2022 | EuroScienceGateway - Kickoff meeting | The EuroScienceGateway project started officially with a 2 days kickoff meeting with all 17 partners |
| 5 November 2022 | The start of the EuroScienceGateway - an EOSC project | EuroScienceGateway will deliver a robust, scalable, seamlessly integrated open infrastructure for data-driven research |
| 4 November 2022 | | Are you passionate about training in life sciences? The Freiburg Galaxy Team is looking for a team member who will develop, coordinate and implement training programs within international communities, especially via BioNT, a new multi-organization project funded by the European Commission, and via the Galaxy Training Network (GTN). |
| 1 November 2022 | Impact on Galaxy of OpenSSL 3.0.x Vulnerabilities CVE-2022-3602 and CVE-2022-3786 ("Spooky SSL") | Official severity downgraded to HIGH, exploitability and impact to Galaxy is very low |
| 30 October 2022 | New Paper "Semi-automated assembly of high-quality diploid human reference genomes" | Jarvis et al. determined which combination of current genome sequencing and assembly approaches yield the most complete and accurate diploid genome assembly with minimal manual curation |
| 23 October 2022 | UseGalaxy.eu Tool Updates for 2022-10-23 | |
| 19 October 2022 | Research Data Management in Galaxy | How Galaxy manages your (meta)data |
| 17 October 2022 | Galaxy as a cross-EOSC platform | New scientific collaboration agreement between EOSC-Life and EOSC-Pillar |
| 16 October 2022 | UseGalaxy.eu Tool Updates for 2022-10-16 | |
| 14 October 2022 | Well-being and Mental Health Guideline | Publication of the Guideline |
| 12 October 2022 | Outcomes of the European Galaxy Days | The European Galaxy Community gathered in Freiburg to discuss recent and future Galaxy developments |
| 9 October 2022 | UseGalaxy.eu Tool Updates for 2022-10-09 | |
| 3 October 2022 | UseGalaxy.eu Tool Updates for 2022-10-03 | |
| 2 October 2022 | UseGalaxy.eu Tool Updates for 2022-10-02 | |
| 30 September 2022 | EOSC4Cancer Kick-off Meeting" | EOSC4Cancer has been launched |
| 28 September 2022 | Introducing the Galaxy Global Hub | Find all your Galaxy info in one website |
| 25 September 2022 | UseGalaxy.eu Tool Updates for 2022-09-25 | |
| 18 September 2022 | UseGalaxy.eu Tool Updates for 2022-09-18 | On 2022-09-18, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 11 September 2022 | UseGalaxy.eu Tool Updates for 2022-09-11 | On 2022-09-11, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 11 September 2022 | | |
| 4 September 2022 | UseGalaxy.eu Tool Updates for 2022-09-04 | On 2022-09-04, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 28 August 2022 | UseGalaxy.eu Tool Updates for 2022-08-28 | On 2022-08-28, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 21 August 2022 | UseGalaxy.eu Tool Updates for 2022-08-21 | On 2022-08-21, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 16 August 2022 | UseGalaxy.eu Tool Updates for 2022-08-16 | On 2022-08-16, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 15 August 2022 | UseGalaxy.eu Tool Updates for 2022-08-15 | On 2022-08-15, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 10 August 2022 | The European Galaxy Team is hiring! | The Freiburg Galaxy Team is looking for a Systems Engineer/DevOps Engineer! |
| 7 August 2022 | UseGalaxy.eu Tool Updates for 2022-08-07 | On 2022-08-07, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 5 August 2022 | OpenAPI support in Galaxy and Interactive API Documentation | Since Galaxy release 22.05 it's much easier to discover, explore, learn and experiment with the Galaxy Rest API. |
| 31 July 2022 | UseGalaxy.eu Tool Updates for 2022-07-31 | On 2022-07-31, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 24 July 2022 | UseGalaxy.eu Tool Updates for 2022-07-24 | On 2022-07-24, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 19 July 2022 | UseGalaxy.eu Tool Updates for 2022-07-19 | On 2022-07-19, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 18 July 2022 | UseGalaxy.eu Tool Updates for 2022-07-18 | On 2022-07-18, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 10 July 2022 | UseGalaxy.eu Tool Updates for 2022-07-10 | On 2022-07-10, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 6 July 2022 | New Paper "Creating a good learning and sharing environment for bioinformatics" | Tomas Klingström and J.I. Ohlsson have published a paper about the use of BioContainers, Galaxy, and the GTN for bioinformatics researchers. |
| 3 July 2022 | UseGalaxy.eu Tool Updates for 2022-07-03 | On 2022-07-03, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 27 June 2022 | UseGalaxy.eu Tool Updates for 2022-06-27 | On 2022-06-27, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 27 June 2022 | GCC2022: Registration open for Webinar mode | For those that won't attend in person, the GCC Organizing Committee is happy to announce a virtual webinar-like option |
| 23 June 2022 | Usegalaxy.eu has reached 50,000 registered users | Big thanks to everybody that has contributed to the success of UseGalaxy.eu and to each of the 50K users for using Galaxy! Next stop: 100K! |
| 23 June 2022 | | One aim of the BY-COVID project is to build a framework enabling data from newly emerging infectious disease threats to be made rapidly and widely accessible. |
| 21 June 2022 | Galaxy taking part @ Elixir All Hands 2022 | During 6-9th of June, members of the European Galaxy team travelled to Amsterdam to join the ELIXIR All Hands meeting 2022 where we joined other colleagues from ELIXIR-DE. |
| 19 June 2022 | UseGalaxy.eu Tool Updates for 2022-06-19 | On 2022-06-19, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #332 |
| 12 June 2022 | UseGalaxy.eu Tool Updates for 2022-06-12 | |
| 5 June 2022 | UseGalaxy.eu Tool Updates for 2022-06-05 | |
| 2 June 2022 | | |
| 29 May 2022 | UseGalaxy.eu Tool Updates for 2022-05-29 | On 2022-05-29, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #329 |
| 27 May 2022 | New Paper "Transcriptome profiling of cisplatin resistance in triple-negative breast cancer: New insight into the role of PI3k/Akt pathway" | Amir Sabbaghian and colleagues have published a paper related to the resistance to cisplatin in the treatment of triple negative breast cancer. |
| 23 May 2022 | UseGalaxy.eu Tool Updates for 2022-05-23 | |
| 20 May 2022 | | |
| 15 May 2022 | UseGalaxy.eu Tool Updates for 2022-05-15 | |
| 8 May 2022 | UseGalaxy.eu Tool Updates for 2022-05-08 | |
| 1 May 2022 | UseGalaxy.eu Tool Updates for 2022-05-01 | |
| 28 April 2022 | Training Infrastructure Feedback from Hans-Rudolf Hotz and Lucille Delisle | After 2 years running the SIB "Galaxy Introduction for Life Scientists" course only online, we were super happy to stand in front of a crowd and meet again the students in person. |
| 24 April 2022 | UseGalaxy.eu Tool Updates for 2022-04-24 | On 2022-04-24, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #323 |
| 20 April 2022 | Towards a sustainable storage, enabling co-financing of public infrastructure | Research groups and networks can include their own storage into the European Galaxy server and decide about quota and data policies. |
| 17 April 2022 | UseGalaxy.eu Tool Updates for 2022-04-17 | |
| 12 April 2022 | | It has been a long discussed feature within the GTN Tutorial Author Community: how can we provide trainees with choice in their tutorials, and how can we as trainers not duplicate large tutorials just to show a slightly different path at one point?. |
| 11 April 2022 | Complete human genome T2T-CHM13v2.0 available in Galaxy | Something that the scientific community has been eagerly awaiting: the first complete, gap-free sequence for all 24 human chromosomes (including Y) |
