Galaxy Europe News
This page contains announcements of interest to the Galaxy Community. These include items from the Galaxy Team or the Galaxy community and address anything that is of wide interest to the community.
Also see the Galactic Blog for more.
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| 23 May 2025 | Training Infrastructure as a service (TIaaS) Feedback from Dr. Janne M. Toivonen | Thanks to TIaaS, our RNA-Seq workshops run smoothly—no more delays, just effective hands-on learning. |
| 20 May 2025 | Exploring data from BERD Data Portal with Galaxy | Find out how to explore your Data from the NFDI BERD Data Portal directly in Galaxy |
| 18 May 2025 | Training Infrastructure Feedback from the MSc Program „Translational Medical Research“ (TMR), Medical Faculty of Mannheim, University of Heidelberg; WS 2024/25 | From sequencing to R scripting—TIaaS helped us turn RNA-Seq into a hands-on learning success for future medical researchers. |
| 15 May 2025 | Streamlining Bioinformatics Training with Galaxy TIaaS: A Wet Lab Success Story | No more setup headaches—TIaaS lets us deliver scalable, hands-on bioinformatics training that just works. |
| 15 May 2025 | Effortless data labeling with AI support from YOLO and Segment Anything on Galaxy Europe! | Use AnyLabeling in the European Galaxy Server as an interactive tool |
| 12 May 2025 | Empowering Genomics Education with Galaxy TIaaS | TIaaS and Galaxy are transforming how we teach genomics—making hands-on bioinformatics accessible to every student, no coding required. |
| 12 May 2025 | Lights, Camera... Hacking! Highlights from the Galaxy Imaging Hackathon 2025 | Three days of collaborative hacking, coffee-fueled brainstorming, and community-powered innovation—Galaxy Imaging is growing, and so are its FAIR tools! |
| 8 May 2025 | Empowering Wet Lab Scientists with NGS Analysis Skills Without Coding Barriers | Teaching NGS to wet lab scientists got a whole lot easier once I discovered TIaaS and the Galaxy platform. |
| 27 April 2025 | 🌠 Giessen joins the Galaxy Training Academy 2025 with on site support 🎉 | |
| 26 April 2025 | BellaVista interactive tool now available in Galaxy | Open-Source Visualization for Imaging-Based Spatial Transcriptomics |
| 25 April 2025 | Galaxy @ Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection | Know How Sciensano harnesses Galaxy for Advanced Microbial Genomics, Precision Typing, and Rapid Outbreak Detection |
| 23 April 2025 | The BioImage Model Zoo meets the Galaxy platform | New tool to run AI models for image analysis |
| 17 April 2025 | Galaxy Admin Training Interest Survey | ELIXIR Europe and the Galaxy Community are looking to host a Galaxy Admin Training in 2025 |
| 16 April 2025 | 🚀 Survey about a week-long Galaxy Admin Training in Europe 🇪🇺 | |
| 14 April 2025 | Poster session ESSI2.4 at EGU General Assembly 2025 in Vienna, Austria, 27 April–2 May 2025 | EGU25-2605 Posters on site ESSI2.15 |
| 11 April 2025 | ESA Living Planet Symposium 2025 | ESA Living Planet Symposium 2025 |
| 11 April 2025 | Genomics to Notebook (g2nb): extending the computational notebook | An environment that integrates Jupyter with Galaxy, allowing tools to be added as notebook cells, and providing access to thousands of bioinformatics tools from within a notebook interface. |
| 10 April 2025 | Galaxy Job Radar: Making Galaxy More Accessible to Users | Visualizing Galaxy computations to help users understand the Galaxy ecosystem and provide administrators with tools to analyze computational progress. |
| 9 April 2025 | Advancing FAIR and Reproducible Research | |
| 9 April 2025 | BERD Data Portal available in Galaxy | Research your Business, Economic and Related Data from the BERD Data Portal directly in Galaxy |
| 9 April 2025 | Galaxy Newsletter: April 2025 | Catch up on exciting updates from the Galaxy community, including new training opportunities, upcoming conferences, and cutting-edge features in Galaxy 24.2! |
| 7 April 2025 | AquaINFRA, EOSC, and Galaxy: Co-Designing FAIR Services for Aqua Science | AquaINFRA project is going to use the Galaxy platform as the central component of their Virtual Research Environment (VRE). |
| 7 April 2025 | Major Galaxy Europe Efficiency Boost - Mensa next to the Galaxy Europe Office Opens after 5 years! | Work condition improvement and efficiency boost due to renovated university infrastructure at Galaxy Europe |
| 3 April 2025 | MGnify Mettannotator Pipeline v1.0 on Galaxy | Improving Galaxy-based prokaryotic genome annotation by porting and extending the MGnify mettannotator pipeline |
| 2 April 2025 | eLabFTW integration | Bring data to Galaxy straight from the lab. |
| 2 April 2025 | Highlights from the Galaxy Hackathon in Brest, France! | Collaboration, innovation, and waves of creativity—Galaxy dives into data at the FAIR-EASE Hackathon in Brest! |
| 26 March 2025 | 🌠 Join the GTA2025 and learn how to analyze your data using Galaxy | |
| 24 March 2025 | Paper Highlight: “Hydrogen Radical Chemistry at High-Symmetry {2Fe2S} Centers Probed Using a Muonium Surrogate” | Muon spectroscopy (μSR) experiments and simulations on materials for energy applications |
| 21 March 2025 | New Paper "Guidance framework to apply best practices in ecological data analysis: lessons learned from building Galaxy-Ecology" | We are excited to share our recent publication in GigaScience. This paper presents a practical framework aimed at improving transparency, reproducibility, and efficiency in ecological research by leveraging the Galaxy-Ecology platform. |
| 18 March 2025 | Galaxy’s contributions to Genome Assembly and Annotation: Advancing Genomic Science | Know how Galaxy is contributing towards Genome Assembly and Annotation with cutting-edge tools, global biodiversity projects, and training initiatives |
| 17 March 2025 | Galaxy now features comprehensive integration with Onedata — a distributed data management platform. Users gain more options regarding their data sources (Bring Your Own Data) and storage locations (Bring Your Own Storage). | |
| 13 March 2025 | Galaxy at the E-Science Days 2025 in Heidelberg | We are presenting Galaxy's applicability for the Humanities |
| 12 March 2025 | New Paper "Clouds influence the functioning of airborne microorganisms" | Péguilhan et al. have collaborated with Dr. Bérénice Batut and Engy Nasr and used Galaxy for Cloud and Clear skys data analysis in their newly published paper |
| 10 March 2025 | Freiburg is hosting its 20th HTS-Workshop | Time to celebrate! Freiburg is hosting its 20th HTS Workshop this March of 2025 |
| 10 March 2025 | Updates to your InvenioRDM and Zenodo integration in Galaxy | Discover a more streamlined and user-friendly way to manage InvenioRDM-compatible repositories in Galaxy. |
| 7 March 2025 | Enhancing Genomic Research: A comprehensive review of FAIR assembly with ERGA EAR Bot | Explore how the ERGA EAR Bot is revolutionizing FAIR Assembly reviews in genomic research and contributing in advancing the Biodiversity Genomics Europe (BGE) project |
| 7 March 2025 | @gtn:hexylena, as a key member of the phenomenally creative and passionate Galaxy Training Network team alongside @gtn:shiltemann and @gtn:bebatut, pioneered the concept of Training Infrastructure | |
| 4 March 2025 | Highlights of the NFDI4Bioimage All-Hands-Meeting! | Progress, possibilities, and the future: Our journey at the NFDI4Bioimage continues! |
| 3 March 2025 | GloBIAS seminar series - Image analysis using Galaxy | Galaxy Image Analysis was presented at the GloBIAS seminar series |
| 3 March 2025 | With a huge thanks to ELIXIR-UK’s DaSH Fellowship funding, we are delighted to present our new Learning Pathway, “Bioinformatics Projects: Using deconvolution to get new insights from old bulk RNA-seq”. | |
| 27 February 2025 | Brief summary of the Research Data Management with RSpace and Galaxy meeting | Meeting Dr. Mathes from RSpace, the Galaxy Freiburg team explored new ways to streamline research data management. |
| 14 February 2025 | 🌠 Join the GTA2025 and support the event | |
| 14 February 2025 | We held our second 🖖🏾SPOC CoFest, in the great tradition of the excellent CoFests organised in the GTN that welcomed @gtn:nomadscientist and many others into the community. | |
| 14 February 2025 | Molecular Biology of Plants conference (MBP 2025) | Talk entitled DataPLANT, MAdLand, and Galaxy: Tools and Resources for Plant Research |
| 14 February 2025 | We are striking! | usegalaxy.eu closes job-queue on February 14th to support climate strike |
| 13 February 2025 | CellxGene-VIP scRNA-seq, spatial transcriptomics, and multiome data visualization | CELLxGENE-VIP is a frontend plugin of CELLxGENE, enabling users to generate multiple QC plots in high-resolution SVG or PNG format. It can also visualize spatial transcriptomics and 10X multiome. |
| 12 February 2025 | TabPFN: Foundation Model for Tabular Data in Galaxy | Fast machine learning method for making predictions on any tabular data |
| 12 February 2025 | Galaxy Release 24.2 | Check out the newest features and updates on Galaxy! |
| 31 January 2025 | GBCC2025 Logo Contest Winner | The winner of the GBCC2025 Logo Contest is here! |
| 29 January 2025 | EuroScienceGateway Project: Testing the deployment of Galaxy and Pulsar on the EOSC EU Node | Deploy your own Galaxy and Pulsar instances on the EOSC EU Node |
| 24 January 2025 | Information security management systems of the University of Freiburg recertified by TÜV SÜD | |
| 21 January 2025 | BioNT basic curriculum Round Two - Starting in autumn 2024 with the RNA-Seq and Python Workshops | |
| 20 January 2025 | Galaxy instance for sensitive data running in isolated network environment | GDPR-compliant Galaxy clone in isolated environment |
| 9 January 2025 | ELIXIR Funding for FAIRyMAGs: Optimising Metagenomics Assembled Genomes building | FAIRyMAGs: Optimising Metagenomics Assembled Genomes building: workflow finalisation, training material development, real data evaluation and resource allocation tool creation |
| 7 January 2025 | Unlocking Microbial Data Analysis: The microGalaxy Preprint Is Here! | |
| 30 December 2024 | The annual report of the Freiburg Galaxy team 2024 | In this post we summarized the activities and achievements of the Freiburg Galaxy team in 2024. |
| 19 December 2024 | Community Pages | |
| 18 December 2024 | 🚀 2024: A SPOC-tacular Year in Review 🌌 | |
| 18 December 2024 | The Galaxy Training Network joined the BioNT Community Event & CarpentryConnect - Heidelberg 2024 | |
| 18 December 2024 | As we orbit the end of another stellar year, let’s engage warp drive and reflect on the out-of-this-world achievements of the **Single-cell & sPatial Omics Community (SPOC 🖖)**. From launching new tools to charting new tutorials, SPOC’s journey through the Galaxy (platform) has been nothing short of cosmic! 🌠 | |
| 17 December 2024 | Give us feedback and your availability for the GTA 2025 | |
| 12 December 2024 | Galaxy Newsletter: December 2024 | From groundbreaking milestones to exciting new features, join us in celebrating Galaxy’s incredible journey through 2024! Plus, get a sneak peek at what Galaxy has in store for 2025. |
| 6 December 2024 | First SPOC CoFest | |
| 3 December 2024 | Galaxy participation at the EUDAT Conference 2024 | Presenting Galaxy new features at the EUDAT Conference 2024 |
| 2 December 2024 | We would like to recognise and thank all of the reviewers who have contributed to the GTN tutorials; your efforts are greatly appreciated, and we are grateful for your contributions to the GTN community | |
| 29 November 2024 | We are happy to share that a new imaging tutorial for Tracking Mitochondria and Capturing Mitoflashes is now available in the Galaxy Training Network! | |
| 28 November 2024 | de.NBI / ELIXIR-DE All Hands Meeting | The Freiburg Galaxy Team participated in the de.NBI / ELIXIR-DE All Hands Meeting |
| 27 November 2024 | Biological Data Science 2024 | Galaxy had a strong presence at Biological Data Science 2024, featured in talks and posters that showcased its power and versatility in advancing biological research. |
| 26 November 2024 | Text-to-Image Magic: FLUX Models Now in Galaxy! | Turn your text into stunning visuals with FLUX models, now integrated into Galaxy! |
| 23 November 2024 | Enhancing the Galaxy Italian Community: Italy's National Galaxy Server | |
| 21 November 2024 | Galaxy in Research: Transforming life in the tropics using genomic technologies for One Health | How can genomics improve health, food production, and biodiversity in tropical regions? A new review explores how cutting-edge technologies, including Galaxy, are shaping a sustainable future for the tropics. |
| 18 November 2024 | ||
| 18 November 2024 | Massive open online education party: The Galaxy Training Academy | In October 2024, the Galaxy Training Network (GTN) was running a global Galaxy online course |
| 16 November 2024 | Galaxy Docker Image Update: Version 24.1 Released! | Discover Galaxy Docker 24.1 with updated services, streamlined architecture, and new features. |
| 15 November 2024 | Training Infrastructure Feedback from Hans-Rudolf Hotz and Lucille Delisle | We were super happy to stand in front of a group of highly motivated people to teach them galaxy and workflows. |