| 10 April 2022 | UseGalaxy.eu Tool Updates for 2022-04-10 | |
| 3 April 2022 | UseGalaxy.eu Tool Updates for 2022-04-03 | |
| 28 March 2022 | UseGalaxy.eu Tool Updates for 2022-03-28 | |
| 23 March 2022 | Enough talking - time to act! | The next global climate strike will be on March 25! |
| 20 March 2022 | UseGalaxy.eu Tool Updates for 2022-03-20 | |
| 20 March 2022 | Genomic analysis on Galaxy using Azure CycleCloud | |
| 14 March 2022 | | We are proud to announce that, as result of the collaboration with the Vertebrate Genomes Project (VGP), a new training describing the VGP assembly pipeline is now available in the Galaxy Training Network |
| 14 March 2022 | UseGalaxy.eu Tool Updates for 2022-03-14 | |
| 13 March 2022 | Announcing the Workflows Community Initiative (WCI) | The Workflows Community Initiative has lunched the new website at workflows.community. The Freiburg Galaxy team is part of this Inititive to help improving computational workflows for everyone. |
| 13 March 2022 | Announcing the Workflows Community Initiative (WCI) | |
| 7 March 2022 | New Paper "Gut microbiota drives age-related oxidative stress and mitochondrial damage in microglia via the metabolite N6-carboxymethyllysine" | Our work led by Omar Mossad and Thomas Blank (Institute of Neuropathology, University of Freiburg) has been published last week in Nature Neuroscience |
| 7 March 2022 | New Paper "Distal and proximal cis-regulatory elements sense X chromosome dosage and developmental state at the Xist locus" | Congratulations Rutger Gjaltema and team for your latest findings about X chromosome regulations. |
| 6 March 2022 | UseGalaxy.eu Tool Updates for 2022-03-06 | |
| 5 March 2022 | New Paper "Impact of high platelet turnover on the platelet transcriptome: Results from platelet RNA-sequencing in patients with sepsis" | Thomas Nührenberg and team published a new paper in PLOS ONE about the "Impact of high platelet turnover on the platelet transcriptome". |
| 28 February 2022 | New Paper "Pluripotency factors determine gene expression repertoire at zygotic genome activation" | |
| 27 February 2022 | UseGalaxy.eu Tool Updates for 2022-02-27 | |
| 25 February 2022 | New Paper "Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework" | Matthias Fahrner from the University of Freiburg is defending his PhD today. |
| 25 February 2022 | Machine learning in Galaxy | Artificial intelligence (machine learning and deep learning) algorithms are being increasingly applied in several fields of Bioinformatics such as drug-response and protein structure prediction, imputing missing data in single-cell gene expression, modelling evolution in biological sequences and many more. |
| 24 February 2022 | AlphaFold now available in Galaxy | It seems the whole world is talking about AlphaFold, the AI system that predicts a protein’s 3D structure from its amino acid sequence that achieves accuracy comparable with real-life experiments. |
| 22 February 2022 | ELIXIR staff exchange between the German and Italian ELIXIR nodes | |
| 21 February 2022 | New Paper "The temperature-regulated DEAD-box RNA helicase CrhR interactome: autoregulation and photosynthesis-related transcripts" | Thanks Anzhela Migur and team for sharing your recent work about the temperature-regulated DEAD-box RNA helicase CrhR interactome. |
| 20 February 2022 | UseGalaxy.eu Tool Updates for 2022-02-20 | |
| 15 February 2022 | Protein target prediction of a bioactive ligand with Align-it and ePharmaLib | Bioactive compounds often bind to several target proteins, thereby exhibiting polypharmacology. |
| 14 February 2022 | UseGalaxy.eu Tool Updates for 2022-02-14 | |
| 13 February 2022 | UseGalaxy.eu Tool Updates for 2022-02-13 | |
| 6 February 2022 | UseGalaxy.eu Tool Updates for 2022-02-06 | |
| 1 February 2022 | IT security management of the University of Freiburg certified by TÜV SÜD | TÜV SÜD has awarded the University's data centre the international certification for information security management systems ISO/IEC 27001. |
| 1 February 2022 | IT security management of the University of Freiburg certified by TÜV SÜD | |
| 29 January 2022 | UseGalaxy.eu Tool Updates for 2022-01-29 | |
| 28 January 2022 | | Further building on the work in the automatic Jupyter Notebook, we’ve now re-written the Jupyter export to be faster, and more importantly added support for R and RMarkdown! |
| 23 January 2022 | UseGalaxy.eu Tool Updates for 2022-01-23 | |
| 20 January 2022 | Usegalaxy.eu surpassed 40.000 registered users | We are celebrating that usegalaxy.eu reached 40,000 registered users last November! Over the last year, the number of registered users has almost doubled, from 25,000 to more than 41,000 by January 2022. |
| 16 January 2022 | New Pre-Print "Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function" | Among the 30 non-synonymous nucleotide substitutions in the Omicron S-gene are 13 that have only rarely been seen in other SARS-CoV-2 sequences. |
| 14 January 2022 | UseGalaxy.eu Tool Updates for 2022-01-14 | |
| 17 December 2021 | UseGalaxy.eu Tool Updates for 2021-12-17 | |
| 16 December 2021 | Usegalaxy.eu project infrastructure and CVE-2021-44228 vulnerability | The Freiburg galaxy team reviewed the Usegalaxy.eu software stack, looking for the presence of vulnerable versions of the Log4j library. |
| 14 December 2021 | | A second Smörgåsbord with even more Galaxy Training |
| 14 December 2021 | | |
| 14 December 2021 | | The Galaxy Training Network will now support annotating Funding Agencies on training materials. |
| 8 December 2021 | Accessible and scalable detection and identification of foodborne pathogens, a project with Biolytix and funded by EOSC-Life | Thanks to funding from EOSC-Life, the Freiburg Galaxy team will work in 2022 with Biolytix, a Swiss Small and Medium-sized Enterprise (SME) specialized in molecular biology and microbiological analyses, toward Accessible and scalable detection and identification of foodborne pathogens. |
| 1 December 2021 | | Find out how contributing simple markdown tutorials can result in fantastically FAIR training. |
| 1 December 2021 | | We have just finished a new collection of training material for genome assembly and annotation! |
| 1 December 2021 | | |
| 29 November 2021 | Omicron and SARS-CoV-2 genome surveillance | A first view of the Omicron lineage’s mutational pattern derived transparently and fully reproducibly from raw sequencing reads |
| 27 November 2021 | UseGalaxy.eu Tool Updates for 2021-11-27 | |
| 25 November 2021 | An overview and statistics on the Galaxy Help Forum | From the GHelp supporting group, we thank you for the trust you place in us every day. |
| 25 November 2021 | | |
| 23 November 2021 | | Videos from online training events are now easier to find. |
| 23 November 2021 | | |
| 21 November 2021 | UseGalaxy.eu Tool Updates for 2021-11-21 | |
| 17 November 2021 | 4th de.NBI Cloud User meeting | The 4th de.NBI Cloud User meeting took place from 12th to 24th of November 2021. Many researchers from different bioinformatics research areas gathered to learn more about cloud computing and the de.NBI Cloud. |
| 15 November 2021 | Biohackathon Europe 2021 | Last week we had the BioHackathon Europe 2021 in Barcelona, as a hybrid event and with participants from all over the world. |
| 13 November 2021 | UseGalaxy.eu Tool Updates for 2021-11-13 | |
| 13 November 2021 | Training Infrastructure feedback: FORCeS eScience course | Tools in Climate Science: Linking Observations with Modelling |
| 10 November 2021 | | Access data from the GTN in a more accessible, API based way. |
| 10 November 2021 | | |
| 6 November 2021 | UseGalaxy.eu Tool Updates for 2021-11-06 | |
| 2 November 2021 | Galaxy Release 21.09 | Tool Panel Views, Collections, Reports, Remote Data, FastAPI, SQLAlchemy & much more! |
| 30 October 2021 | UseGalaxy.eu Tool Updates for 2021-10-30 | |
| 23 October 2021 | UseGalaxy.eu Tool Updates for 2021-10-23 | |
| 18 October 2021 | Training Infrastructure Feedback from Dr. Theodora Tsirka | We have received feedback about TIaaS from Dr. Theodora Tsirka, during the Training School on Microbiome Sequencing and Data Analysis |
| 16 October 2021 | UseGalaxy.eu Tool Updates for 2021-10-16 | |
| 13 October 2021 | BY-COVID: A new EU project for pandemic preparedness | A new €12 million Horizon Europe funded project which will tackle the data challenges that can hinder effective pandemic response. |
| 12 October 2021 | UseGalaxy.eu Use Case: cellular specification, differentiation and morphogenesis of the mucociliary epithelium | Sarah Bowden from the Innere Medizin IV (Nephrologie und Allgemeinmedizin) and ZBSA - Center for Biological Systems Analysis in Freiburg (Germany) has shared with us the main area of research of her project. |
| 12 October 2021 | | |
| 12 October 2021 | | As part of our work under the Gallantries Grant we are establishing a new topic within the GTN specifically focused on Data Science skills. |
| 11 October 2021 | UseGalaxy.eu Use Case: microRNAs in heart disease | Ileana Duran Fernandez from the School of Medicine of the Technical University of Munich works on heart disease. |
| 8 October 2021 | A proteomics sample metadata representation for multiomics integration and big data analysis | An extension and implementation of the MAGE-TAB format for proteomics (MAGE-TAB-Proteomics). |
| 6 October 2021 | New brochure from ELIXIR Germany | ELIXIR Germany has published the handout "ELIXIR GERMANY - Shaping the Bioinformatics Infrastructure for Life Sciences in Europe". |
| 5 October 2021 | UseGalaxy.eu FTP Server Update | On 2021-10-06, the FTP server accessible through the domain ftp.usegalaxy.eu will be upgraded with a new hardware and a new configuration. |
| 2 October 2021 | UseGalaxy.eu Tool Updates for 2021-10-02 | |
| 1 October 2021 | Teaching bioinformatics through blood, mucus and tears | Watch out for that My Little Pony baby stroller. |
| 29 September 2021 | | |
| 29 September 2021 | | |
| 26 September 2021 | UseGalaxy.eu Tool Updates for 2021-09-26 | |
| 24 September 2021 | | |
| 23 September 2021 | New Paper "Ready-to-use public infrastructure for global SARS-CoV-2 monitoring" | |
| 20 September 2021 | UseGalaxy.eu Tool Updates for 2021-09-20 | |
| 17 September 2021 | Enough talking - time to act! | |
| 15 September 2021 | UseGalaxy.eu as a cross-disciplinary platform for European researchers | |
| 11 September 2021 | UseGalaxy.eu Tool Updates for 2021-09-11 | |
| 10 September 2021 | Annual reports 2020: ELIXIR and IFB | The ELIXIR and IFB annual reports for 2020 are out, and they highlight Galaxy work throughout. |
| 4 September 2021 | UseGalaxy.eu Tool Updates for 2021-09-04 | |
| 3 September 2021 | UseGalaxy.eu Use Case: Marine turtle tumour disease | |
| 1 September 2021 | Win, Win, Win. When users support education programs to say thanks for free Galaxy resources | |
| 28 August 2021 | UseGalaxy.eu Tool Updates for 2021-08-28 | |
| 27 August 2021 | UseGalaxy.eu Use Case: Antibody responses following vaccination | |
| 24 August 2021 | Training Infrastructure as a Service (TIaaS) is sponsored by EOSC-Life | Anyone providing training is eligible to request the use of this service. |
| 24 August 2021 | Updates from the ELIXIR Galaxy Community | An updated ELIXIR Galaxy website includes our goals, with a special emphasis on interactions with the local, domain-specific and global communities; plus much more |
| 21 August 2021 | UseGalaxy.eu Tool Updates for 2021-08-21 | |
| 20 August 2021 | UseGalaxy.eu Use Case: Food safety research | |
| 14 August 2021 | UseGalaxy.eu Tool Updates for 2021-08-14 | |
| 13 August 2021 | UseGalaxy.eu Use Case: Sex determination of fish species | |
| 7 August 2021 | UseGalaxy.eu Tool Updates for 2021-08-07 | |
| 30 July 2021 | UseGalaxy.eu Use Case: Circadian research | |
| 28 July 2021 | | |
| 27 July 2021 | UseGalaxy.eu Tool Updates for 2021-07-27 | |
| 27 July 2021 | | |
| 25 July 2021 | UseGalaxy.eu Tool Updates for 2021-07-25 | |
| 23 July 2021 | UseGalaxy.eu Use Case: Heart research | |
| 21 July 2021 | Freiburg Galaxy Team at the Galaxy Community Conference 2021 | |
| 17 July 2021 | UseGalaxy.eu Tool Updates for 2021-07-17 | |
| 16 July 2021 | UseGalaxy.eu Use Case: Epigenomics and transcriptomics in cancer | |
| 13 July 2021 | Highlights from the Galaxy Community Conference 2021 | 399 participants from 55 countries |
| 10 July 2021 | UseGalaxy.eu Tool Updates for 2021-07-10 | |
| 9 July 2021 | UseGalaxy.eu Use Case: Plant genomics | |
| 5 July 2021 | UseGalaxy.eu Use Case: colorectal cancer research | |
| 4 July 2021 | ownCloud and Nextcloud integration for your private data | |
| 3 July 2021 | UseGalaxy.eu Tool Updates for 2021-07-03 | |
| 2 July 2021 | UseGalaxy.eu Use Case: Genomics, evolution, and ecology of organohalide-respiring bacteria | |
| 2 July 2021 | "Galaxy for microbiome via ASaiM story - From a local project to a global effort to support microbiome data analysis" - Talk at Holistic Bioinformatic Approaches used in Microbiome Research | |
| 1 July 2021 | Women in Data Science 2021 - Perspectives in Industry and Academia - Join Bayer AG and de.NBI / ELIXIR Germany event | |
| 30 June 2021 | | |
| 28 June 2021 | Open Life Science program & the Galaxy community: involvement in OLS-3 and invitation to apply to the next cohort | Open Life Science (OLS) is an online mentoring & training program |
| 26 June 2021 | | |
| 26 June 2021 | UseGalaxy.eu Tool Updates for 2021-06-26 | |
| 25 June 2021 | UseGalaxy.eu Use Case: Genetics research on dairy cattle | |
| 25 June 2021 | | |
| 21 June 2021 | UseGalaxy.eu Tool Updates for 2021-06-21 | |
| 19 June 2021 | UseGalaxy.eu Tool Updates for 2021-06-19 | |
| 18 June 2021 | UseGalaxy.eu Use Case: Zika virus effects on brain and brain tumours | |
| 12 June 2021 | UseGalaxy.eu Tool Updates for 2021-06-12 | |
| 11 June 2021 | | |
| 10 June 2021 | Training Infrastructure Feedback from Abdus Salam | |
| 9 June 2021 | A Galaxy of tools at your fingertips inside of Broad Institutes Terra | |
| 7 June 2021 | New Paper "Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine" | The Galaxy-ML platform provides all the tools necessary to define a learner, train it, evaluate it, and visualize its performance. |
| 5 June 2021 | UseGalaxy.eu Tool Updates for 2021-06-05 | |
| 4 June 2021 | | |
| 1 June 2021 | | |
| 29 May 2021 | UseGalaxy.eu Tool Updates for 2021-05-29 | |
| 29 May 2021 | New Paper "Tryptophan metabolism drives dynamic immunosuppressive myeloid states in IDH-mutant gliomas" | |
| 28 May 2021 | Webinars: Galaxy Resources for ... | Watch them now. |
| 25 May 2021 | New Paper "Robust and efficient single-cell Hi-C clustering with approximate k-nearest neighbor graphs" | |
| 25 May 2021 | | |
| 25 May 2021 | | |
| 20 May 2021 | | The first Spanish tutorial is live! Galaxy has always had google-translated tutorials, but we are now embarking on a project to assess the learning experience with human-translated, vs google-translated, bioinformatics tutorials. |
| 20 May 2021 | | |
| 19 May 2021 | UseGalaxy.eu Apollo Update | |
| 14 May 2021 | Two New Teaching Papers using Galaxy | Two hand-in-hand teaching papers have been published this week using Galaxy as a teaching platform. |
| 13 May 2021 | UseGalaxy.eu Tool Updates for 2021-05-13 | |
| 13 May 2021 | New Paper "Novel insights into the electrophysiology of murine cardiac macrophages: relevance of voltage-gated potassium channels" | |