| 15 November 2024 | MGnify amplicon pipeline v5.0 on Galaxy | Porting the MGnify Amplicon Pipeline v5.0 to Galaxy: A Collaborative Effort with EBI |
| 8 November 2024 | Report from the Helmholtz Metadata Collaboration Conference (HMC) 2024 | Galaxy imaging and RDM workflows were presented at the HMC 2024 |
| 8 November 2024 | Biohackathon Europe 2024: A successful collaborative effort to develop workflows for FAIR Image Analysis using Galaxy | At BioHackathon Europe 2024 in Barcelona, a group of FAIR enthusiasts work on development of image analysis workflows using the Galaxy. |
| 4 November 2024 | ELIXIR Biohackathon in Barcelona | |
| 30 October 2024 | Engaging, Learning, and Sharing at the German Conference of Bioinformatics 2024 with the Galaxy Team! | A recap of our Galaxy team's experience at GCB 2024, featuring insightful talks, interactive poster sessions, hands-on workshops, and memorable social events! |
| 30 October 2024 | Galaxy in Research: Microbial life at Arctic hydrothermal vents | How do hydrothermal vents at the bottom of the Arctic Ocean fuel microbial life? A new study explores the microbial ecosystems thriving at the Aurora and Polaris seamounts, revealing key insights into how hydrogen and sulfur power deep-sea life. |
| 25 October 2024 | Announcing the GBCC2025 Logo Design Contest! | Unleash your creativity for the first-ever Galaxy & Bioconductor Community Conference! |
| 21 October 2024 | EuroScienceGateway at the EOSCxNFDI joint symposium Berlin 2024 | Presenting EuroScienceGateway, Galaxy, and GTN at the joint symposium of EOSC and NFDI 2024 |
| 10 October 2024 | Freiburg Galaxy team at the EGI 2024 | Members from the Freiburg Galaxy team traveled to Lecce, Italy to participate and present the EuroScienceGateway (ESG) project at the EGI2024 meeting from 1st-3rd October. |
| 9 October 2024 | Expanding the Galaxy platform to materials science workflows at STFC | New Opportunities for Better User Group Software (NOBUGS 2024) |
| 1 October 2024 | MAdLand computational resources for the Plant community | The department of Molecular Plant Sciences presented the open, FAIR, and free tools and resources available for the plant research data analysis and data management developed in the MAdLand context. |
| 1 October 2024 | Galaxy in Research: New insights into antibody activation using AlphaFold in Galaxy | How do antigens trigger B-cell receptors (BCRs), and can a single mechanism explain the activation of all BCR types? This study explores a unifying model that integrates various mechanisms of BCR triggering, providing fresh perspectives on antibody activation. |
| 24 September 2024 | Galaxy Newsletter: September 2024 | Discover exciting updates, including the Galaxy Training Academy 2024, ColabFold's arrival on Galaxy, GBCC2025, and major community milestones! |
| 23 September 2024 | 100,000 users for Galaxy-EU | We are thrilled to announce, that UseGalaxy.EU has reached 100,000 users! |
| 21 September 2024 | European Galaxy Team Presents at scverse Conference 2024 | Learn more about the scverse conference 2024 |
| 20 September 2024 | Bring Your Own Storage with Galaxy | Connect Galaxy with external storage resources easily |
| 20 September 2024 | We are striking! | usegalaxy.eu closes job-queue on September 20th to support climate strike |
| 19 September 2024 | The ERGA Assembly Report - a community-developed Genome Assembly QC Document Using Galaxy | Discover more about the ERGA Assembly Report – a comprehensive, community-driven Genome assembly Quality Control Document. |
| 16 September 2024 | Viral pathogen data analysis beyond BY-COVID | A look back at the BY-COVID project and ahead to upcoming developments |
| 5 September 2024 | Galaxy in Research: Uncovering the evolutionary secrets of wild loquats using comparative chloroplast genomics | A new study has sequenced and analyzed two wild loquat chloroplast genomes, revealing key insights into their evolutionary history and the genetic diversity of loquat species. |
| 2 September 2024 | Using Large Language Models in complex workflows | Use ChatGPT in your analysis on the Galaxy Server to leverage the Large Language Model in your automated workflows |
| 26 August 2024 | Registration for the Galaxy Training Academy 2024 | Join us at the Galaxy Training Academy 2024. Learn all about data analysis with Galaxy, for all levels. Registration is open now! |
| 21 August 2024 | Hosting R/Shiny applications on Galaxy (and other frameworks) | Thanks to the outcome of a small Galaxy/Bioconductor hackathon earlier this year, it has become much easier to deploy Shiny applications as interactive tools (ITs) on usegalaxy.eu |
| 20 August 2024 | Opinion: Conda, Anaconda and the much bigger problem behind it | Anaconda, DockerHub, Quay.io, GitHub ... we need to talk about the sustainability of our infrastructure. |
| 19 August 2024 | Galaxy in Research: Advancing quantum materials research with Galaxy | At Oak Ridge National Laboratory, scientists have harnessed the power of Galaxy to bring together cutting-edge computing resources, paving the way for new discoveries in quantum materials through advanced neutron scattering data analysis. |
| 16 August 2024 | Sysadmin Curriculum Planning | Workshop on filling the sysadmin skills gap to support public health bioinformatics & genomic epidemiology in Africa |
| 14 August 2024 | Galaxy in Research: Exploring DNA methylation and aging across diverse human tissues | How does DNA methylation correlate with aging across different human tissues? A new study provides insights into this question, revealing tissue-specific and shared epigenetic patterns. |
| 3 August 2024 | WorkflowHub Publishers and Journal Forum | Meeting Summary from EuroScienceGateway's WorkflowHub Publishers and Journal Forum |
| 30 July 2024 | Galaxy in Research: Exploring Genetic Variability in Almond Blooming | Learn how genetic variations influence the blooming periods of almond cultivars, revealing key insights into their molecular regulation. |
| 29 July 2024 | What do you want to know about Galaxy-EU? Our first "Ask us anything" Q&A session | Galaxy-EU had its first ask us anything live webinar |
| 29 July 2024 | Design rationale for using the Galaxy platform | |
| 26 July 2024 | Shiny phyloseq interactive tool available on usegalaxy.eu - practical outcome of the Bioconductor Hackathon | We are thrilled to announce, that thanks to the help of the Bioconductor community, we could deploy the Shiny phyloseq App as an interactive tool (IT) on usegalaxy.eu |
| 26 July 2024 | IRCCS AOUBO Hospital in Bologna leverages Galaxy Project for diagnosing rare diseases | The Galaxy Project has found its way into the practices of a leading medical institution in Bologna, Italy |
| 24 July 2024 | Galaxy Newsletter: July 2024 | Tune in for exciting updates from GCC2024, the latest Galaxy release, and more in this edition of the Galaxy Newsletter! |
| 22 July 2024 | Have you wondered how difficult Galaxy is to run? How much time people must spend to run Galaxy? In February 2024, we collected 9 responses from the Galaxy Small Scale Admin group | |
| 19 July 2024 | GCC2024 Meeting Report | Discover the highlights from GCC2024, where the Galaxy community gathered in Brno to share insights, innovations, and collaborations. |
| 17 July 2024 | Traefik Reverse Proxy for High Availablilty | A reverse proxy and loadbalancer for two headnode setup at Galaxy Europe |
| 17 July 2024 | Galaxy in Research: Unlocking genetic secrets of Lake Baikal’s endemic sponges | Explore the depths of Lake Baikal and discover how cutting-edge genetic research in Galaxy is unraveling the complex relationships between its unique sponge species. |
| 11 July 2024 | Enabling architectures that collect community-centric research software metadata | The ELIXIR Research Software Ecosystem (RSEc) and the Galaxy Codex make use of GitHub CI bots to collect research software metadata and provide a FAIR tool metadata repository for the global research community |
| 8 July 2024 | Galaxy Social - Democratising Galaxy’s social media activity | A summary of what Galaxy Social is. |
| 8 July 2024 | New Preprint: PathoGFAIR, a collection of FAIR and adaptable (meta)genomics workflows for (foodborne) pathogens detection and tracking | |
| 3 July 2024 | Galaxy in Research: Molecular secrets of minnow adaptation to salinity stress | Discover how advanced transcriptomic analyses in Galaxy reveal the intricate molecular adaptations of minnows to freshwater salinization. |
| 1 July 2024 | Galaxy Community Conference 2024 - a brief summary from the Freiburg Galaxy Team! | A brief summary from the Freiburg Galaxy Team for GCC 2024 |
| 20 June 2024 | EOSC Coordination Meeting, Brussels, Belgium | The Horizon Europe EOSC project EuroScienceGateway attended the EOSC coordination meeting |
| 20 June 2024 | Galaxy Release 24.1 | See what's new on Galaxy with the 24.1 release notes! |
| 11 June 2024 | The EuroScienceGateway (ESG)team, working in the UK to develop Galaxy tools for materials science presented a poster on Applying Galaxy platform to XAS use cases at the Diamond light source spectroscopy user group meeting 2024. | |
| 11 June 2024 | We are happy to announce the Galaxy Training Academy 2024, a global online training event, where learners can get to know Galaxy and learn how to analyze data for various research topics. | |
| 10 June 2024 | The Galaxy Europe team at the ELIXIR All Hands Meeting 2024 | The Galaxy Europe team has participated in the ELIXIR All Hands meeting 2024 in Uppsala, Sweden. |
| 10 June 2024 | The 2024 Galaxy Community Update Paper is Here! | Discover the latest advancements and future directions of the Galaxy Project in the community's newly published 2024 update paper. |
| 6 June 2024 | The GTN hosts its 400th tutorial: Building an amplicon sequence variant (ASV) table from 16S data using DADA2 | |
| 6 June 2024 | The Galaxy Training Network (GTN) has reached an exciting milestone: our 400th tutorial! This achievement is a testament to the dedication and hard work of our community of educators, researchers, and developers over the last 9 years. | |
| 5 June 2024 | Galaxy in Research: Decoding chromatin interactions with asteRIa | Find out how Galaxy helps researchers unlock the mysteries of gene expression regulation through chromatin studies. |
| 4 June 2024 | ||
| 3 June 2024 | UseGalaxy.eu Use Case: Translational Research and Precision Medicine | |
| 3 June 2024 | Galaxy in Research: Investigating Food Safety Threats | Learn how Galaxy can be used to detect and analyze drug-resistant bacteria threatening food safety in Egypt. |
| 3 June 2024 | As part of the EuroScienceGateway and in cooperation with Onedata and EGI we are providing all GTN training data on a publicly accessible cloud storage | |
| 29 May 2024 | EGI Check-in now available as login option in UseGalaxy.eu | EuroScienceGateway project enables EGI users in UseGalaxy.eu |
| 28 May 2024 | Galaxy talks at NeIC 2024 | Two talks about Galaxy, Meta-scheduling and the GTN at the NeIC 2024 - Nordic e-Infrastructure Collaboration Conference (Nordic e-Infrastructure Tomorrow) |
| 28 May 2024 | Develop and engage: Sustainable software tools for large-scale facilities using the Galaxy platform | Talk on Galaxy tools for muon experiments and catalysis research at the CECAM conference |
| 27 May 2024 | All GTN training data in one basket | Providing effortless access to GTN training data via Onedata |
| 22 May 2024 | Are you organizing a training event using GTN materials? You can now add your event directly to the GTN! | |
| 20 May 2024 | EuroScienceGateway project: Easy deployment of ARC endpoints with Infrastructure Manager | Deploy ARC endpoints in the EGI Federated Cloud easily with Infrastructure Manager |
| 16 May 2024 | UseGalaxy.eu Use Case: Profiling of Tregs in Coronary Artery Disease using RNAseq | A report out of Galaxy Europe's user space, by Sheu-Tijani Olawale Abogunloko |
| 15 May 2024 | Galaxy Release 24.0 | Check out the newest features and updates on Galaxy! |
| 15 May 2024 | Description | |
| 15 May 2024 | UseGalaxy.eu Use Case: cardiac regeneration in neonatal mice | A report out of Galaxy Europe's user space, by Mona Malek Mohammadi |
| 14 May 2024 | Galaxy in Research: Exploring the Hidden World of Antarctic Toxins with Galaxy | Discover how Galaxy is helping to unravel the hidden world of peptide toxins in an Antarctic marine invertebrate. |
| 13 May 2024 | We are happy to report that over the years of our fruitful collaboration with ELIXIR TeSS, all GTN materials should receive a perfect score on the FAIR-Checker. | |
| 13 May 2024 | UseGalaxy.eu Use Case: RNA-directed DNA methylation (RdDM) in barley | A report out of Galaxy Europe's user space, by Fabio Miloro |
| 3 May 2024 | InvenioRDM and Zenodo integration in Galaxy | Discover a more streamlined approach to research data management with Galaxy's integration with InvenioRDM-compatible repositories. |
| 2 May 2024 | Transcriptomic Data Analysis Using the Galaxy Platform | An interesting book chapter presents an overview of a transcriptomics data analysis pipeline using Galaxy, specifically designed for studying gene expression in coffee flowers. This pipeline can be leveraged in genetic improvement programs, for instance, to combat climate change |
| 30 April 2024 | How to improve the annotation of Galaxy resources? Outcomes of an online hackathon for improving the annotation of Galaxy resources for microbial data resources | Find out how we improved the annotation of Galaxy tools and training material for microbiological data analysis! |
| 28 April 2024 | Poster highlight: Implementation of a reproducible pipeline for producing seasonal Arctic sea ice forecasts (Stoeckl et al. 2023) | We are thrilled to highlight the poster presentation by Vanessa Stoeckl at the European Geoscience Union (EGU) Conference 2024. " |
| 25 April 2024 | Whisper: An open-source model for speech recognition now available in Galaxy! | Now use Whisper in the European Galaxy Server to recognize and transcribe your speech data🎙️! |
| 25 April 2024 | Using the Galaxy Platform in Large Scale Experiments | The EuroScienceGateway team, working in the UK to develop Galaxy tools for materials science, gave one of the latest webinars of the Physical Sciences Data Infrastructure (PSDI) project. |
| 24 April 2024 | Melbourne Bioinformatics is expanding their team and recruiting three new roles to work on bioinformatics training, outreach, and research. | |
| 22 April 2024 | pairtools: A simple and fast tool suite for processing sequencing data from a Hi-C experiment now in Galaxy! | Now use pairtools in the European Galaxy Server to process your Hi-C experiment data 🧑💻 |
| 18 April 2024 | Talk by Alan Rubin in Freiburg | Bioinformatics club talk by Alan Rubin: Analyzing and Sharing Data from High-throughput Mutagenesis Experiments |
| 15 April 2024 | Tracegroomer: a solution to format and normalise metabolomics data for DIMet tool | Please welcome Tracegroomer - a new member of the Galaxy bookshelf |
| 12 April 2024 | An earth system case study at the EGU 2024 | A Galaxy workflow presented during the European Geoscience Union |
| 12 April 2024 | Annual Report 2023 of the Freiburg Galaxy Team | Report about activities and achievements |
| 28 March 2024 | As part of the work of BeYond COVID, we have developed a new integration between the MINERVA Platform’s COVID-19 Disease Map and Galaxy! Datasets created within Galaxy can now be seamlessly visualized in the MINERVA Platform, allowing you to explore your data in the context of the COVID-19 Disease Map. | |
| 26 March 2024 | ELIXIR-UK’s Data Stewardship Fellowship is excited to announce a new learning pathway focused on FAIR Data Management! This program equips researchers and research support staff with the skills to effectively manage their research data. | |
| 22 March 2024 | BioNT Community Event: Open call for proposals | Are you interested in training and want to exchange and get to know other learning communities? BioNT, together with the Carpentries, is hosting a 3-day community event. |
| 19 March 2024 | James 'JJ' Johnson | |
| 19 March 2024 | Galaxy Team Meeting in Austin, Texas | Check out what was accomplished when part of the Galaxy team got together in Austin, Texas, for a team meeting! |
| 18 March 2024 | Galaxy Newsletter: March 2024 | Dive into the March 2024 Galaxy Newsletter! |
| 18 March 2024 | At the Galaxy Training Network we are really committed to ensuring our training materials are Findable, Accessible, Interoperable, and Reusable | |
| 8 March 2024 | Achievements during the 'Image Analysis in Galaxy' hackathon | Find out the new features that are now available for image analysts! |
| 7 March 2024 | NCBI Foreign Contamination Screen Tool: Now Available in Galaxy! | We are thrilled to have partnered with NCBI to include their Foreign Contamination Screen tool in Galaxy! |
| 4 March 2024 | We know the GTN has a lot of learning materials (400 and counting!) which can make it quite difficult to figure out where to start in some topics. | |
| 1 March 2024 | CellProfiler now available in Galaxy as an interactive tool too | Use CellProfiler as if you were working in your local workstation |
| 29 February 2024 | Building upon the work previously done for the SARS-Cov-2 Topic we have further expanded the ‘tag based topics’ to support a new GMOD topic. | |
| 29 February 2024 | Initial EuroScienceGateway workflows published in WorkflowHub | Workflows covering astronomy, biodiversity, earth science and genomics published in WorkflowHub together with onboarding guide |
| 28 February 2024 | FOSDEM 2024: How Galaxy democratizes data analysis | Galaxy Europe at the Free and Open Source Developers’ European Meeting in Brussels 🍟 |
| 27 February 2024 | Horizon Europe project EOSC EuroScienceGateway at EOSC Winter School 2024 | |
| 26 February 2024 | Molecular Biology of Plants conference (MBP 2024) | Poster Presentation entitled MAdLand Tools & Resources |
| 26 February 2024 | Napari: A fast, interactive, multi-dimensional image viewer on Galaxy! | Use Napari in the European Galaxy Server as an interactive tool |
| 23 February 2024 | DOMPS Plant Science Seminar | Seminar talk entitled MAdLand Resources & Tools presented by Deepti Varshney and Saskia Hiltemann |
| 11 February 2024 | Paper alert: "Galaxy as a gateway to bioinformatics: Multi-Interface Galaxy Hands-on Training Suite (MIGHTS) for scRNA-seq" | |
| 9 February 2024 | PAG31 Meeting Report | Read about Galaxy's participation at PAG31. |
| 7 February 2024 | Galaxy Release 23.2 | Workflow comments, InvenioRDM integration, improved search, admin and config updates and more! |
| 6 February 2024 | The start of OSCARS - an EOSC project | Galaxy Europe being part of the new 'Open Science Clusters' Action for Research & Society' (OSCARS) |
| 4 February 2024 | Satellite data for earth sciences | Jupyterlabs and Notebooks for earth, environment, and climate sciences |
| 30 January 2024 | ||
| 29 January 2024 | ||
| 26 January 2024 | Galaxy is Leaving Twitter/X | Effective March 31st, 2024, Galaxy will be leaving Twitter/X. |
| 24 January 2024 | MAdLandDB: A Comprehensive Protein Database for Plant and Algal Genomes | Exploring MAdLandDB: Protein Sequences across diverse Organisms |
| 17 January 2024 | ||
| 15 January 2024 | Graphical retrospectives of personal and community-wide contributions to Galaxy | Web-based tool to keep track of activities within the different Galaxy communities based on the Git histories of the relevant repositories on GitHub. |
| 30 December 2023 | The annual report of the Freiburg Galaxy team 2023 | In this post we summarized the activities and achievements of the Freiburg Galaxy team in 2023. |
| 23 December 2023 | Galaxy Single-cell Community: Year in Review | The Galaxy Single-cell Community provides a 2023 review! |
| 22 December 2023 | EuroScienceGateway Work Package 3: first year achievements | |
| 19 December 2023 | Galaxy Newsletter: December 2023 | Check out the December 2023 Galaxy Newsletter to learn about some of the highlights of 2023, take a look ahead into 2024, and read some of this year's top Galaxy Success Stories! |
| 18 December 2023 | ||
| 14 December 2023 | Galaxy Europe has been added as a new ELIXIR RIR | usegalaxy.eu is now an ELIXIR Recommended Interoperability Resource! |
| 12 December 2023 | ||
| 29 November 2023 | New Paper "Transformer-based tool recommendation system in Galaxy" | |
| 29 November 2023 | Inference using a publicly available pre-trained AI model (BioModels) in Galaxy | Use a Galaxy tool for making prediction on test data using publicly available pre-trained AI model (BioModels) served via a Docker container |
| 21 November 2023 | ||
| 21 November 2023 | ||
| 21 November 2023 | 2nd BioNT Training workshop - From Hero to Zero with Python | BioNT delivered its second training workshop, From Hero to Zero with Python, from 21th to 24th of November, 2023. This post reports this workshop's organisation, and the backgound and feedback of its applicants and participants. |
| 20 November 2023 | ||
| 14 November 2023 | AquaINFRA - welcome to EuroScienceGateway | A new community AquaINFRA joins the WP5 of European Science Gateway project |
| 14 November 2023 | "Run on Galaxy" button in WorkflowHub | Find solutions and templates in WorkflowHub, immediately import to Galaxy on a click |
| 8 November 2023 | EuroScienceGateway project: new EGI Check-in and WLCG IAM backends available in python-social-auth | Python-social-auth release 4.5.0 includes two new backends contributed by EuroScienceGateway |
| 31 October 2023 | EuroScienceGateway project: Easy deployment of Pulsar endpoints with Infrastructure Manager | Deploy Pulsar endpoints in the EGI Federated Cloud easily with Infrastructure Manager |
| 30 October 2023 | bwHPC Symposium | Introducing Galaxy: A new cloud and HPC gateway for data-driven computational research |
| 30 October 2023 | ELIXIR Biohackathon in Barcelona | |
| 30 October 2023 | An update on Galaxy Genome Annotation | Galaxy as a platform for the annotation of genomes |
| 25 October 2023 | Galaxy and workflows: advancing SARS-CoV-2 genomic surveillance in wastewater | Galaxy empowered research in SARS-CoV-2 surveillance in wastewater |
| 18 October 2023 | Ocean Data View : a new and first of it's kind tool for the Earth-System subdomain | Use Ocean Data View (ODV) in Galaxy Europe as an interactive tool |
| 17 October 2023 | A brand new subdomain of Galaxy Europe : earth-system.usegalaxy.eu | A subdomain to process, analyse and access Earth System and Environmental data |
| 13 October 2023 | The European Galaxy Days are over... | ...but we look back with a relaxed smile. Let's draw the balance! |
| 12 October 2023 | Galaxy goes Research Data Infrastructure | The Galaxy Europe Team active at NFDI's CoRDI (Karlsruhe, Germany, Sep 12th to 14th) |
| 12 October 2023 | ||
| 10 October 2023 | EGI and EuroScienceGateway sign Service-Level Agreement | Elevating FAIR data analytics in EOSC: SLA between ESG and EGI; IISAS to bring in additional resources |
| 6 October 2023 | QGIS : A Geographical Information System on Galaxy ! | Use QGIS in Galaxy Europe as an interactive tool |
| 5 October 2023 | ||
| 5 October 2023 | Galaxy 23.1 Release | Galaxy 23.1 is here! Check out the highlights! |
| 3 October 2023 | New Review Article "A Galaxy of informatics resources for MS-based proteomics" | Mehta et al. have written a review about the Galaxy ecosystem as it has emerged as a pivotal player by providing a range of open-source tools and adaptable computing solutions for proteomics research |
| 29 September 2023 | Success Story: “TIaaS: Training Infrastructure as a Service for an MGnify training” | The MGnify team of EMBL-EBI have used TIaaS to run the MGnify Interactive Tool on scale |
| 28 September 2023 | 1st BioNT Training workshop - A practical introduction to bioinformatics and RNA-seq using Galaxy | BioNT delivered its first training workshop, A practical introduction to bioinformatics and RNA-seq using Galaxy, from 4th to 8th of September, 2023. This post reports this workshop's organisation, the applicants and participants, as well as their feedback about it. |
| 28 September 2023 | New Paper "Integrative meta-omics in Galaxy and beyond" | Schiml *et al.* present three integrative meta-omics workflows, developed in Galaxy, for enhanced analysis and integration of metagenomics, metatranscriptomics, and metaproteomics, combined with a newly developed web-application, ViMO (Visualizer for Meta-Omics) to analyse metabolisms in complex microbial communities. |
| 28 September 2023 | Time to celebrate! | Galaxy having grown up and matured - happy 18th birthday! |
| 25 September 2023 | Connecting Astronomical Data Archives with Galaxy | Enabling astronomers to search and download data from IVOA-compliant archives directly within Galaxy |
| 18 September 2023 | Galaxy taking part @ German Conference on Bioinformatics (GCB) 2023 | From the 11th to the 14th of September, Engy Nasr and Paul Zierep from the Freiburg Galaxy team travelled to Hamburg to join and present their posters at the German Conference on Bioinformatics (GCB) 2023 |
| 15 September 2023 | Interactive tool collection is growing | New and improved interactive tools are available |
| 13 September 2023 | Galaxy Newsletter: September 2023 | Galaxy is excited to announce the relaunch of our Galaxy Newsletter! We are thrilled to share updates on Galaxy, including topics such as events, scientific successes, and general community announcements. |
| 11 September 2023 | We are striking! | usegalaxy.eu closes job-queue on September 15th to support climate strike |
| 23 August 2023 | Galaxy Europe upgrades to Galaxy 23.1 | We may have ancient buildings, but not an outdated Galaxy. The newest Galaxy release is now up and running. |
| 14 August 2023 | GCC2023 Meeting Report | That's a wrap! Catch up on all the highlights from GCC2023 here! |
| 14 August 2023 | ChatGPT in Galaxy via Jupyter notebooks | Use ChatGPT in Galaxy Europe via JupyterLab interactive tool. |
| 11 August 2023 | Survival analysis for right censored data using lifelines | Kaplan-Meier and Cox proportional hazards models are available for testing in Galaxy |
| 7 August 2023 | Generic scatter plots for any Galaxy tabular data | A tool generating interactive HTML scatter plots from Galaxy tabular data is now available for testing |
| 24 July 2023 | Freiburg Galaxy team at the EGI 2023 | From June 19th to 23rd, members from the Freiburg Galaxy team traveled to Poznań, Poland to participate and present the EuroScienceGateway (ESG) project at the EGI2023 meeting |