| 11 May 2021 | COVID updates: B.1.617.2 detected in COG-UK data from the beginning of April | We checked the COG-UK data to see if we’d find representative samples of B.1.617.2 (one of the Indian lineages, and a Variant of Concern). |
| 11 May 2021 | UseGalaxy.eu Tool Updates for 2021-05-11 | |
| 4 May 2021 | GCC2021 Abstract and Fellowship Submission, and Early Registration Deadlines Extended | Talks & Fellowships due 17 May; Poster/Demos due 14 June |
| 4 May 2021 | May 2021 Galactic News | GCC2021 and James Taylor Video Deadlines Extended, plus a whole lot more. |
| 30 April 2021 | Outcomes of the workshop 'SARS-CoV-2 Data Analysis and Monitoring with Galaxy' | Building capacity, both in the analysis and data management sides of SARS-CoV-2 |
| 30 April 2021 | Plant Transcriptomics Workshop: A Summary | New platform, new learners, new paradigms. |
| 29 April 2021 | Monitoring of raw open data for SARS-CoV-2 genome surveillance | UseGalaxy.eu is now automatically collecting, and analyzing raw sequencing data published by the COVID-19 Genomics UK Consortium (COG-UK). |
| 26 April 2021 | UseGalaxy.eu Tool Updates for 2021-04-26 | |
| 25 April 2021 | 30,000 users | |
| 19 April 2021 | The Galaxy community involved in several ELIXIR Implementation Studies | |
| 17 April 2021 | UseGalaxy.eu Tool Updates for 2021-04-17 | |
| 15 April 2021 | | |
| 14 April 2021 | GCC2021 Conference Fellowships | Apply by May 17 |
| 14 April 2021 | GCC2021 Registration is Open | Please join us at Galaxy's annual community gathering |
| 14 April 2021 | GCC2021 Abstract Submission are Open | Abstracts are due May 17 |
| 14 April 2021 | UseGalaxy.eu Tool Updates for 2021-04-14 | |
| 12 April 2021 | April 2021 Galactic News | GCC2021 Abstracts and Registration are open, plus lots more. |
| 10 April 2021 | | |
| 10 April 2021 | UseGalaxy.eu Tool Updates for 2021-04-10 | |
| 8 April 2021 | Updates from the Single-Cell Community in Freiburg | |
| 6 April 2021 | | |
| 3 April 2021 | UseGalaxy.eu Tool Updates for 2021-04-03 | |
| 3 April 2021 | Training Infrastructure Feedback from Simon Gladman | |
| 30 March 2021 | | |
| 29 March 2021 | New Paper "The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies" | |
| 29 March 2021 | New Paper "CryptoGenotyper: A new bioinformatics tool for rapid Cryptosporidium identification" | |
| 28 March 2021 | Training Infrastructure Feedback from Dr. Fotis Psomopoulos | |
| 27 March 2021 | UseGalaxy.eu Tool Updates for 2021-03-27 | |
| 25 March 2021 | How to import a workflow from the Workflow Hub and run it on remote COVID-19 data | |
| 25 March 2021 | Training Infrastructure Feedback from Dr. Ricardo Gonzalo Sanz | |
| 25 March 2021 | Galaxy-ELIXIR webinars series: Advanced Features | |
| 24 March 2021 | | |
| 24 March 2021 | | |
| 22 March 2021 | Training Infrastructure Feedback from Martin Čech | |
| 20 March 2021 | UseGalaxy.eu Tool Updates for 2021-03-20 | |
| 19 March 2021 | Training Infrastructure Feedback from Dr. Tuan Leng Tay | |
| 19 March 2021 | | |
| 18 March 2021 | | |
| 18 March 2021 | | |
| 18 March 2021 | | |
| 17 March 2021 | March 2021 Galactic News | New Featured and Community News sections; new events, releases, training, and lots of videos |
| 17 March 2021 | | |
| 17 March 2021 | | |
| 16 March 2021 | 2021 Google Summer of Code | Galaxy is participating |
| 16 March 2021 | UseGalaxy.eu Tool Updates for 2021-03-16 | |
| 16 March 2021 | | |
| 16 March 2021 | | |
| 16 March 2021 | | |
| 13 March 2021 | RADseq data analysis (on mobile phone while baby is sleeping) | (on mobile phone while baby is sleeping) |
| 10 March 2021 | Successful use cases from EOSC-Life using Galaxy | The first round of EOSC-Life demonstrators has driven eight successful use cases, three of them using Galaxy. |
| 9 March 2021 | The European HealthyCloud consortium kick-off is today! | |
| 7 March 2021 | New Paper "ChiRA: an integrated framework for chimeric read analysis from RNA-RNA interactome and RNA structurome data" | |
| 6 March 2021 | European Galaxy Server part of CatRIS | |
| 1 March 2021 | | |
| 28 February 2021 | New introductory video to the Galaxy Training Network | |
| 27 February 2021 | UseGalaxy.eu Tool Updates for 2021-02-27 | |
| 25 February 2021 | Galaxy-ELIXIR webinar series: Open Data Infrastructures to tackle COVID-19 pandemic | |
| 22 February 2021 | Training Infrastructure Feedback from Mali Salmon-Divon | |
| 20 February 2021 | UseGalaxy.eu Tool Updates for 2021-02-20 | |
| 20 February 2021 | Login via ELIXIR-AAI, Google, LinkedIn, or your ORCID iD | |
| 18 February 2021 | New Paper "Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities" | |
| 18 February 2021 | Meet & Join the Galaxy Community | |
| 17 February 2021 | | Chceme od tebe slyšet! |
| 15 February 2021 | Using secure BioContainers to run Galaxy tools | |
| 14 February 2021 | Massive open online education party: GTN Smörgåsbord | Starting Monday the 15th of February, the Galaxy Training Network (GTN) is running a global Galaxy online course |
| 13 February 2021 | UseGalaxy.eu Tool Updates for 2021-02-13 | |
| 8 February 2021 | February 2021 Galactic News | Events, platform news, blog posts, videos, pubs, jobs and releases |
| 8 February 2021 | | |
| 6 February 2021 | Galaxy Metabolomics Mini-Symposium report | next meetings are planned for March 11, May 6 and at the Galaxy Community Conference in July. |
| 6 February 2021 | UseGalaxy.eu Tool Updates for 2021-02-06 | |
| 5 February 2021 | New hardware: More RAM | |
| 5 February 2021 | The European Galaxy server listed as an official resource on the COVID-19 Data Portal | |
| 4 February 2021 | 2021 Galaxy Community Conference will be virtual, global, and affordable | And globally accessible |
| 4 February 2021 | | |
| 1 February 2021 | Three articles related to COVID-19 research using Galaxy in the de.NBI brochure | Just part of how de.NBI is supporting COVID-19 research |
| 30 January 2021 | UseGalaxy.eu Tool Updates for 2021-01-30 | |
| 30 January 2021 | New and updated CNV and Variant Calling tools | on UseGalaxy.eu and in the Toolshed |
| 30 January 2021 | ISMB 2020 conference videos available on YouTube | |
| 28 January 2021 | Training Infrastructure Feedback from Lachlan Gray | |
| 26 January 2021 | UseGalaxy.eu Tool Updates for 2021-01-26 | |
| 22 January 2021 | Variant Analysis of SARS-CoV-2 Sequencing Data (Jan 2021 update) | January 2021 update |
| 18 January 2021 | Nora, the new visualisation in Galaxy | A new framework for medical imaging research |
| 18 January 2021 | UseGalaxy.fr is hiring | |
| 18 January 2021 | Major update to SearchGUI and PeptideShaker | |
| 15 January 2021 | New Galaxy Community Organization: Working Groups | |
| 12 January 2021 | Nominate a training for the 2021 Galaxy Community Conference (GCC2021) | |
| 11 January 2021 | New Paper "Tool recommender system in Galaxy using deep learning" | by Anup Kumar, Helena Rasche, Björn Grüning, Rolf Backofen in GigaScience |
| 7 January 2021 | January 2021 Galactic News | Events, platform news, blog posts, videos, pubs, jobs and releases |
| 4 January 2021 | GTN Plant-related trainings | |
| 2 January 2021 | UseGalaxy.eu Tool Updates for 2021-01-02 | |
| 31 December 2020 | The European Galaxy Server in 2020 | What a shitty year! But it’s over and we hope you and your family are safe and healthy. |
| 28 December 2020 | European Galaxy Flavours | |
| 26 December 2020 | UseGalaxy.eu Tool Updates for 2020-12-26 | |
| 24 December 2020 | UseGalaxy.eu Tool Updates for 2020-12-24 | |
| 22 December 2020 | Open Life Science program & the Galaxy community: involvement in OLS-2 and invitation to apply to the next cohort | involvement in OLS-2 and invitation to apply to the next cohort |