| 20 July 2023 | ||
| 11 July 2023 | Carbon Emissions Reporting in Galaxy | Dynamic carbon emissions reporting for jobs in Galaxy |
| 7 July 2023 | Platform for Advanced Scientific Computing Conference 2023 | Several Galaxy Community members gathered in Davos |
| 30 June 2023 | Galaxy Single-cell Updates | Latest updates on Galaxy tools, workflows and training materials developed by the Galaxy single-cell community |
| 28 June 2023 | Upscaling file uploads with rustus | Migrating the server software behind our file upload system |
| 27 June 2023 | ||
| 24 June 2023 | ELIXIR releases 2022 Annual Report - the Galaxy perspective | 2022 as a year of growth for ELIXIR, and Galaxy being a part of it. |
| 23 June 2023 | GPU-enabled deep learning on Galaxy | Taking advantage of Galaxy's GPU computing nodes |
| 21 June 2023 | ||
| 16 June 2023 | Freiburg Galaxy team at the ELIXIR All Hands Meeting 2023 | From June 5th to 8th, several members from the Freiburg Galaxy team travelled to Dublin, Ireland to participant and present their work at the ELIXIR All Hands Meeting 2023 |
| 16 June 2023 | Galaxy for Astronomy: Integration of the FITS file format | Enabling native support and visualization of Astronomical FITS data in Galaxy |
| 16 June 2023 | Coordination meeting of EOSC-related projects funded under Horizon Europe | Members of the EuroScienceGateway project attended the EOSC Coordination meeting in Brussels |
| 7 June 2023 | ||
| 6 June 2023 | New Paper "An accessible infrastructure for artificial intelligence using a Docker-based JupyterLab in Galaxy" | |
| 6 June 2023 | EU Maintenance Announcement 12th June | EU database maintenance, 8hrs downtime estimated |
| 3 June 2023 | OSA2Micro – An Open Science Approach for Microbiology data integration | |
| 1 June 2023 | ||
| 22 May 2023 | Stronger together: first FAIR-EASE and EuroScienceGateway workshop | Presenting some outcomes from the first joined FAIR-EASE / EuroScienceGateway workshop |
| 21 May 2023 | New Paper "A panel of blood-derived miRNAs with a stable expression pattern as a potential pan-cancer detection signature" | Sabbaghian and colleagues have used the European Galaxy server to study miRNAs as biomarkers for cancer |
| 17 May 2023 | New Galaxy training: Genome-wide alternative splicing analysis | GTN hosts a new training for analyzing alternative splicing at genome-wide scale |
| 11 May 2023 | ||
| 8 May 2023 | Replacing the Job Router with Zero Downtime on EU | Mothballing the Sorting Hat – how we migrated our dynamic job routing |
| 6 May 2023 | Galaxy taking part @ Applied Bioinformatics & Public Health Microbiology 2023 | From the 3rd to the 5th of May, Engy Nasr from the Freiburg Galaxy team travelled to Hinxton, England to join and present her work at the Applied Bioinformatics & Public Health Microbiology 2023 conference |
| 5 May 2023 | Joining forces in EOSC: OpenAIRE and EuroScienceGateway sign Memorandum of Understanding | EuroScienceGateway and OpenAIRE team up to enhance accessibility and FAIRness of scientific data from the Galaxy project. |
| 21 April 2023 | Galaxy admin training | Galaxy Admin Training from April 17th to 21st in Ghent, Belgium. |
| 21 April 2023 | You understand the data? Call for action! | Civil disobedience by climate activists is neither futile nor a criminal act statement of scientists says |
| 20 April 2023 | ||
| 19 April 2023 | ||
| 19 April 2023 | ||
| 19 April 2023 | ||
| 13 April 2023 | ||
| 31 March 2023 | Using Galaxy & TIaaS to teach hands-on genome assembly and annotation | On Feb. 27 to Mar. 3, we (several VGP-associated instructors) used the UseGalaxy EU infrastructure to aid in teaching an online Physalia course of 40+ students how to assemble and annotate their own genome from their browser. |
| 21 March 2023 | Evaluation of the current usage and future needs of Galaxy for microbial data analysis - We Need Your Help! | The microGalaxy community of practice would like to learn more about use-cases where Galaxy was beneficial, and also the barriers that prevent researchers from using Galaxy. The aim is to collectively find solutions to improve user experience and reduce barriers. To this end, we are launching a survey to reach out to, and learn from, the microbial research community. |
| 21 March 2023 | ||
| 16 March 2023 | New Paper "Return of the Tbx5; lineage-tracing reveals ventricular cardiomyocyte-like precursors in the injured adult mammalian heart" | Siatra et al. have used the European Galaxy server to identify cell populations capable of cardiac regeneration that we will be able to trace and monitor |
| 15 March 2023 | Effortlessly navigate your Galaxy history with enhanced search options | Data searchability in the Galaxy History panel has been taken to new levels with the advanced search options that allow users to not only find items with more ease, but also find relations within items in their history. |
| 14 March 2023 | Enjoy a much faster user interface | Following up on our modernization efforts, we now introduce a single top-router written in Vue, which brings all our Vue components together in a seamless user experience, dramatically reducing the number of required page reloads when navigating the Galaxy user interface. |
| 8 March 2023 | Galaxy Mentor Network: Reset | We launched the [Galaxy Mentor Network](https://galaxy-mentor-network.netlify.app/) one year ago with the idea to onboard new members in the community. Now, one year later, we realize that we failed. We still believe in the power that the Galaxy Mentor Network, and, in that spirit, we would like to relaunch the Galaxy Mentor Network with a new matching process. |
| 8 March 2023 | 23.0 Update | Galaxy EU updates to 23.0 and enables new exciting features |
| 5 March 2023 | New Paper "Comparative phylogenomic insights of KCS and ELO gene families in Brassica species indicate their role in seed development and stress responsiveness" | Khan et al. present a comparative genome-wide analysis and mode of evolution of Ketoacyl-CoA synthase (KCS) and Elongation Defective Elongase (ELO) gene families |
| 28 February 2023 | New Paper "Intrasexual cuticular hydrocarbon dimorphism in a wasp sheds light on hydrocarbon biosynthesis genes in Hymenoptera" | Moris et al. have used the European Galaxy server to exploit the intrasexual CHC dimorphism in a mason wasp, Odynerus spinipes |
| 27 February 2023 | We are striking! | usegalaxy.eu closes job-queue on March 3 to support climate strike |
| 24 February 2023 | New Paper "The Planemo toolkit for developing, deploying, and executing scientific data analyses in Galaxy and beyond" | Bray *et al.* outline the implementation and broad range of functionality of Planemo, a software development kit for designing, testing, and executing Galaxy tools, workflows, and training materials. |
| 23 February 2023 | Exporting structured data like RO-Crate or BioComputeObjects | Galaxy has a very powerful and extensible exporting framework that now can export RO-Crate and BioComputeObjects |
| 20 February 2023 | TIaaS allows trainees’ jobs to be run preferentially and avoids long execution times, depending on the server load. By providing access to this service, the Galaxy Training Network ensured that TIaaS would be freely available to anyone and facilitated access to an extensive catalogue of FAIR training materials. | |
| 20 February 2023 | New Paper "Genome-wide deposition of 6-methyladenine in human DNA reduces the viability of HEK293 cells and directly influences gene expression" | Broche and colleagues have used the European Galaxy server to analyse the role of m6dA in human DNA |
| 9 February 2023 | New Paper "Whole genome sequence analysis of the first reported isolate of Salmonella Agona carrying blaCTX-M-55 gene in Brazil" | Bertani et al. have used the European Galaxy server to analyse the whole genome sequence of Salmonella Agona carrying blaCTX-M-55 gene |
| 8 February 2023 | ||
| 7 February 2023 | Two Horizon Europe projects directed toward the development and deployment of the European Open Science Cloud (EOSC)—FAIR-EASE and EuroScienceGateway (ESG)—have agreed to closely cooperate over the next three years. | |
| 5 February 2023 | How tools are created and maintained in Galaxy | A short summary about Galaxy tools development, maintenance and deployment. |
| 4 February 2023 | VirHunter: detection of novel RNA Viruses in Plant Sequencing Data | A Deep Learning-Based Method for the detection of novel RNA Viruses in Plant Sequencing Data |
| 2 February 2023 | ||
| 26 January 2023 | ||
| 24 January 2023 | Simple and data privacy-aware publishing of genomic variance data from Galaxy to the Beacon project | Galaxy has gained a Beacon integration that enables users to publish genetic variance data conveniently via Beacon project |
| 24 January 2023 | GPU-enabled JupyterLab enables interactive AI use-cases in Galaxy | Democratising GPU infrastructures by providing accelerated JuypterLab instances via Galaxy and combining them with HPC workflows |
| 24 January 2023 | ||
| 23 January 2023 | ||
| 20 January 2023 | Accessibility in Galaxy 23.0 and beyond | Accessibility improvement Highlights for the upcoming 23.0 release, and a few words on accessibility in general |
| 19 January 2023 | Building a distributed compute network across Europe | The Work Package 3 of the EuroScienceGateway project |
| 12 January 2023 | Stimulate FAIR and reusable research with computational workflows | The Work Package 2 of the EuroScienceGateway project |
| 12 January 2023 | The Climate community within the EuroScienceGateway project | Climate Community Strategy for Work Package 5 |
| 9 January 2023 | The Materials Science community within the EuroScienceGateway project | One of the most recent adopters of the Galaxy platfrom |
| 4 January 2023 | New Paper "Multimodal epigenetic changes and altered NEUROD1 chromatin binding in the mouse hippocampus underlie FOXG1 syndrome" | Akol *et al.* analyzed mouse FOXG1 functions on the chromatin level, having processed the multiomics data set on the European Galaxy server. |
| 3 January 2023 | New Paper "STAT3 signaling induced by the IL-6 family of cytokines modulates angiogenesis" | Rapp *et al.* investigated on IL-6 cytokines effects on angiogenesis invoking STAT3 signaling pathway, relying on the European Galaxy server |
| 3 January 2023 | Galaxy is part of NFDI4Bioimage | |
| 20 December 2022 | New Paper "A panel of blood-derived miRNAs with a stable expression pattern as a potential pan-cancer detection signature" | Sabbaghian et al. used the European Galaxy server to identify the roles of miRNAs in cancer |
| 12 December 2022 | The Astronomy community and the EuroScienceGateway project | Towards harmonizing Open Data Practices in Astronomy with EuroScienceGateway community |
| 8 December 2022 | Building blocks for a sustainable operating model of the EuroScienceGateway | Work Package 4 of the EuroScienceGateway project |
| 8 December 2022 | The Biodiversity community and the EuroScienceGateway project | One of the early adopters to embrace Open Science best practices |
| 30 November 2022 | Slow Storage on EU | Storage bottleneck on usegalaxy.eu results in slow queueing times |
| 29 November 2022 | ||
| 24 November 2022 | Use-cases from early adopters to embrace Open Science best practices | Work Package 5 of the EuroScienceGateway project |
| 24 November 2022 | Introduction to the EuroScienceGateway project administration and project management | Work Package 1 of the EuroScienceGateway project |
| 21 November 2022 | Task-based history export tracking | New pull request from David López merged: Add task-based history export tracking |
| 20 November 2022 | Annual EOSC Symposium 14-17th November 2022 | The European Open Science Cloud (EOSC) had its main EOSC annual event. Find photos and recordings here. |
| 18 November 2022 | ||
| 14 November 2022 | BGE - Kickoff meeting | The BGE project kick-off meeting was celebrated between November 14th and November 18th in Leiden. |
| 12 November 2022 | Amazing Twitter Post on Cake-based explanation of single cell RNA sequencing | Combining baking and research |
| 6 November 2022 | EuroScienceGateway - Kickoff meeting | The EuroScienceGateway project started officially with a 2 days kickoff meeting with all 17 partners |
| 5 November 2022 | The start of the EuroScienceGateway - an EOSC project | EuroScienceGateway will deliver a robust, scalable, seamlessly integrated open infrastructure for data-driven research |
| 4 November 2022 | Are you passionate about training in life sciences? The Freiburg Galaxy Team is looking for a team member who will develop, coordinate and implement training programs within international communities, especially via BioNT, a new multi-organization project funded by the European Commission, and via the Galaxy Training Network (GTN). | |
| 1 November 2022 | Impact on Galaxy of OpenSSL 3.0.x Vulnerabilities CVE-2022-3602 and CVE-2022-3786 ("Spooky SSL") | Official severity downgraded to HIGH, exploitability and impact to Galaxy is very low |
| 30 October 2022 | New Paper "Semi-automated assembly of high-quality diploid human reference genomes" | Jarvis et al. determined which combination of current genome sequencing and assembly approaches yield the most complete and accurate diploid genome assembly with minimal manual curation |