| 16 December 2020 | New Paper "Galaxy CLIP-Explorer: a web server for CLIP-Seq data analysis" | |
| 15 December 2020 | New Paper "Proximity to injury, but neither number of nuclei nor ploidy define pathological adaptation and plasticity in cardiomyocytes" | |
| 8 December 2020 | December 2020 Galactic News | And what a month it is |
| 8 December 2020 | Training Infrastructure Feedback on the ELIXIR Belgium workshop “DDA and DIA proteomic analysis in Galaxy” | |
| 3 December 2020 | UseGalaxy.eu update to 20.09 | |
| 28 November 2020 | UseGalaxy.eu Tool Updates for 2020-11-28 | |
| 27 November 2020 | Training Infrastructure Feedback from Ambre Jousselin | |
| 27 November 2020 | | |
| 24 November 2020 | Activity report of the last 5 years of the Freiburg Galaxy Team | Crucial infrastructure serving more than 22,000 researchers |
| 23 November 2020 | Images stored in local OMERO instances are now available from Galaxy | An important step towards the accessibility of bioimage data |
| 22 November 2020 | New Paper "Decitabine induces gene derepression on monosomic chromosomes: in vitro and in vivo effects in adverse-risk cytogenetics AML" | |
| 21 November 2020 | UseGalaxy.eu Tool Updates for 2020-11-21 | |
| 21 November 2020 | New Paper "Diabetes changes gene expression but not DNA methylation in cardiac cells" | |
| 20 November 2020 | Simplified submission of SARS-CoV-2 data to open databases | |
| 19 November 2020 | Open Source Software Strategy approved by the European Commission | |
| 18 November 2020 | The NFDI-DataPLANT consortium has already kick-off! | |
| 17 November 2020 | New hardware: More storage and GPUs | de.NBI-Cloud has extended the support to the European Galaxy Server |
| 16 November 2020 | Biohackathon Europe 2020 | The Galaxy community has participated in several projects |
| 14 November 2020 | UseGalaxy.eu Tool Updates for 2020-11-14 | |
| 7 November 2020 | UseGalaxy.eu Tool Updates for 2020-11-07 | |
| 3 November 2020 | November 2020 Galactic News | JXTX Foundation, Events, Platforms, Jobs, Pubs, ... |
| 31 October 2020 | UseGalaxy.eu Tool Updates for 2020-10-31 | |
| 29 October 2020 | The first Paper Cuts Community Fest was a success! | So we will do this again in November! |
| 24 October 2020 | UseGalaxy.eu Tool Updates for 2020-10-24 | |
| 23 October 2020 | New Paper "NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy" | New paper in GigaScience |
| 23 October 2020 | New Paper "A single-cell RNA-sequencing training and analysis suite using the Galaxy framework" | |
| 22 October 2020 | The EOSC-Life newsletter is out! | Galaxy training, CellProfiler, and more |
| 22 October 2020 | More than 8000 packages/containers in Bioconda/BioContainers from more than 1000 contributors | from 1000+ contributors |
| 21 October 2020 | 20,000 users | |
| 17 October 2020 | UseGalaxy.eu Tool Updates for 2020-10-17 | |
| 14 October 2020 | Training Infrastructure Feedback from Leighton Pritchard | Addressing challenges the global coronavirus pandemic |
| 10 October 2020 | UseGalaxy.eu Tool Updates for 2020-10-10 | |
| 8 October 2020 | The Community Against COVID-19 | |
| 7 October 2020 | October 2020 Galactic News | Events & JTech, platforms, blog posts, tutorials, pubs, releases, ... |
| 3 October 2020 | UseGalaxy.eu Tool Updates for 2020-10-03 | |
| 26 September 2020 | UseGalaxy.eu Tool Updates for 2020-09-26 | |
| 23 September 2020 | EOSC-Life Open Calls | Two funding opportunities are now open in EOSC-Life. |
| 15 September 2020 | Remote training using Galaxy | Lessons learned from our ELIXIR Galaxy Machine Learning Workshop |
| 12 September 2020 | UseGalaxy.eu Tool Updates for 2020-09-12 | |
| 11 September 2020 | Enough talking - time to act! | |
| 10 September 2020 | The ELIXIR tools platform for COVID-19 research at the ECCB2020 | |
| 8 September 2020 | EOSC-Life has awarded two training projects to the European Galaxy team | From 1st EOSC-Life Training Open Call |
| 7 September 2020 | Freiburg Galaxy team is participating to the 2nd cohort of the Open Life Science program | |
| 6 September 2020 | Galaxy Europe Branding Material | |
| 5 September 2020 | UseGalaxy.eu Tool Updates for 2020-09-05 | |
| 2 September 2020 | New Paper "No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics" | |
| 1 September 2020 | September 2020 Galactic News | BCC2020 & GCC2021, events, platforms, blog posts, tutorials, pubs, releases, obs ... |
| 1 September 2020 | New Paper "pyGenomeTracks: reproducible plots for multivariate genomic data sets" | |
| 31 August 2020 | New Paper "Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera" | |
| 30 August 2020 | New Paper "An epigenetic map of malaria parasite development from host to vector" | |
| 29 August 2020 | UseGalaxy.eu Tool Updates for 2020-08-29 | |
| 22 August 2020 | Galaxy will join the NFDI-DataPLANT consortium in October 2020 | UseGalaxy.eu and DataPLANT consortium to record and deliver large data volumes for modern crop research |
| 22 August 2020 | UseGalaxy.eu Tool Updates for 2020-08-22 | |
| 22 August 2020 | 3 steps to get your tool into Galaxy - A real-world example | A real-world example |
| 15 August 2020 | UseGalaxy.eu Tool Updates for 2020-08-15 | |
| 8 August 2020 | UseGalaxy.eu Tool Updates for 2020-08-08 | |
| 1 August 2020 | UseGalaxy.eu Tool Updates for 2020-08-01 | |
| 30 July 2020 | Galaxy Africa Community Update | |
| 29 July 2020 | UseGalaxy.eu update to 20.05 | |
| 27 July 2020 | Climate Science at BCC2020 | July has been a very busy month for Galaxy Climate |
| 25 July 2020 | UseGalaxy.eu Tool Updates for 2020-07-25 | |
| 25 July 2020 | Training Infrastructure Feedback from Rodrigo Ortega Polo | |
| 23 July 2020 | Computational chemistry at BCC2020 | |
| 22 July 2020 | UseGalaxy.eu Tool Updates for 2020-07-22 | |
| 19 July 2020 | The landscape of SARS-CoV-2 RNA modifications | Studying the RNA modifications of SARS-CoV-2 to improve understanding of SARS viruses |
| 18 July 2020 | UseGalaxy.eu Tool Updates for 2020-07-18 | |
| 13 July 2020 | UseGalaxy.eu Tool Updates for 2020-07-13 | |
| 3 July 2020 | Processing of Single Cell RNA-Seq Data with Galaxy | |
| 3 July 2020 | Intuitive, reproducible high-throughput molecular dynamics in Galaxy: a tutorial | |
| 1 July 2020 | July 2020 Galactic News | BCC2020, SRA, Events, Platforms, Training, Jobs, ... |
| 1 July 2020 | CellProfiler now available in Galaxy | |
| 20 June 2020 | UseGalaxy.eu Tool Updates for 2020-06-20 | |
| 16 June 2020 | UseGalaxy.eu Tool Updates for 2020-06-16 | |
| 13 June 2020 | UseGalaxy.eu Tool Updates for 2020-06-13 | |
| 11 June 2020 | June 2020 Galactic News | James Taylor Foundation, BCC2020, Galaxy+SRA, Events, Platforms, ... |
| 8 June 2020 | Training Infrastructure Feedback from Marcel Schulz | |
| 6 June 2020 | UseGalaxy.eu Tool Updates for 2020-06-06 | |
| 3 June 2020 | The ChemicalToolbox: reproducible, user-friendly cheminformatics analysis on the Galaxy platform | cheminformatics.usegalaxy.eu |
| 30 May 2020 | UseGalaxy.eu Tool Updates for 2020-05-30 | |
| 24 May 2020 | UseGalaxy.eu Tool Updates for 2020-05-24 | |
| 15 May 2020 | UseGalaxy.eu Tool Updates for 2020-05-15 | |
| 4 May 2020 | May 2020 Galactic News | James Taylor, BCC2020, COVID-19 Response, and more |
| 2 May 2020 | UseGalaxy.eu Tool Updates for 2020-05-02 | |
| 25 April 2020 | UseGalaxy.eu Tool Updates for 2020-04-25 | |
| 23 April 2020 | Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration | a visualization plug-in that extends Galaxy-P’s advantages into the visualization of large, complex datasets |
| 18 April 2020 | UseGalaxy.eu Tool Updates for 2020-04-18 | |
| 14 April 2020 | Integrative meta-omics analysis | Metagenomics, Metatranscriptomics, Metaproteomics |