| 23 October 2022 | UseGalaxy.eu Tool Updates for 2022-10-23 | |
| 19 October 2022 | Research Data Management in Galaxy | How Galaxy manages your (meta)data |
| 17 October 2022 | Galaxy as a cross-EOSC platform | New scientific collaboration agreement between EOSC-Life and EOSC-Pillar |
| 16 October 2022 | UseGalaxy.eu Tool Updates for 2022-10-16 | |
| 14 October 2022 | Well-being and Mental Health Guideline | Publication of the Guideline |
| 12 October 2022 | Outcomes of the European Galaxy Days | The European Galaxy Community gathered in Freiburg to discuss recent and future Galaxy developments |
| 9 October 2022 | UseGalaxy.eu Tool Updates for 2022-10-09 | |
| 3 October 2022 | UseGalaxy.eu Tool Updates for 2022-10-03 | |
| 2 October 2022 | UseGalaxy.eu Tool Updates for 2022-10-02 | |
| 30 September 2022 | EOSC4Cancer Kick-off Meeting" | EOSC4Cancer has been launched |
| 28 September 2022 | Introducing the Galaxy Global Hub | Find all your Galaxy info in one website |
| 25 September 2022 | UseGalaxy.eu Tool Updates for 2022-09-25 | |
| 18 September 2022 | UseGalaxy.eu Tool Updates for 2022-09-18 | On 2022-09-18, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 11 September 2022 | UseGalaxy.eu Tool Updates for 2022-09-11 | On 2022-09-11, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 11 September 2022 | ||
| 4 September 2022 | UseGalaxy.eu Tool Updates for 2022-09-04 | On 2022-09-04, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 28 August 2022 | UseGalaxy.eu Tool Updates for 2022-08-28 | On 2022-08-28, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 21 August 2022 | UseGalaxy.eu Tool Updates for 2022-08-21 | On 2022-08-21, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 16 August 2022 | UseGalaxy.eu Tool Updates for 2022-08-16 | On 2022-08-16, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 15 August 2022 | UseGalaxy.eu Tool Updates for 2022-08-15 | On 2022-08-15, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 10 August 2022 | The European Galaxy Team is hiring! | The Freiburg Galaxy Team is looking for a Systems Engineer/DevOps Engineer! |
| 7 August 2022 | UseGalaxy.eu Tool Updates for 2022-08-07 | On 2022-08-07, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 5 August 2022 | OpenAPI support in Galaxy and Interactive API Documentation | Since Galaxy release 22.05 it's much easier to discover, explore, learn and experiment with the Galaxy Rest API. |
| 31 July 2022 | UseGalaxy.eu Tool Updates for 2022-07-31 | On 2022-07-31, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 24 July 2022 | UseGalaxy.eu Tool Updates for 2022-07-24 | On 2022-07-24, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 19 July 2022 | UseGalaxy.eu Tool Updates for 2022-07-19 | On 2022-07-19, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 18 July 2022 | UseGalaxy.eu Tool Updates for 2022-07-18 | On 2022-07-18, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 10 July 2022 | UseGalaxy.eu Tool Updates for 2022-07-10 | On 2022-07-10, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 6 July 2022 | New Paper "Creating a good learning and sharing environment for bioinformatics" | Tomas Klingström and J.I. Ohlsson have published a paper about the use of BioContainers, Galaxy, and the GTN for bioinformatics researchers. |
| 3 July 2022 | UseGalaxy.eu Tool Updates for 2022-07-03 | On 2022-07-03, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 27 June 2022 | UseGalaxy.eu Tool Updates for 2022-06-27 | On 2022-06-27, the tools on UseGalaxy.eu were updated by our automated tool update and installation process. |
| 27 June 2022 | GCC2022: Registration open for Webinar mode | For those that won't attend in person, the GCC Organizing Committee is happy to announce a virtual webinar-like option |
| 23 June 2022 | Usegalaxy.eu has reached 50,000 registered users | Big thanks to everybody that has contributed to the success of UseGalaxy.eu and to each of the 50K users for using Galaxy! Next stop: 100K! |
| 23 June 2022 | One aim of the BY-COVID project is to build a framework enabling data from newly emerging infectious disease threats to be made rapidly and widely accessible. | |
| 21 June 2022 | Galaxy taking part @ Elixir All Hands 2022 | During 6-9th of June, members of the European Galaxy team travelled to Amsterdam to join the ELIXIR All Hands meeting 2022 where we joined other colleagues from ELIXIR-DE. |
| 19 June 2022 | UseGalaxy.eu Tool Updates for 2022-06-19 | On 2022-06-19, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #332 |
| 12 June 2022 | UseGalaxy.eu Tool Updates for 2022-06-12 | |
| 5 June 2022 | UseGalaxy.eu Tool Updates for 2022-06-05 | |
| 2 June 2022 | ||
| 29 May 2022 | UseGalaxy.eu Tool Updates for 2022-05-29 | On 2022-05-29, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #329 |
| 27 May 2022 | New Paper "Transcriptome profiling of cisplatin resistance in triple-negative breast cancer: New insight into the role of PI3k/Akt pathway" | Amir Sabbaghian and colleagues have published a paper related to the resistance to cisplatin in the treatment of triple negative breast cancer. |
| 23 May 2022 | UseGalaxy.eu Tool Updates for 2022-05-23 | |
| 20 May 2022 | ||
| 15 May 2022 | UseGalaxy.eu Tool Updates for 2022-05-15 | |
| 8 May 2022 | UseGalaxy.eu Tool Updates for 2022-05-08 | |
| 1 May 2022 | UseGalaxy.eu Tool Updates for 2022-05-01 | |
| 28 April 2022 | Training Infrastructure Feedback from Hans-Rudolf Hotz and Lucille Delisle | After 2 years running the SIB "Galaxy Introduction for Life Scientists" course only online, we were super happy to stand in front of a crowd and meet again the students in person. |
| 24 April 2022 | UseGalaxy.eu Tool Updates for 2022-04-24 | On 2022-04-24, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #323 |
| 20 April 2022 | Towards a sustainable storage, enabling co-financing of public infrastructure | Research groups and networks can include their own storage into the European Galaxy server and decide about quota and data policies. |
| 17 April 2022 | UseGalaxy.eu Tool Updates for 2022-04-17 | |
| 12 April 2022 | It has been a long discussed feature within the GTN Tutorial Author Community: how can we provide trainees with choice in their tutorials, and how can we as trainers not duplicate large tutorials just to show a slightly different path at one point?. | |
| 11 April 2022 | Complete human genome T2T-CHM13v2.0 available in Galaxy | Something that the scientific community has been eagerly awaiting: the first complete, gap-free sequence for all 24 human chromosomes (including Y) |
| 10 April 2022 | UseGalaxy.eu Tool Updates for 2022-04-10 | |
| 3 April 2022 | UseGalaxy.eu Tool Updates for 2022-04-03 | |
| 28 March 2022 | UseGalaxy.eu Tool Updates for 2022-03-28 | |
| 23 March 2022 | Enough talking - time to act! | The next global climate strike will be on March 25! |
| 20 March 2022 | UseGalaxy.eu Tool Updates for 2022-03-20 | |
| 20 March 2022 | Genomic analysis on Galaxy using Azure CycleCloud | |
| 14 March 2022 | We are proud to announce that, as result of the collaboration with the Vertebrate Genomes Project (VGP), a new training describing the VGP assembly pipeline is now available in the Galaxy Training Network | |
| 14 March 2022 | UseGalaxy.eu Tool Updates for 2022-03-14 | |
| 13 March 2022 | Announcing the Workflows Community Initiative (WCI) | The Workflows Community Initiative has lunched the new website at workflows.community. The Freiburg Galaxy team is part of this Inititive to help improving computational workflows for everyone. |
| 13 March 2022 | Announcing the Workflows Community Initiative (WCI) | |
| 7 March 2022 | New Paper "Distal and proximal cis-regulatory elements sense X chromosome dosage and developmental state at the Xist locus" | Congratulations Rutger Gjaltema and team for your latest findings about X chromosome regulations. |
| 7 March 2022 | New Paper "Gut microbiota drives age-related oxidative stress and mitochondrial damage in microglia via the metabolite N6-carboxymethyllysine" | Our work led by Omar Mossad and Thomas Blank (Institute of Neuropathology, University of Freiburg) has been published last week in Nature Neuroscience |
| 6 March 2022 | UseGalaxy.eu Tool Updates for 2022-03-06 | |
| 5 March 2022 | New Paper "Impact of high platelet turnover on the platelet transcriptome: Results from platelet RNA-sequencing in patients with sepsis" | Thomas Nührenberg and team published a new paper in PLOS ONE about the "Impact of high platelet turnover on the platelet transcriptome". |
| 28 February 2022 | New Paper "Pluripotency factors determine gene expression repertoire at zygotic genome activation" | |
| 27 February 2022 | UseGalaxy.eu Tool Updates for 2022-02-27 | |
| 25 February 2022 | New Paper "Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework" | Matthias Fahrner from the University of Freiburg is defending his PhD today. |
| 25 February 2022 | Machine learning in Galaxy | Artificial intelligence (machine learning and deep learning) algorithms are being increasingly applied in several fields of Bioinformatics such as drug-response and protein structure prediction, imputing missing data in single-cell gene expression, modelling evolution in biological sequences and many more. |
| 24 February 2022 | AlphaFold now available in Galaxy | It seems the whole world is talking about AlphaFold, the AI system that predicts a protein’s 3D structure from its amino acid sequence that achieves accuracy comparable with real-life experiments. |
| 22 February 2022 | ELIXIR staff exchange between the German and Italian ELIXIR nodes | |
| 21 February 2022 | New Paper "The temperature-regulated DEAD-box RNA helicase CrhR interactome: autoregulation and photosynthesis-related transcripts" | Thanks Anzhela Migur and team for sharing your recent work about the temperature-regulated DEAD-box RNA helicase CrhR interactome. |
| 20 February 2022 | UseGalaxy.eu Tool Updates for 2022-02-20 | |
| 15 February 2022 | Protein target prediction of a bioactive ligand with Align-it and ePharmaLib | Bioactive compounds often bind to several target proteins, thereby exhibiting polypharmacology. |
| 14 February 2022 | UseGalaxy.eu Tool Updates for 2022-02-14 | |
| 13 February 2022 | UseGalaxy.eu Tool Updates for 2022-02-13 | |
| 6 February 2022 | UseGalaxy.eu Tool Updates for 2022-02-06 | |
| 1 February 2022 | IT security management of the University of Freiburg certified by TÜV SÜD | TÜV SÜD has awarded the University's data centre the international certification for information security management systems ISO/IEC 27001. |
| 1 February 2022 | IT security management of the University of Freiburg certified by TÜV SÜD | |
| 29 January 2022 | UseGalaxy.eu Tool Updates for 2022-01-29 | |
| 28 January 2022 | Further building on the work in the automatic Jupyter Notebook, we’ve now re-written the Jupyter export to be faster, and more importantly added support for R and RMarkdown! | |
| 23 January 2022 | UseGalaxy.eu Tool Updates for 2022-01-23 | |
| 20 January 2022 | Usegalaxy.eu surpassed 40.000 registered users | We are celebrating that usegalaxy.eu reached 40,000 registered users last November! Over the last year, the number of registered users has almost doubled, from 25,000 to more than 41,000 by January 2022. |
| 16 January 2022 | New Pre-Print "Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function" | Among the 30 non-synonymous nucleotide substitutions in the Omicron S-gene are 13 that have only rarely been seen in other SARS-CoV-2 sequences. |
| 14 January 2022 | UseGalaxy.eu Tool Updates for 2022-01-14 | |
| 17 December 2021 | UseGalaxy.eu Tool Updates for 2021-12-17 | |
| 16 December 2021 | Usegalaxy.eu project infrastructure and CVE-2021-44228 vulnerability | The Freiburg galaxy team reviewed the Usegalaxy.eu software stack, looking for the presence of vulnerable versions of the Log4j library. |
| 14 December 2021 | A second Smörgåsbord with even more Galaxy Training | |
| 14 December 2021 | ||
| 14 December 2021 | The Galaxy Training Network will now support annotating Funding Agencies on training materials. | |
| 8 December 2021 | Accessible and scalable detection and identification of foodborne pathogens, a project with Biolytix and funded by EOSC-Life | Thanks to funding from EOSC-Life, the Freiburg Galaxy team will work in 2022 with Biolytix, a Swiss Small and Medium-sized Enterprise (SME) specialized in molecular biology and microbiological analyses, toward Accessible and scalable detection and identification of foodborne pathogens. |
| 1 December 2021 | Find out how contributing simple markdown tutorials can result in fantastically FAIR training. | |
| 1 December 2021 | ||
| 1 December 2021 | We have just finished a new collection of training material for genome assembly and annotation! | |
| 29 November 2021 | Omicron and SARS-CoV-2 genome surveillance | A first view of the Omicron lineage’s mutational pattern derived transparently and fully reproducibly from raw sequencing reads |
| 27 November 2021 | UseGalaxy.eu Tool Updates for 2021-11-27 | |
| 25 November 2021 | An overview and statistics on the Galaxy Help Forum | From the GHelp supporting group, we thank you for the trust you place in us every day. |
| 25 November 2021 | ||
| 23 November 2021 | Videos from online training events are now easier to find. | |
| 23 November 2021 | ||
| 21 November 2021 | UseGalaxy.eu Tool Updates for 2021-11-21 | |
| 17 November 2021 | 4th de.NBI Cloud User meeting | The 4th de.NBI Cloud User meeting took place from 12th to 24th of November 2021. Many researchers from different bioinformatics research areas gathered to learn more about cloud computing and the de.NBI Cloud. |
| 15 November 2021 | Biohackathon Europe 2021 | Last week we had the BioHackathon Europe 2021 in Barcelona, as a hybrid event and with participants from all over the world. |
| 13 November 2021 | Training Infrastructure feedback: FORCeS eScience course | Tools in Climate Science: Linking Observations with Modelling |
| 13 November 2021 | UseGalaxy.eu Tool Updates for 2021-11-13 | |
| 10 November 2021 | Access data from the GTN in a more accessible, API based way. | |
| 10 November 2021 | ||
| 6 November 2021 | UseGalaxy.eu Tool Updates for 2021-11-06 | |
| 2 November 2021 | Galaxy Release 21.09 | Tool Panel Views, Collections, Reports, Remote Data, FastAPI, SQLAlchemy & much more! |
| 30 October 2021 | UseGalaxy.eu Tool Updates for 2021-10-30 | |
| 23 October 2021 | UseGalaxy.eu Tool Updates for 2021-10-23 | |
| 18 October 2021 | Training Infrastructure Feedback from Dr. Theodora Tsirka | We have received feedback about TIaaS from Dr. Theodora Tsirka, during the Training School on Microbiome Sequencing and Data Analysis |
| 16 October 2021 | UseGalaxy.eu Tool Updates for 2021-10-16 | |
| 13 October 2021 | BY-COVID: A new EU project for pandemic preparedness | A new €12 million Horizon Europe funded project which will tackle the data challenges that can hinder effective pandemic response. |
| 12 October 2021 | UseGalaxy.eu Use Case: cellular specification, differentiation and morphogenesis of the mucociliary epithelium | Sarah Bowden from the Innere Medizin IV (Nephrologie und Allgemeinmedizin) and ZBSA - Center for Biological Systems Analysis in Freiburg (Germany) has shared with us the main area of research of her project. |
| 12 October 2021 | ||
| 12 October 2021 | As part of our work under the Gallantries Grant we are establishing a new topic within the GTN specifically focused on Data Science skills. | |
| 11 October 2021 | UseGalaxy.eu Use Case: microRNAs in heart disease | Ileana Duran Fernandez from the School of Medicine of the Technical University of Munich works on heart disease. |
| 8 October 2021 | A proteomics sample metadata representation for multiomics integration and big data analysis | An extension and implementation of the MAGE-TAB format for proteomics (MAGE-TAB-Proteomics). |
| 6 October 2021 | New brochure from ELIXIR Germany | ELIXIR Germany has published the handout "ELIXIR GERMANY - Shaping the Bioinformatics Infrastructure for Life Sciences in Europe". |
| 5 October 2021 | UseGalaxy.eu FTP Server Update | On 2021-10-06, the FTP server accessible through the domain ftp.usegalaxy.eu will be upgraded with a new hardware and a new configuration. |
| 2 October 2021 | UseGalaxy.eu Tool Updates for 2021-10-02 | |
| 1 October 2021 | Teaching bioinformatics through blood, mucus and tears | Watch out for that My Little Pony baby stroller. |
| 29 September 2021 | ||
| 29 September 2021 | ||
| 26 September 2021 | UseGalaxy.eu Tool Updates for 2021-09-26 | |
| 24 September 2021 | ||
| 23 September 2021 | New Paper "Ready-to-use public infrastructure for global SARS-CoV-2 monitoring" | |
| 20 September 2021 | UseGalaxy.eu Tool Updates for 2021-09-20 | |
| 17 September 2021 | Enough talking - time to act! | |
| 15 September 2021 | UseGalaxy.eu as a cross-disciplinary platform for European researchers | |
| 11 September 2021 | UseGalaxy.eu Tool Updates for 2021-09-11 | |
| 10 September 2021 | Annual reports 2020: ELIXIR and IFB | The ELIXIR and IFB annual reports for 2020 are out, and they highlight Galaxy work throughout. |
| 4 September 2021 | UseGalaxy.eu Tool Updates for 2021-09-04 | |
| 3 September 2021 | UseGalaxy.eu Use Case: Marine turtle tumour disease | |
| 1 September 2021 | Win, Win, Win. When users support education programs to say thanks for free Galaxy resources | |
| 28 August 2021 | UseGalaxy.eu Tool Updates for 2021-08-28 | |
| 27 August 2021 | UseGalaxy.eu Use Case: Antibody responses following vaccination | |
| 24 August 2021 | Training Infrastructure as a Service (TIaaS) is sponsored by EOSC-Life | Anyone providing training is eligible to request the use of this service. |
| 24 August 2021 | Updates from the ELIXIR Galaxy Community | An updated ELIXIR Galaxy website includes our goals, with a special emphasis on interactions with the local, domain-specific and global communities; plus much more |
| 21 August 2021 | UseGalaxy.eu Tool Updates for 2021-08-21 | |
| 20 August 2021 | UseGalaxy.eu Use Case: Food safety research | |
| 14 August 2021 | UseGalaxy.eu Tool Updates for 2021-08-14 | |
| 13 August 2021 | UseGalaxy.eu Use Case: Sex determination of fish species | |
| 7 August 2021 | UseGalaxy.eu Tool Updates for 2021-08-07 | |
| 30 July 2021 | UseGalaxy.eu Use Case: Circadian research | |
| 28 July 2021 | ||
| 27 July 2021 | UseGalaxy.eu Tool Updates for 2021-07-27 | |
| 27 July 2021 | ||
| 25 July 2021 | UseGalaxy.eu Tool Updates for 2021-07-25 | |
| 23 July 2021 | UseGalaxy.eu Use Case: Heart research | |
| 21 July 2021 | Freiburg Galaxy Team at the Galaxy Community Conference 2021 | |
| 17 July 2021 | UseGalaxy.eu Tool Updates for 2021-07-17 | |
| 16 July 2021 | UseGalaxy.eu Use Case: Epigenomics and transcriptomics in cancer | |
| 13 July 2021 | Highlights from the Galaxy Community Conference 2021 | 399 participants from 55 countries |
| 10 July 2021 | UseGalaxy.eu Tool Updates for 2021-07-10 | |
| 9 July 2021 | UseGalaxy.eu Use Case: Plant genomics | |
| 5 July 2021 | UseGalaxy.eu Use Case: colorectal cancer research | |
| 4 July 2021 | ownCloud and Nextcloud integration for your private data | |
| 3 July 2021 | UseGalaxy.eu Tool Updates for 2021-07-03 | |
| 2 July 2021 | "Galaxy for microbiome via ASaiM story - From a local project to a global effort to support microbiome data analysis" - Talk at Holistic Bioinformatic Approaches used in Microbiome Research | |
| 2 July 2021 | UseGalaxy.eu Use Case: Genomics, evolution, and ecology of organohalide-respiring bacteria | |
| 1 July 2021 | Women in Data Science 2021 - Perspectives in Industry and Academia - Join Bayer AG and de.NBI / ELIXIR Germany event | |
| 30 June 2021 | ||
| 28 June 2021 | Open Life Science program & the Galaxy community: involvement in OLS-3 and invitation to apply to the next cohort | Open Life Science (OLS) is an online mentoring & training program |
| 26 June 2021 | UseGalaxy.eu Tool Updates for 2021-06-26 | |
| 26 June 2021 | ||
| 25 June 2021 | UseGalaxy.eu Use Case: Genetics research on dairy cattle | |
| 25 June 2021 | ||
| 21 June 2021 | UseGalaxy.eu Tool Updates for 2021-06-21 | |
| 19 June 2021 | UseGalaxy.eu Tool Updates for 2021-06-19 | |
| 18 June 2021 | UseGalaxy.eu Use Case: Zika virus effects on brain and brain tumours | |
| 12 June 2021 | UseGalaxy.eu Tool Updates for 2021-06-12 | |
| 11 June 2021 | ||
| 10 June 2021 | Training Infrastructure Feedback from Abdus Salam | |
| 9 June 2021 | A Galaxy of tools at your fingertips inside of Broad Institutes Terra | |
| 7 June 2021 | New Paper "Galaxy-ML: An accessible, reproducible, and scalable machine learning toolkit for biomedicine" | The Galaxy-ML platform provides all the tools necessary to define a learner, train it, evaluate it, and visualize its performance. |
| 5 June 2021 | UseGalaxy.eu Tool Updates for 2021-06-05 | |
| 4 June 2021 | ||
| 1 June 2021 | ||
| 29 May 2021 | UseGalaxy.eu Tool Updates for 2021-05-29 | |
| 29 May 2021 | New Paper "Tryptophan metabolism drives dynamic immunosuppressive myeloid states in IDH-mutant gliomas" | |
| 28 May 2021 | Webinars: Galaxy Resources for ... | Watch them now. |
| 25 May 2021 | ||
| 25 May 2021 | New Paper "Robust and efficient single-cell Hi-C clustering with approximate k-nearest neighbor graphs" | |
| 25 May 2021 | ||
| 20 May 2021 | The first Spanish tutorial is live! Galaxy has always had google-translated tutorials, but we are now embarking on a project to assess the learning experience with human-translated, vs google-translated, bioinformatics tutorials. | |
| 20 May 2021 | ||
| 19 May 2021 | UseGalaxy.eu Apollo Update | |
| 14 May 2021 | Two New Teaching Papers using Galaxy | Two hand-in-hand teaching papers have been published this week using Galaxy as a teaching platform. |
| 13 May 2021 | UseGalaxy.eu Tool Updates for 2021-05-13 | |
| 13 May 2021 | New Paper "Novel insights into the electrophysiology of murine cardiac macrophages: relevance of voltage-gated potassium channels" | |
| 11 May 2021 | COVID updates: B.1.617.2 detected in COG-UK data from the beginning of April | We checked the COG-UK data to see if we’d find representative samples of B.1.617.2 (one of the Indian lineages, and a Variant of Concern). |
| 11 May 2021 | UseGalaxy.eu Tool Updates for 2021-05-11 | |
| 4 May 2021 | GCC2021 Abstract and Fellowship Submission, and Early Registration Deadlines Extended | Talks & Fellowships due 17 May; Poster/Demos due 14 June |
| 4 May 2021 | May 2021 Galactic News | GCC2021 and James Taylor Video Deadlines Extended, plus a whole lot more. |
| 30 April 2021 | Outcomes of the workshop 'SARS-CoV-2 Data Analysis and Monitoring with Galaxy' | Building capacity, both in the analysis and data management sides of SARS-CoV-2 |
| 30 April 2021 | Plant Transcriptomics Workshop: A Summary | New platform, new learners, new paradigms. |
| 29 April 2021 | Monitoring of raw open data for SARS-CoV-2 genome surveillance | UseGalaxy.eu is now automatically collecting, and analyzing raw sequencing data published by the COVID-19 Genomics UK Consortium (COG-UK). |
| 26 April 2021 | UseGalaxy.eu Tool Updates for 2021-04-26 | |
| 25 April 2021 | 30,000 users | |
| 19 April 2021 | The Galaxy community involved in several ELIXIR Implementation Studies | |
| 17 April 2021 | UseGalaxy.eu Tool Updates for 2021-04-17 | |
| 15 April 2021 | ||
| 14 April 2021 | GCC2021 Registration is Open | Please join us at Galaxy's annual community gathering |
| 14 April 2021 | GCC2021 Abstract Submission are Open | Abstracts are due May 17 |
| 14 April 2021 | GCC2021 Conference Fellowships | Apply by May 17 |
| 14 April 2021 | UseGalaxy.eu Tool Updates for 2021-04-14 | |
| 12 April 2021 | April 2021 Galactic News | GCC2021 Abstracts and Registration are open, plus lots more. |
| 10 April 2021 | UseGalaxy.eu Tool Updates for 2021-04-10 | |
| 10 April 2021 | ||
| 8 April 2021 | Updates from the Single-Cell Community in Freiburg | |
| 6 April 2021 | ||
| 3 April 2021 | Training Infrastructure Feedback from Simon Gladman | |
| 3 April 2021 | UseGalaxy.eu Tool Updates for 2021-04-03 | |
| 30 March 2021 | ||
| 29 March 2021 | New Paper "The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies" | |
| 29 March 2021 | New Paper "CryptoGenotyper: A new bioinformatics tool for rapid Cryptosporidium identification" | |
| 28 March 2021 | Training Infrastructure Feedback from Dr. Fotis Psomopoulos | |
| 27 March 2021 | UseGalaxy.eu Tool Updates for 2021-03-27 | |
| 25 March 2021 | Training Infrastructure Feedback from Dr. Ricardo Gonzalo Sanz | |
| 25 March 2021 | How to import a workflow from the Workflow Hub and run it on remote COVID-19 data | |
| 25 March 2021 | Galaxy-ELIXIR webinars series: Advanced Features | |
| 24 March 2021 | ||
| 24 March 2021 | ||
| 22 March 2021 | Training Infrastructure Feedback from Martin Čech | |
| 20 March 2021 | UseGalaxy.eu Tool Updates for 2021-03-20 | |
| 19 March 2021 | ||
| 19 March 2021 | Training Infrastructure Feedback from Dr. Tuan Leng Tay | |
| 18 March 2021 | ||
| 18 March 2021 | ||
| 18 March 2021 | ||
| 17 March 2021 | March 2021 Galactic News | New Featured and Community News sections; new events, releases, training, and lots of videos |
| 17 March 2021 | ||
| 17 March 2021 | ||
| 16 March 2021 | 2021 Google Summer of Code | Galaxy is participating |
| 16 March 2021 | UseGalaxy.eu Tool Updates for 2021-03-16 | |
| 16 March 2021 | ||
| 16 March 2021 | ||
| 16 March 2021 | ||
| 13 March 2021 | RADseq data analysis (on mobile phone while baby is sleeping) | (on mobile phone while baby is sleeping) |
| 10 March 2021 | Successful use cases from EOSC-Life using Galaxy | The first round of EOSC-Life demonstrators has driven eight successful use cases, three of them using Galaxy. |
| 9 March 2021 | The European HealthyCloud consortium kick-off is today! | |
| 7 March 2021 | New Paper "ChiRA: an integrated framework for chimeric read analysis from RNA-RNA interactome and RNA structurome data" | |
| 6 March 2021 | European Galaxy Server part of CatRIS | |
| 1 March 2021 | ||
| 28 February 2021 | New introductory video to the Galaxy Training Network | |
| 27 February 2021 | UseGalaxy.eu Tool Updates for 2021-02-27 | |
| 25 February 2021 | Galaxy-ELIXIR webinar series: Open Data Infrastructures to tackle COVID-19 pandemic | |
| 22 February 2021 | Training Infrastructure Feedback from Mali Salmon-Divon | |
| 20 February 2021 | Login via ELIXIR-AAI, Google, LinkedIn, or your ORCID iD | |
| 20 February 2021 | UseGalaxy.eu Tool Updates for 2021-02-20 | |