| 11 April 2020 | UseGalaxy.eu Tool Updates for 2020-04-11 | |
| 4 April 2020 | UseGalaxy.eu Tool Updates for 2020-04-04 | |
| 3 April 2020 | James Taylor | 1979 - 2020 |
| 2 April 2020 | Workshop on Workflow Management Systems | |
| 28 March 2020 | UseGalaxy.eu Tool Updates for 2020-03-28 | |
| 24 March 2020 | ChiRA tool suite - an integrated framework for Chimeric Read Analysis from RNA-RNA interactome data | an integrated framework for Chimeric Read Analysis from RNA-RNA interactome data |
| 24 March 2020 | | |
| 21 March 2020 | UseGalaxy.eu Tool Updates for 2020-03-21 | |
| 19 March 2020 | WirVsVirus Hackathon | March 20-22 |
| 14 March 2020 | UseGalaxy.eu Tool Updates for 2020-03-14 | |
| 11 March 2020 | Virtual screening against SARS-CoV-2 main protease | workflows for identifying potential ligands by virtual screening |
| 10 March 2020 | UseGalaxy.eu Tool Updates for 2020-03-10 | |
| 9 March 2020 | Storage issues and potential data loss | |
| 7 March 2020 | UseGalaxy.eu Tool Updates for 2020-03-07 | |
| 6 March 2020 | de.NBI Training Infrastructure Feedback from Helena Rasche | and was wildly successful |
| 1 March 2020 | ELIXIR-Italy launches Laniakea@ReCaS, a Galaxy “on-demand” platform | |
| 29 February 2020 | UseGalaxy.eu Tool Updates for 2020-02-29 | |
| 28 February 2020 | | |
| 28 February 2020 | | |
| 27 February 2020 | TIaaS Calendar and Stats site | Training Infrastructure as a Service |
| 26 February 2020 | | |
| 25 February 2020 | | |
| 21 February 2020 | UseGalaxy.eu Tool Updates for 2020-02-21 | |
| 19 February 2020 | | |
| 17 February 2020 | UseGalaxy.eu Tool Updates for 2020-02-17 | |
| 12 February 2020 | 12,000 users - 6,900,000 jobs - 13,300,000 datasets | |
| 11 February 2020 | | Towards a European network of Galaxy resources |
| 11 February 2020 | New Paper "Gene expression in immortalized versus primary isolated cardiac endothelial cells" | |
| 10 February 2020 | Training Infrastructure Feedback from Beata Scholtz | |
| 8 February 2020 | UseGalaxy.eu Tool Updates for 2020-02-08 | |
| 8 February 2020 | CORBEL staff visit program: Integration IDR - Galaxy | |
| 7 February 2020 | Galaxy provides support as an NFDI | |
| 6 February 2020 | Accessible and reproducible mass spectrometry imaging data analysis in Galaxy | |
| 1 February 2020 | UseGalaxy.eu Tool Updates for 2020-02-01 | |
| 30 January 2020 | ELIXIR tools platform meeting and Container SIS meeting in Paris | |
| 25 January 2020 | UseGalaxy.eu Tool Updates for 2020-01-25 | |
| 22 January 2020 | Outreach - Invited Talk for Introducing Galaxy to Uniklinik Freiburg | |
| 20 January 2020 | Training Infrastructure Feedback from Denny Popp | |
| 18 January 2020 | UseGalaxy.eu Tool Updates for 2020-01-18 | |
| 16 January 2020 | Human multi-omics data from UK Personal Genome Project accessible through UseGalaxy.eu | |
| 11 January 2020 | UseGalaxy.eu Tool Updates for 2020-01-11 | |
| 8 January 2020 | January 2020 Galactic News | Events, Pubs, Blogs, Platforms, Tutorials, Doc, and Happy New Year too |
| 8 January 2020 | Galaxy Training Survey | We need your input on preparing and giving Galaxy Trainings |
| 8 January 2020 | New Paper "Survey of metaproteomics software tools for functional microbiome analysis" | |
| 7 January 2020 | Massively Multiplayer Online Science in Galaxy to help Ecologists - A Citizen Science Project | |
| 5 January 2020 | 118 new plant reference genomes and transcriptomes added to Galaxy Europe! | |
| 5 January 2020 | Laborjournal article about Galaxy | |
| 4 January 2020 | UseGalaxy.eu Tool Updates for 2020-01-04 | |
| 28 December 2019 | UseGalaxy.eu Tool Updates for 2019-12-28 | |
| 21 December 2019 | UseGalaxy.eu Tool Updates for 2019-12-21 | |
| 14 December 2019 | UseGalaxy.eu Tool Updates for 2019-12-14 | |
| 10 December 2019 | Training Infrastructure Feedback from the Gallantries Project | |
| 9 December 2019 | December 2019 Galactic News | Events, Pubs, Blogs, Platforms, Tutorials, Doc, Jobs, Releases, and Platypi too. |
| 7 December 2019 | UseGalaxy.eu Tool Updates for 2019-12-07 | |
| 3 December 2019 | Training Infrastructure Feedback from Ambre Jousselin | |
| 2 December 2019 | 10,000 users, 6,370,000 jobs and 11,900,000 datasets | A big thank you to all our users and people that have contributed to this project! |
| 1 December 2019 | Training Infrastructure Feedback from Giovanni Widmer | |
| 30 November 2019 | GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clustering | |
| 30 November 2019 | UseGalaxy.eu Tool Updates for 2019-11-30 | |
| 30 November 2019 | The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR | |
| 26 November 2019 | PIPE-T paper published | |
| 23 November 2019 | Enough talking - time to act! | |
| 22 November 2019 | UseGalaxy.eu Tool Updates for 2019-11-23 | |
| 20 November 2019 | gProfiler is published and running on usegalaxy.eu | A toolset for functional enrichment analysis and conversions of gene lists. |
| 15 November 2019 | UseGalaxy.eu Tool Updates for 2019-11-15 | |
| 12 November 2019 | November 2019 Galactic News | Events! Pubs! Platforms! Jobs! Releases! |
| 11 November 2019 | SINA available in Galaxy - Accurate high-throughput multiple sequence alignment of ribosomal RNA genes | |
| 10 November 2019 | UseGalaxy.eu Tool Updates for 2019-11-10 | |
| 8 November 2019 | UseGalaxy – a bioinformatic shopping mall from Sivakumar Prakash | |
| 7 November 2019 | RNA-Seq Training feedback from Simon Moxon | |
| 2 November 2019 | Training update from Tomas Klingström | Agricultural Sciences collaboration between Swedish University of Agricultural sciences researchers and the Agricultural Research Council in South Africa |
| 23 October 2019 | Use the power of pandas / numpy to transform tabular datasets in a myriad of ways with our new Table Compute tool | Drop or duplicate given rows or columns from a tabular dataset, filter rows or columns on their properties, replace or transform table elements, ... |
| 19 October 2019 | UseGalaxy.eu Tool Updates for 2019-10-19 | |
| 18 October 2019 | Parent instance error | |
| 17 October 2019 | UseGalaxy.eu Tool Updates for 2019-10-17 | |
| 15 October 2019 | Training Infrastructure Feedback from Charles Girardot | |
| 12 October 2019 | UseGalaxy.eu Tool Updates for 2019-10-12 | |
| 5 October 2019 | UseGalaxy.eu Tool Updates for 2019-10-05 | |
| 2 October 2019 | October 2019 Galactic News | Events! Pubs! Platforms! Jobs! Doc! Tutorials! And some other news too. |
| 2 October 2019 | UseGalaxy.eu Upgrading to 19.09 | |
| 30 September 2019 | Another successful Galaxy high-throughput data analysis workshop in Freiburg | |
| 29 September 2019 | UseGalaxy.eu Tool Updates for 2019-09-29 | |
| 21 September 2019 | UseGalaxy.eu Tool Updates for 2019-09-21 | |
| 19 September 2019 | We are striking! | |
| 17 September 2019 | 8,000 users, 6,000,000 jobs and 11,000,000 datasets | |
| 16 September 2019 | Scientists must act on our own warnings to humanity | |
| 15 September 2019 | The European Galaxy server is part of the EOSC marketplace | |
| 14 September 2019 | UseGalaxy.eu Tool Updates for 2019-09-14 | |
| 7 September 2019 | UseGalaxy.eu Tool Updates for 2019-09-07 | |
| 6 September 2019 | First ATACseq training material! | |
| 31 August 2019 | UseGalaxy.eu Tool Updates for 2019-08-31 | |
| 30 August 2019 | September 2019 Galactic News | Events! Pubs! Platforms! Jobs! Doc! Tutorials! Releases! And some other news too. |
| 28 August 2019 | TIaaS Queue Status Update | |
| 24 August 2019 | UseGalaxy.eu Tool Updates for 2019-08-24 | |
| 20 August 2019 | PathwayMatcher published and running on usegalaxy.eu | |
| 18 August 2019 | UseGalaxy.eu Tool Updates for 2019-08-18 | |