| 18 February 2021 | New Paper "Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities" | |
| 18 February 2021 | Meet & Join the Galaxy Community | |
| 17 February 2021 | Chceme od tebe slyšet! | |
| 15 February 2021 | Using secure BioContainers to run Galaxy tools | |
| 14 February 2021 | Massive open online education party: GTN Smörgåsbord | Starting Monday the 15th of February, the Galaxy Training Network (GTN) is running a global Galaxy online course |
| 13 February 2021 | UseGalaxy.eu Tool Updates for 2021-02-13 | |
| 8 February 2021 | February 2021 Galactic News | Events, platform news, blog posts, videos, pubs, jobs and releases |
| 8 February 2021 | ||
| 6 February 2021 | Galaxy Metabolomics Mini-Symposium report | next meetings are planned for March 11, May 6 and at the Galaxy Community Conference in July. |
| 6 February 2021 | UseGalaxy.eu Tool Updates for 2021-02-06 | |
| 5 February 2021 | The European Galaxy server listed as an official resource on the COVID-19 Data Portal | |
| 5 February 2021 | New hardware: More RAM | |
| 4 February 2021 | 2021 Galaxy Community Conference will be virtual, global, and affordable | And globally accessible |
| 4 February 2021 | ||
| 1 February 2021 | Three articles related to COVID-19 research using Galaxy in the de.NBI brochure | Just part of how de.NBI is supporting COVID-19 research |
| 30 January 2021 | New and updated CNV and Variant Calling tools | on UseGalaxy.eu and in the Toolshed |
| 30 January 2021 | UseGalaxy.eu Tool Updates for 2021-01-30 | |
| 30 January 2021 | ISMB 2020 conference videos available on YouTube | |
| 28 January 2021 | Training Infrastructure Feedback from Lachlan Gray | |
| 26 January 2021 | UseGalaxy.eu Tool Updates for 2021-01-26 | |
| 22 January 2021 | Variant Analysis of SARS-CoV-2 Sequencing Data (Jan 2021 update) | January 2021 update |
| 18 January 2021 | Nora, the new visualisation in Galaxy | A new framework for medical imaging research |
| 18 January 2021 | UseGalaxy.fr is hiring | |
| 18 January 2021 | Major update to SearchGUI and PeptideShaker | |
| 15 January 2021 | New Galaxy Community Organization: Working Groups | |
| 12 January 2021 | Nominate a training for the 2021 Galaxy Community Conference (GCC2021) | |
| 11 January 2021 | New Paper "Tool recommender system in Galaxy using deep learning" | by Anup Kumar, Helena Rasche, Björn Grüning, Rolf Backofen in GigaScience |
| 7 January 2021 | January 2021 Galactic News | Events, platform news, blog posts, videos, pubs, jobs and releases |
| 4 January 2021 | GTN Plant-related trainings | |
| 2 January 2021 | UseGalaxy.eu Tool Updates for 2021-01-02 | |
| 31 December 2020 | The European Galaxy Server in 2020 | What a shitty year! But it’s over and we hope you and your family are safe and healthy. |
| 28 December 2020 | European Galaxy Flavours | |
| 26 December 2020 | UseGalaxy.eu Tool Updates for 2020-12-26 | |
| 24 December 2020 | UseGalaxy.eu Tool Updates for 2020-12-24 | |
| 22 December 2020 | Open Life Science program & the Galaxy community: involvement in OLS-2 and invitation to apply to the next cohort | involvement in OLS-2 and invitation to apply to the next cohort |
| 16 December 2020 | New Paper "Galaxy CLIP-Explorer: a web server for CLIP-Seq data analysis" | |
| 15 December 2020 | New Paper "Proximity to injury, but neither number of nuclei nor ploidy define pathological adaptation and plasticity in cardiomyocytes" | |
| 8 December 2020 | December 2020 Galactic News | And what a month it is |
| 8 December 2020 | Training Infrastructure Feedback on the ELIXIR Belgium workshop “DDA and DIA proteomic analysis in Galaxy” | |
| 3 December 2020 | UseGalaxy.eu update to 20.09 | |
| 28 November 2020 | UseGalaxy.eu Tool Updates for 2020-11-28 | |
| 27 November 2020 | Training Infrastructure Feedback from Ambre Jousselin | |
| 27 November 2020 | ||
| 24 November 2020 | Activity report of the last 5 years of the Freiburg Galaxy Team | Crucial infrastructure serving more than 22,000 researchers |
| 23 November 2020 | Images stored in local OMERO instances are now available from Galaxy | An important step towards the accessibility of bioimage data |
| 22 November 2020 | New Paper "Decitabine induces gene derepression on monosomic chromosomes: in vitro and in vivo effects in adverse-risk cytogenetics AML" | |
| 21 November 2020 | UseGalaxy.eu Tool Updates for 2020-11-21 | |
| 21 November 2020 | New Paper "Diabetes changes gene expression but not DNA methylation in cardiac cells" | |
| 20 November 2020 | Simplified submission of SARS-CoV-2 data to open databases | |
| 19 November 2020 | Open Source Software Strategy approved by the European Commission | |
| 18 November 2020 | The NFDI-DataPLANT consortium has already kick-off! | |
| 17 November 2020 | New hardware: More storage and GPUs | de.NBI-Cloud has extended the support to the European Galaxy Server |
| 16 November 2020 | Biohackathon Europe 2020 | The Galaxy community has participated in several projects |
| 14 November 2020 | UseGalaxy.eu Tool Updates for 2020-11-14 | |
| 7 November 2020 | UseGalaxy.eu Tool Updates for 2020-11-07 | |
| 3 November 2020 | November 2020 Galactic News | JXTX Foundation, Events, Platforms, Jobs, Pubs, ... |
| 31 October 2020 | UseGalaxy.eu Tool Updates for 2020-10-31 | |
| 29 October 2020 | The first Paper Cuts Community Fest was a success! | So we will do this again in November! |
| 24 October 2020 | UseGalaxy.eu Tool Updates for 2020-10-24 | |
| 23 October 2020 | New Paper "NanoGalaxy: Nanopore long-read sequencing data analysis in Galaxy" | New paper in GigaScience |
| 23 October 2020 | New Paper "A single-cell RNA-sequencing training and analysis suite using the Galaxy framework" | |
| 22 October 2020 | More than 8000 packages/containers in Bioconda/BioContainers from more than 1000 contributors | from 1000+ contributors |
| 22 October 2020 | The EOSC-Life newsletter is out! | Galaxy training, CellProfiler, and more |
| 21 October 2020 | 20,000 users | |
| 17 October 2020 | UseGalaxy.eu Tool Updates for 2020-10-17 | |
| 14 October 2020 | Training Infrastructure Feedback from Leighton Pritchard | Addressing challenges the global coronavirus pandemic |
| 10 October 2020 | UseGalaxy.eu Tool Updates for 2020-10-10 | |
| 8 October 2020 | The Community Against COVID-19 | |
| 7 October 2020 | October 2020 Galactic News | Events & JTech, platforms, blog posts, tutorials, pubs, releases, ... |
| 3 October 2020 | UseGalaxy.eu Tool Updates for 2020-10-03 | |
| 26 September 2020 | UseGalaxy.eu Tool Updates for 2020-09-26 | |
| 23 September 2020 | EOSC-Life Open Calls | Two funding opportunities are now open in EOSC-Life. |
| 15 September 2020 | Remote training using Galaxy | Lessons learned from our ELIXIR Galaxy Machine Learning Workshop |
| 12 September 2020 | UseGalaxy.eu Tool Updates for 2020-09-12 | |
| 11 September 2020 | Enough talking - time to act! | |
| 10 September 2020 | The ELIXIR tools platform for COVID-19 research at the ECCB2020 | |
| 8 September 2020 | EOSC-Life has awarded two training projects to the European Galaxy team | From 1st EOSC-Life Training Open Call |
| 7 September 2020 | Freiburg Galaxy team is participating to the 2nd cohort of the Open Life Science program | |
| 6 September 2020 | Galaxy Europe Branding Material | |
| 5 September 2020 | UseGalaxy.eu Tool Updates for 2020-09-05 | |
| 2 September 2020 | New Paper "No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics" | |
| 1 September 2020 | September 2020 Galactic News | BCC2020 & GCC2021, events, platforms, blog posts, tutorials, pubs, releases, obs ... |
| 1 September 2020 | New Paper "pyGenomeTracks: reproducible plots for multivariate genomic data sets" | |
| 31 August 2020 | New Paper "Sawfly Genomes Reveal Evolutionary Acquisitions That Fostered the Mega-Radiation of Parasitoid and Eusocial Hymenoptera" | |
| 30 August 2020 | New Paper "An epigenetic map of malaria parasite development from host to vector" | |
| 29 August 2020 | UseGalaxy.eu Tool Updates for 2020-08-29 | |
| 22 August 2020 | Galaxy will join the NFDI-DataPLANT consortium in October 2020 | UseGalaxy.eu and DataPLANT consortium to record and deliver large data volumes for modern crop research |
| 22 August 2020 | UseGalaxy.eu Tool Updates for 2020-08-22 | |
| 22 August 2020 | 3 steps to get your tool into Galaxy - A real-world example | A real-world example |
| 15 August 2020 | UseGalaxy.eu Tool Updates for 2020-08-15 | |
| 8 August 2020 | UseGalaxy.eu Tool Updates for 2020-08-08 | |
| 1 August 2020 | UseGalaxy.eu Tool Updates for 2020-08-01 | |
| 30 July 2020 | Galaxy Africa Community Update | |
| 29 July 2020 | UseGalaxy.eu update to 20.05 | |
| 27 July 2020 | Climate Science at BCC2020 | July has been a very busy month for Galaxy Climate |
| 25 July 2020 | UseGalaxy.eu Tool Updates for 2020-07-25 | |
| 25 July 2020 | Training Infrastructure Feedback from Rodrigo Ortega Polo | |
| 23 July 2020 | Computational chemistry at BCC2020 | |
| 22 July 2020 | UseGalaxy.eu Tool Updates for 2020-07-22 | |
| 19 July 2020 | The landscape of SARS-CoV-2 RNA modifications | Studying the RNA modifications of SARS-CoV-2 to improve understanding of SARS viruses |
| 18 July 2020 | UseGalaxy.eu Tool Updates for 2020-07-18 | |
| 13 July 2020 | UseGalaxy.eu Tool Updates for 2020-07-13 | |
| 3 July 2020 | Processing of Single Cell RNA-Seq Data with Galaxy | |
| 3 July 2020 | Intuitive, reproducible high-throughput molecular dynamics in Galaxy: a tutorial | |
| 1 July 2020 | July 2020 Galactic News | BCC2020, SRA, Events, Platforms, Training, Jobs, ... |
| 1 July 2020 | CellProfiler now available in Galaxy | |
| 20 June 2020 | UseGalaxy.eu Tool Updates for 2020-06-20 | |
| 16 June 2020 | UseGalaxy.eu Tool Updates for 2020-06-16 | |
| 13 June 2020 | UseGalaxy.eu Tool Updates for 2020-06-13 | |
| 11 June 2020 | June 2020 Galactic News | James Taylor Foundation, BCC2020, Galaxy+SRA, Events, Platforms, ... |
| 8 June 2020 | Training Infrastructure Feedback from Marcel Schulz | |
| 6 June 2020 | UseGalaxy.eu Tool Updates for 2020-06-06 | |
| 3 June 2020 | The ChemicalToolbox: reproducible, user-friendly cheminformatics analysis on the Galaxy platform | cheminformatics.usegalaxy.eu |
| 30 May 2020 | UseGalaxy.eu Tool Updates for 2020-05-30 | |
| 24 May 2020 | UseGalaxy.eu Tool Updates for 2020-05-24 | |
| 15 May 2020 | UseGalaxy.eu Tool Updates for 2020-05-15 | |
| 4 May 2020 | May 2020 Galactic News | James Taylor, BCC2020, COVID-19 Response, and more |
| 2 May 2020 | UseGalaxy.eu Tool Updates for 2020-05-02 | |
| 25 April 2020 | UseGalaxy.eu Tool Updates for 2020-04-25 | |
| 23 April 2020 | Multi-omics Visualization Platform: An extensible Galaxy plug-in for multi-omics data visualization and exploration | a visualization plug-in that extends Galaxy-P’s advantages into the visualization of large, complex datasets |
| 18 April 2020 | UseGalaxy.eu Tool Updates for 2020-04-18 | |
| 14 April 2020 | Integrative meta-omics analysis | Metagenomics, Metatranscriptomics, Metaproteomics |
| 11 April 2020 | UseGalaxy.eu Tool Updates for 2020-04-11 | |
| 4 April 2020 | UseGalaxy.eu Tool Updates for 2020-04-04 | |
| 3 April 2020 | James Taylor | 1979 - 2020 |
| 2 April 2020 | Workshop on Workflow Management Systems | |
| 28 March 2020 | UseGalaxy.eu Tool Updates for 2020-03-28 | |
| 24 March 2020 | ChiRA tool suite - an integrated framework for Chimeric Read Analysis from RNA-RNA interactome data | an integrated framework for Chimeric Read Analysis from RNA-RNA interactome data |
| 24 March 2020 | ||
| 21 March 2020 | UseGalaxy.eu Tool Updates for 2020-03-21 | |
| 19 March 2020 | WirVsVirus Hackathon | March 20-22 |
| 14 March 2020 | UseGalaxy.eu Tool Updates for 2020-03-14 | |
| 11 March 2020 | Virtual screening against SARS-CoV-2 main protease | workflows for identifying potential ligands by virtual screening |
| 10 March 2020 | UseGalaxy.eu Tool Updates for 2020-03-10 | |
| 9 March 2020 | Storage issues and potential data loss | |
| 7 March 2020 | UseGalaxy.eu Tool Updates for 2020-03-07 | |
| 6 March 2020 | de.NBI Training Infrastructure Feedback from Helena Rasche | and was wildly successful |
| 1 March 2020 | ELIXIR-Italy launches Laniakea@ReCaS, a Galaxy “on-demand” platform | |
| 29 February 2020 | UseGalaxy.eu Tool Updates for 2020-02-29 | |
| 28 February 2020 | ||
| 28 February 2020 | ||
| 27 February 2020 | TIaaS Calendar and Stats site | Training Infrastructure as a Service |
| 26 February 2020 | ||
| 25 February 2020 | ||
| 21 February 2020 | UseGalaxy.eu Tool Updates for 2020-02-21 | |
| 19 February 2020 | ||
| 17 February 2020 | UseGalaxy.eu Tool Updates for 2020-02-17 | |
| 12 February 2020 | 12,000 users - 6,900,000 jobs - 13,300,000 datasets | |
| 11 February 2020 | Towards a European network of Galaxy resources | |
| 11 February 2020 | New Paper "Gene expression in immortalized versus primary isolated cardiac endothelial cells" | |
| 10 February 2020 | Training Infrastructure Feedback from Beata Scholtz | |
| 8 February 2020 | UseGalaxy.eu Tool Updates for 2020-02-08 | |
| 8 February 2020 | CORBEL staff visit program: Integration IDR - Galaxy | |
| 7 February 2020 | Galaxy provides support as an NFDI | |
| 6 February 2020 | Accessible and reproducible mass spectrometry imaging data analysis in Galaxy | |
| 1 February 2020 | UseGalaxy.eu Tool Updates for 2020-02-01 | |