| 17 August 2019 | Slamdunk - SLAMseq analysis for nucleotide-conversion sequencing datasets | SLAMseq analysis for nucleotide-conversion sequencing datasets |
| 10 August 2019 | UseGalaxy.eu Tool Updates for 2019-08-10 | |
| 6 August 2019 | Galaxy Community Conference - a brief summary! | A brief summary |
| 5 August 2019 | The Galaxy Genome Annotation Project - Scaling Genome Annotation for the Masses | Scaling Genome Annotation for the Masses |
| 3 August 2019 | UseGalaxy.eu Tool Updates for 2019-08-03 | |
| 2 August 2019 | MaxQuant goes Galaxy | |
| 1 August 2019 | August 2019 Galactic News | GCC2019 is done; BCC2020 is coming |
| 27 July 2019 | UseGalaxy.eu Tool Updates for 2019-07-27 | |
| 22 July 2019 | The European Galaxy Team with talks at ISMB/ECCB | |
| 20 July 2019 | 7,000 users and 10,000,000 datasets | |
| 19 July 2019 | UseGalaxy.eu Tool Updates for 2019-07-19 | |
| 13 July 2019 | UseGalaxy.eu Tool Updates for 2019-07-13 | |
| 6 July 2019 | UseGalaxy.eu Tool Updates for 2019-07-06 | |
| 30 June 2019 | GCC2019 will be livestreamed | |
| 28 June 2019 | July 2019 Galactic News | GCC2019 is here! (And other new stuff too) |
| 27 June 2019 | Tool Recommendation: What do I do next? | usegalaxy.eu has implemented tool recommendation, finally answering the question "what to do next." |
| 27 June 2019 | UseGalaxy.eu Tool Updates for 2019-06-27 | |
| 21 June 2019 | UseGalaxy.eu Tool Updates for 2019-06-21 | usegalaxy.eu is getting ready for GCC 2019 |
| 17 June 2019 | TIaaS Queue Status | using UseGalaxy.eu’s Training infrastructure as a Service (TIaaS). |
| 15 June 2019 | UseGalaxy.eu Tool Updates for 2019-06-15 | |
| 13 June 2019 | Native support for Elixir-AAI in Galaxy v.19.05 | the European Galaxy Server hosted by Elixir Germany is now ready to accept logins from users using their Elixir AAI identity for authentication.. |
| 10 June 2019 | Training Infrastructure Feedback from Nevena Veljkovic | |
| 8 June 2019 | UseGalaxy.eu Tool Updates for 2019-06-08 | |
| 6 June 2019 | UseGalaxy.eu Tool Updates for 2019-06-06 | |
| 6 June 2019 | UseGalaxy.eu update to 19.05 | |
| 3 June 2019 | June 2019 Galactic News | GCC2019 registration / Poster/Demo abstracts / sponsors, GTN CoFest, Platforms, Pubs, Jobs, Blog!, Training, Tools, Releases and more! |
| 24 May 2019 | Queue changes during GCC | |
| 20 May 2019 | Another successful Galaxy workshop in Melbourne | |
| 10 May 2019 | New Paper "The RNA workbench 2.0: next generation RNA data analysis" | |
| 10 May 2019 | Galaxy Workshop registration open! | |
| 6 May 2019 | May 2019 Galactic News | GCC2019 registration / Poster/Demo abstracts / sponsors, GTN CoFest, Platforms, Pubs, Jobs, Blog!, Training, Tools, Releases and more! |
| 26 April 2019 | A successful tool and training workshop for the ELIXIR Galaxy Community at Roscoff | |
| 24 April 2019 | GCC registration is open and abstracts can be submitted until Friday | |
| 23 April 2019 | Visit from Macromolecular Crystallography Group (Diamond Synchrotron) | |
| 23 April 2019 | UseGalaxy.eu Tool Updates for 2019-04-23 | |
| 14 April 2019 | FASTQC jobs and very long reads | |
| 6 April 2019 | UseGalaxy.eu Tool Updates for 2019-04-06 | |
| 4 April 2019 | | |
| 3 April 2019 | April 2019 Galactic News | GCC2019 registration and abstract submission, Platforms, Pubs, Jobs, Blog!, Training, Tools, Releases and more! |
| 3 April 2019 | We passed the 5,000,000th job and 5,000 users! | |
| 24 March 2019 | Convert mass spectrometry data file formats with msconvert | |
| 20 March 2019 | New Paper "Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315" | |
| 19 March 2019 | UseGalaxy.eu update to 19.01 | |
| 18 March 2019 | UseGalaxy.eu Downtime on 18th March | |
| 15 March 2019 | New Paper "Biomolecular Reaction and Interaction Dynamics Global Environment (BRIDGE) | |
| 14 March 2019 | New Paper "The Chimera and the Cyborg" | |
| 4 March 2019 | March 2019 Galactic News | GalaxyAdmins, GCC2019 Childcare sponsors, Platforms, Pubs, Jobs, Blog!, Training, Tools, Releases and more! |
| 4 March 2019 | A(nother) successful Galaxy HTS data analysis workshop in Freiburg | |
| 21 February 2019 | Empowering the annotation and discovery of structured RNAs with scalable and accessible integrative clustering | |
| 15 February 2019 | We are now part of the BioDATEN project! | |
| 11 February 2019 | New Paper "Impact of angiogenic activation and inhibition on miRNA profiles of human retinal endothelial cells" | |
| 11 February 2019 | New Paper "Pou5f3, SoxB1, and Nanog remodel chromatin on High Nucleosome Affinity Regions at Zygotic Genome Activation" | |
| 9 February 2019 | Tool Quest: Do you know the answer? | |
| 27 January 2019 | | |
| 26 January 2019 | | |
| 25 January 2019 | The GOEnrichment tool and tutorial are now available on Galaxy, by Daniel Sobral | |
| 25 January 2019 | Galaxy enhances Introduction to Genomics as part of Master program in Belgrade, by Nevena Veljkovic | |
| 19 January 2019 | A successful Galaxy RNA-seq workshop in Belgrade | |
| 18 January 2019 | Queue cleared | |
| 11 January 2019 | Another European CVMFS mirror is online | |
| 10 January 2019 | The European Galaxy Team has open positions! | |
| 10 January 2019 | Galaxy HTS Workshop 25.2.-1.3.2019 - fully booked | |
| 8 January 2019 | New hardware: 8 x 1 TB memory nodes | |
| 31 December 2018 | New tutorial: Visualization of RNA-Seq results with Volcano Plot | |
| 25 December 2018 | Gajan Kristnaskon kaj bonan novjaron! | |
| 19 December 2018 | Automatic resubmission of failed Galaxy jobs | |
| 11 December 2018 | UseGalaxy.eu update to 18.09 | |
| 1 December 2018 | Nominate a training for the 2019 Galaxy Community Conference (GCC2019) | |
| 30 November 2018 | | |
| 26 November 2018 | European Galaxy Days | |
| 23 November 2018 | ELIXIR Biohackathon in Paris | |
| 21 November 2018 | Automatic workflow testing | |
| 7 November 2018 | Upcoming Server Migration | |
| 5 November 2018 | New Paper "Uncontrolled Diabetes Mellitus Has No Major Influence on the Platelet Transcriptome" | |
| 1 November 2018 | Enthusiastic Response to the First ELIXIR-NL Galaxy Training Course in the Netherlands | |
| 31 October 2018 | Training Infrastructure Feedback from Maria Doyle | |
| 30 October 2018 | New Article 'Selbst ist der Forscher: Big-Data-Analysen leicht gemacht' | |
| 17 October 2018 | Heinz tools for network analysis over transcriptomics datasets | |
| 10 October 2018 | New Article 'Datenanalyse mit dem Galaxy Server' | |
| 10 October 2018 | HiC Workshop for INDEPTH in Lucerne | |
| 10 October 2018 | New Paper "Endothelial cell mineralocorticoid receptors oppose VEGF-induced gene expression and angiogenesis" | |
| 8 October 2018 | Initial release of 'gxadmin' tool | |
| 5 October 2018 | Successful Galaxy Proteomics workshop in Prague | |
| 26 September 2018 | Cloud Migration Postmortem | |
| 25 September 2018 | Galaxy and ... Bioconda, CLIP Explorer and RNA workbench @ GCB 2018 | |
| 24 September 2018 | A successful Galaxy HTS data analysis workshop | |
| 21 September 2018 | UseGalaxy.eu Downtime | |
| 1 September 2018 | Galaxy on de.NBI cloud now with more power | |
| 25 July 2018 | Freiburg Galaxy Team has an open position! | |
| 18 July 2018 | GCCBOSC | |
| 12 July 2018 | Temporarily Held Workflow Invocations | |
| 4 July 2018 | Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization | |
| 4 July 2018 | Bioconda: sustainable and comprehensive software distribution for the life sciences | |
| 3 July 2018 | Tool Usage Graphs | |
| 3 July 2018 | New Paper "The Transcription Factor ETV1 Induces Atrial Remodeling and Arrhythmia." | |
| 18 June 2018 | Database outage affecting UseGalaxy.eu | |
| 6 June 2018 | Data Carpentry workshop and CarpentryCon | |
| 5 June 2018 | Workshop for Galaxy training material and skills improvement | |
| 4 June 2018 | Temporary Quota Issue | |
| 30 May 2018 | New Paper "Nanopolish tools for signal-level analysis of Oxford Nanopore sequencing data is now available in Galaxy" | |
| 28 May 2018 | New Paper "The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update | |
| 25 May 2018 | UseGalaxy.eu update to 18.05 and GDPR | |
| 7 May 2018 | In memory of Christophe Caron | |
| 3 May 2018 | Nanopolish tools for signal-level analysis of Oxford Nanopore sequencing data is now available in Galaxy | |
| 26 April 2018 | DNS outage affecting UseGalaxy.eu | |
| 24 April 2018 | Fileserver Outage affecting Jobs | |
| 23 April 2018 | New Galaxy Team member! | |
| 18 April 2018 | Galaxy Workshop registration open! | |
| 11 April 2018 | Galaxy Africa | |
| 16 March 2018 | Galaxy User Conference: second and last day | |
| 15 March 2018 | Galaxy User Conference: a successful first day | |
| 15 March 2018 | Freiburg Galaxy becomes useGalaxy.eu | |
| 14 March 2018 | ELIXIR Galaxy community kick-off meeting | |
| 14 March 2018 | Updated PhageTerm | |
| 9 March 2018 | Propagating hashtags in a Galaxy history | |
| 8 March 2018 | Map and identify phenotypic mutations in model organism genomes | |
| 6 March 2018 | New paper "Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization" | |
| 3 March 2018 | deepTools3 is now available! | |
| 13 February 2018 | Program for the Galaxy User Conference | |
| 13 February 2018 | ELIXIR Galaxy kick-off meeting 14.03.2018 in Freiburg | |
| 11 February 2018 | Genome Annotation Reloaded | |
| 1 February 2018 | New Paper "Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework" | |
| 30 January 2018 | New Paper "Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo" | |
| 30 January 2018 | We are now part of COST (CA16212)! | |
| 26 January 2018 | Updated Salmonella CRISPR Typing | |
| 26 January 2018 | Next Galaxy Workshop on HTS data analysis in September 2018 | |
| 18 January 2018 | Freiburg Galaxy Team has open positions! | |
| 18 January 2018 | Galaxy Workshop - Registration is closed! | |
| 17 January 2018 | ASaiM - an environment to analyze intestinal microbiota data | |
| 16 January 2018 | New Paper "High-resolution TADs reveal DNA sequences underlying genome organization in flies" | |
| 13 January 2018 | New Paper "Combinatorial omics analysis reveals perturbed lysosomal homeostasis in collagen VII-deficient keratinocytes" | |
| 12 January 2018 | ELIXIR Galxy Admin workshop in Oslo. | |
| 30 December 2017 | HiCExplorer - a suite of tools for reproducible Hi-C data analysis, quality control and visualization | |
| 30 December 2017 | GraphClust - Scalable clustering and annotation of structured and functional RNAs in an accessible and interactive fashion | |
| 11 December 2017 | Post Mortem: 2h Tool Execution Outage | |
| 10 December 2017 | Bioinformatic training with the B3Africa project | |
| 30 November 2017 | Our paper about the Galaxy Training material and community as a preprint on bioRXiv | |
| 30 November 2017 | Updated multiqc | |
| 28 November 2017 | New Paper "Sex differences in peripheral not central immune responses to paininducing injury" | |
| 24 November 2017 | Updated small_rna_maps | |
| 24 November 2017 | Updated Small RNA Signatures | |
| 24 November 2017 | Updated Generate readmap and histograms from alignment files from sRbowtie aligment | |
| 23 November 2017 | Updated DESeq2 | |
| 22 November 2017 | DNA methylation signatures follow preformed chromatin compartments in cardiac myocytes | |
| 21 November 2017 | Post Mortem: Upload and various tool failures | |
| 17 November 2017 | Updated Get flanks | |
| 17 November 2017 | Registration open for Galaxy HTS data analysis workshop 26.02.-02.03.2018 | |
| 17 November 2017 | Updated Fetch closest non-overlapping feature | |
| 16 November 2017 | Updated Subtract | |
| 16 November 2017 | Updated Merge | |
| 16 November 2017 | Updated Join | |
| 16 November 2017 | Updated Intersect | |
| 16 November 2017 | Updated Coverage | |
| 16 November 2017 | Updated Concatenate | |
| 16 November 2017 | Updated Complement | |
| 16 November 2017 | Updated Cluster | |
| 16 November 2017 | Updated Base Coverage | |
| 15 November 2017 | Successful Server Hardware Improvements | |
| 10 November 2017 | Updated Salmonella CRISPR Typing | |
| 9 November 2017 | Updated FASTQ to FASTA | |
| 8 November 2017 | Updated Trinity | |
| 8 November 2017 | 90+ tools updated | |
| 8 November 2017 | Galaxy 17.09 released! | |
| 8 November 2017 | Updated Annotate smRNA dataset | |
| 7 November 2017 | Workshop on Provisioning of Virtual Research Environments and Data Management | |
| 4 November 2017 | Minimap2 mapper for noisy long read sequences (e.g. Nanopore, PacBio) | |
| 2 November 2017 | First imaging mass spectrometry added | |
| 27 October 2017 | Updated Filter sequences by length | |
| 27 October 2017 | Updated Pick Fasta sequences | |
| 25 October 2017 | Latest version of MultiQC | |
| 24 October 2017 | Updated Normalize By Median | |
| 24 October 2017 | Talk @ 5th early-stage researchers Next-Generation Sequencing Symposium | |
| 23 October 2017 | Galaxy Training infrastructure @ de.NBI Symposium | |
| 21 October 2017 | Our paper about BioConda on bioRxiv | |
| 20 October 2017 | Updated NCBI blast suite | |
| 19 October 2017 | Helping at the Software Carpentry workshop @ EMBL Heidelberg and Talk @ de.NBIer | |
| 19 October 2017 | Updated sR_bowtie | |
| 17 October 2017 | MetaboFlow meeting (training and hackathon) | |
| 17 October 2017 | Updated cap3 | |
| 14 October 2017 | Updated Get Fasta from BioMAJ | |
| 13 October 2017 | Updated Retrieve FASTA from NCBI | |
| 13 October 2017 | Updated Parse blast output and compile hits | |
| 13 October 2017 | Updated Oases_optimiser | |
| 13 October 2017 | Updated fasta - tabular | |
| 13 October 2017 | Updated blast_to_scaffold | |
| 13 October 2017 | Updated Clip adapter | |
| 11 October 2017 | Our paper "Practical computational reproducibility in the life sciences" on bioRXiv | |
| 10 October 2017 | BioContainer Hackathon | |
| 29 September 2017 | deNBI Summer School - Computational genomics and RNA biology | |
| 29 September 2017 | VGCN: Rolling Replacement of Cloud Compute Resources | |
| 28 September 2017 | Updated pindel2vcf | |
| 28 September 2017 | FIXED: upload jobs not scheduled | |
| 27 September 2017 | Updated pindel | |
| 26 September 2017 | New Paper "Mitochondrial mutations in human cancer: Curation of translation" | |
| 26 September 2017 | Updated growthpread | |
| 22 September 2017 | End of our 5-day HTS Galaxy workshop in Freiburg, Germany | |
| 20 September 2017 | 3 Galaxy related posters @ GCB 2017 | |
| 14 September 2017 | We passed the 2.000.000th job! | |
| 31 August 2017 | Search and get data from ENA with ENASearch | |
| 31 August 2017 | Fixed: Galaxy Metadata Issue | |
| 2 August 2017 | STAR: Ultrafast alignment of RNA-seq data | |
| 23 July 2017 | Talks, poster and training @ ISMB and BOSC | |
| 2 July 2017 | W4M: Workflow4Metabolomics 3.0 | |
| 30 June 2017 | Galaxy Community Conference (GCC) | |
| 16 June 2017 | Updated macs2 | |
| 10 May 2017 | Updated dsrc | |
| 28 April 2017 | Updated IGblast | |
| 16 March 2017 | Updated STAR | |
| 16 March 2017 | Updated featureCounts | |
| 1 March 2017 | Updated Booster | |
| 20 February 2017 | Updated xxr | |
| 20 February 2017 | Updated elp | |
| 15 February 2017 | Updated breseq | |
| 13 February 2017 | Updated phageterm | |
| 7 February 2017 | Updated capsuleFinder | |
| 26 January 2017 | Updated conjdb | |
| 24 January 2017 | Updated TXSSCAN | |
| 23 January 2017 | Updated parsesnp | |
| 1 January 2017 | Updated blast2myDB | |