| 30 January 2020 | ELIXIR tools platform meeting and Container SIS meeting in Paris | |
| 25 January 2020 | UseGalaxy.eu Tool Updates for 2020-01-25 | |
| 22 January 2020 | Outreach - Invited Talk for Introducing Galaxy to Uniklinik Freiburg | |
| 20 January 2020 | Training Infrastructure Feedback from Denny Popp | |
| 18 January 2020 | UseGalaxy.eu Tool Updates for 2020-01-18 | |
| 16 January 2020 | Human multi-omics data from UK Personal Genome Project accessible through UseGalaxy.eu | |
| 11 January 2020 | UseGalaxy.eu Tool Updates for 2020-01-11 | |
| 8 January 2020 | Galaxy Training Survey | We need your input on preparing and giving Galaxy Trainings |
| 8 January 2020 | January 2020 Galactic News | Events, Pubs, Blogs, Platforms, Tutorials, Doc, and Happy New Year too |
| 8 January 2020 | New Paper "Survey of metaproteomics software tools for functional microbiome analysis" | |
| 7 January 2020 | Massively Multiplayer Online Science in Galaxy to help Ecologists - A Citizen Science Project | |
| 5 January 2020 | Laborjournal article about Galaxy | |
| 5 January 2020 | 118 new plant reference genomes and transcriptomes added to Galaxy Europe! | |
| 4 January 2020 | UseGalaxy.eu Tool Updates for 2020-01-04 | |
| 28 December 2019 | UseGalaxy.eu Tool Updates for 2019-12-28 | |
| 21 December 2019 | UseGalaxy.eu Tool Updates for 2019-12-21 | |
| 14 December 2019 | UseGalaxy.eu Tool Updates for 2019-12-14 | |
| 10 December 2019 | Training Infrastructure Feedback from the Gallantries Project | |
| 9 December 2019 | December 2019 Galactic News | Events, Pubs, Blogs, Platforms, Tutorials, Doc, Jobs, Releases, and Platypi too. |
| 7 December 2019 | UseGalaxy.eu Tool Updates for 2019-12-07 | |
| 3 December 2019 | Training Infrastructure Feedback from Ambre Jousselin | |
| 2 December 2019 | 10,000 users, 6,370,000 jobs and 11,900,000 datasets | A big thank you to all our users and people that have contributed to this project! |
| 1 December 2019 | Training Infrastructure Feedback from Giovanni Widmer | |
| 30 November 2019 | The de.NBI / ELIXIR-DE training platform - Bioinformatics training in Germany and across Europe within ELIXIR | |
| 30 November 2019 | UseGalaxy.eu Tool Updates for 2019-11-30 | |
| 30 November 2019 | GraphClust2: Annotation and discovery of structured RNAs with scalable and accessible integrative clustering | |
| 26 November 2019 | PIPE-T paper published | |
| 23 November 2019 | Enough talking - time to act! | |
| 22 November 2019 | UseGalaxy.eu Tool Updates for 2019-11-23 | |
| 20 November 2019 | gProfiler is published and running on usegalaxy.eu | A toolset for functional enrichment analysis and conversions of gene lists. |
| 15 November 2019 | UseGalaxy.eu Tool Updates for 2019-11-15 | |
| 12 November 2019 | November 2019 Galactic News | Events! Pubs! Platforms! Jobs! Releases! |
| 11 November 2019 | SINA available in Galaxy - Accurate high-throughput multiple sequence alignment of ribosomal RNA genes | |
| 10 November 2019 | UseGalaxy.eu Tool Updates for 2019-11-10 | |
| 8 November 2019 | UseGalaxy – a bioinformatic shopping mall from Sivakumar Prakash | |
| 7 November 2019 | RNA-Seq Training feedback from Simon Moxon | |
| 2 November 2019 | Training update from Tomas Klingström | Agricultural Sciences collaboration between Swedish University of Agricultural sciences researchers and the Agricultural Research Council in South Africa |
| 23 October 2019 | Use the power of pandas / numpy to transform tabular datasets in a myriad of ways with our new Table Compute tool | Drop or duplicate given rows or columns from a tabular dataset, filter rows or columns on their properties, replace or transform table elements, ... |
| 19 October 2019 | UseGalaxy.eu Tool Updates for 2019-10-19 | |
| 18 October 2019 | Parent instance error | |
| 17 October 2019 | UseGalaxy.eu Tool Updates for 2019-10-17 | |
| 15 October 2019 | Training Infrastructure Feedback from Charles Girardot | |
| 12 October 2019 | UseGalaxy.eu Tool Updates for 2019-10-12 | |
| 5 October 2019 | UseGalaxy.eu Tool Updates for 2019-10-05 | |
| 2 October 2019 | October 2019 Galactic News | Events! Pubs! Platforms! Jobs! Doc! Tutorials! And some other news too. |
| 2 October 2019 | UseGalaxy.eu Upgrading to 19.09 | |
| 30 September 2019 | Another successful Galaxy high-throughput data analysis workshop in Freiburg | |
| 29 September 2019 | UseGalaxy.eu Tool Updates for 2019-09-29 | |
| 21 September 2019 | UseGalaxy.eu Tool Updates for 2019-09-21 | |
| 19 September 2019 | We are striking! | |
| 17 September 2019 | 8,000 users, 6,000,000 jobs and 11,000,000 datasets | |
| 16 September 2019 | Scientists must act on our own warnings to humanity | |
| 15 September 2019 | The European Galaxy server is part of the EOSC marketplace | |
| 14 September 2019 | UseGalaxy.eu Tool Updates for 2019-09-14 | |
| 7 September 2019 | UseGalaxy.eu Tool Updates for 2019-09-07 | |
| 6 September 2019 | First ATACseq training material! | |
| 31 August 2019 | UseGalaxy.eu Tool Updates for 2019-08-31 | |
| 30 August 2019 | September 2019 Galactic News | Events! Pubs! Platforms! Jobs! Doc! Tutorials! Releases! And some other news too. |
| 28 August 2019 | TIaaS Queue Status Update | |
| 24 August 2019 | UseGalaxy.eu Tool Updates for 2019-08-24 | |
| 20 August 2019 | PathwayMatcher published and running on usegalaxy.eu | |
| 18 August 2019 | UseGalaxy.eu Tool Updates for 2019-08-18 | |
| 17 August 2019 | Slamdunk - SLAMseq analysis for nucleotide-conversion sequencing datasets | SLAMseq analysis for nucleotide-conversion sequencing datasets |
| 10 August 2019 | UseGalaxy.eu Tool Updates for 2019-08-10 | |
| 6 August 2019 | Galaxy Community Conference - a brief summary! | A brief summary |
| 5 August 2019 | The Galaxy Genome Annotation Project - Scaling Genome Annotation for the Masses | Scaling Genome Annotation for the Masses |
| 3 August 2019 | UseGalaxy.eu Tool Updates for 2019-08-03 | |
| 2 August 2019 | MaxQuant goes Galaxy | |
| 1 August 2019 | August 2019 Galactic News | GCC2019 is done; BCC2020 is coming |
| 27 July 2019 | UseGalaxy.eu Tool Updates for 2019-07-27 | |
| 22 July 2019 | The European Galaxy Team with talks at ISMB/ECCB | |
| 20 July 2019 | 7,000 users and 10,000,000 datasets | |
| 19 July 2019 | UseGalaxy.eu Tool Updates for 2019-07-19 | |
| 13 July 2019 | UseGalaxy.eu Tool Updates for 2019-07-13 | |
| 6 July 2019 | UseGalaxy.eu Tool Updates for 2019-07-06 | |
| 30 June 2019 | GCC2019 will be livestreamed | |
| 28 June 2019 | July 2019 Galactic News | GCC2019 is here! (And other new stuff too) |
| 27 June 2019 | Tool Recommendation: What do I do next? | usegalaxy.eu has implemented tool recommendation, finally answering the question "what to do next." |
| 27 June 2019 | UseGalaxy.eu Tool Updates for 2019-06-27 | |
| 21 June 2019 | UseGalaxy.eu Tool Updates for 2019-06-21 | usegalaxy.eu is getting ready for GCC 2019 |
| 17 June 2019 | TIaaS Queue Status | using UseGalaxy.eu’s Training infrastructure as a Service (TIaaS). |
| 15 June 2019 | UseGalaxy.eu Tool Updates for 2019-06-15 | |
| 13 June 2019 | Native support for Elixir-AAI in Galaxy v.19.05 | the European Galaxy Server hosted by Elixir Germany is now ready to accept logins from users using their Elixir AAI identity for authentication.. |
| 10 June 2019 | Training Infrastructure Feedback from Nevena Veljkovic | |
| 8 June 2019 | UseGalaxy.eu Tool Updates for 2019-06-08 | |
| 6 June 2019 | UseGalaxy.eu Tool Updates for 2019-06-06 | |
| 6 June 2019 | UseGalaxy.eu update to 19.05 | |
| 3 June 2019 | June 2019 Galactic News | GCC2019 registration / Poster/Demo abstracts / sponsors, GTN CoFest, Platforms, Pubs, Jobs, Blog!, Training, Tools, Releases and more! |
| 24 May 2019 | Queue changes during GCC | |
| 20 May 2019 | Another successful Galaxy workshop in Melbourne | |
| 10 May 2019 | New Paper "The RNA workbench 2.0: next generation RNA data analysis" | |
| 10 May 2019 | Galaxy Workshop registration open! | |
| 6 May 2019 | May 2019 Galactic News | GCC2019 registration / Poster/Demo abstracts / sponsors, GTN CoFest, Platforms, Pubs, Jobs, Blog!, Training, Tools, Releases and more! |
| 26 April 2019 | A successful tool and training workshop for the ELIXIR Galaxy Community at Roscoff | |
| 24 April 2019 | GCC registration is open and abstracts can be submitted until Friday | |
| 23 April 2019 | UseGalaxy.eu Tool Updates for 2019-04-23 | |
| 23 April 2019 | Visit from Macromolecular Crystallography Group (Diamond Synchrotron) | |
| 14 April 2019 | FASTQC jobs and very long reads | |
| 6 April 2019 | UseGalaxy.eu Tool Updates for 2019-04-06 | |
| 4 April 2019 | ||
| 3 April 2019 | April 2019 Galactic News | GCC2019 registration and abstract submission, Platforms, Pubs, Jobs, Blog!, Training, Tools, Releases and more! |
| 3 April 2019 | We passed the 5,000,000th job and 5,000 users! | |
| 24 March 2019 | Convert mass spectrometry data file formats with msconvert | |
| 20 March 2019 | New Paper "Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315" | |
| 19 March 2019 | UseGalaxy.eu update to 19.01 | |
| 18 March 2019 | UseGalaxy.eu Downtime on 18th March | |
| 15 March 2019 | New Paper "Biomolecular Reaction and Interaction Dynamics Global Environment (BRIDGE) | |
| 14 March 2019 | New Paper "The Chimera and the Cyborg" | |
| 4 March 2019 | March 2019 Galactic News | GalaxyAdmins, GCC2019 Childcare sponsors, Platforms, Pubs, Jobs, Blog!, Training, Tools, Releases and more! |
| 4 March 2019 | A(nother) successful Galaxy HTS data analysis workshop in Freiburg | |
| 21 February 2019 | Empowering the annotation and discovery of structured RNAs with scalable and accessible integrative clustering | |
| 15 February 2019 | We are now part of the BioDATEN project! | |
| 11 February 2019 | New Paper "Pou5f3, SoxB1, and Nanog remodel chromatin on High Nucleosome Affinity Regions at Zygotic Genome Activation" | |
| 11 February 2019 | New Paper "Impact of angiogenic activation and inhibition on miRNA profiles of human retinal endothelial cells" | |
| 9 February 2019 | Tool Quest: Do you know the answer? | |
| 27 January 2019 | ||
| 26 January 2019 | ||
| 25 January 2019 | The GOEnrichment tool and tutorial are now available on Galaxy, by Daniel Sobral | |
| 25 January 2019 | Galaxy enhances Introduction to Genomics as part of Master program in Belgrade, by Nevena Veljkovic | |
| 19 January 2019 | A successful Galaxy RNA-seq workshop in Belgrade | |
| 18 January 2019 | Queue cleared | |
| 11 January 2019 | Another European CVMFS mirror is online | |
| 10 January 2019 | The European Galaxy Team has open positions! | |
| 10 January 2019 | Galaxy HTS Workshop 25.2.-1.3.2019 - fully booked | |
| 8 January 2019 | New hardware: 8 x 1 TB memory nodes | |
| 31 December 2018 | New tutorial: Visualization of RNA-Seq results with Volcano Plot | |
| 25 December 2018 | Gajan Kristnaskon kaj bonan novjaron! | |
| 19 December 2018 | Automatic resubmission of failed Galaxy jobs | |
| 11 December 2018 | UseGalaxy.eu update to 18.09 | |
| 1 December 2018 | Nominate a training for the 2019 Galaxy Community Conference (GCC2019) | |
| 30 November 2018 | ||
| 26 November 2018 | European Galaxy Days | |
| 23 November 2018 | ELIXIR Biohackathon in Paris | |
| 21 November 2018 | Automatic workflow testing | |
| 7 November 2018 | Upcoming Server Migration | |
| 5 November 2018 | New Paper "Uncontrolled Diabetes Mellitus Has No Major Influence on the Platelet Transcriptome" | |
| 1 November 2018 | Enthusiastic Response to the First ELIXIR-NL Galaxy Training Course in the Netherlands | |
| 31 October 2018 | Training Infrastructure Feedback from Maria Doyle | |
| 30 October 2018 | New Article 'Selbst ist der Forscher: Big-Data-Analysen leicht gemacht' | |
| 17 October 2018 | Heinz tools for network analysis over transcriptomics datasets | |
| 10 October 2018 | HiC Workshop for INDEPTH in Lucerne | |
| 10 October 2018 | New Article 'Datenanalyse mit dem Galaxy Server' | |
| 10 October 2018 | New Paper "Endothelial cell mineralocorticoid receptors oppose VEGF-induced gene expression and angiogenesis" | |
| 8 October 2018 | Initial release of 'gxadmin' tool | |
| 5 October 2018 | Successful Galaxy Proteomics workshop in Prague | |
| 26 September 2018 | Cloud Migration Postmortem | |
| 25 September 2018 | Galaxy and ... Bioconda, CLIP Explorer and RNA workbench @ GCB 2018 | |
| 24 September 2018 | A successful Galaxy HTS data analysis workshop | |
| 21 September 2018 | UseGalaxy.eu Downtime | |
| 1 September 2018 | Galaxy on de.NBI cloud now with more power | |
| 25 July 2018 | Freiburg Galaxy Team has an open position! | |
| 18 July 2018 | GCCBOSC | |
| 12 July 2018 | Temporarily Held Workflow Invocations | |
| 4 July 2018 | Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization | |
| 4 July 2018 | Bioconda: sustainable and comprehensive software distribution for the life sciences | |
| 3 July 2018 | Tool Usage Graphs | |
| 3 July 2018 | New Paper "The Transcription Factor ETV1 Induces Atrial Remodeling and Arrhythmia." | |
| 18 June 2018 | Database outage affecting UseGalaxy.eu | |
| 6 June 2018 | Data Carpentry workshop and CarpentryCon | |
| 5 June 2018 | Workshop for Galaxy training material and skills improvement | |
| 4 June 2018 | Temporary Quota Issue | |
| 30 May 2018 | New Paper "Nanopolish tools for signal-level analysis of Oxford Nanopore sequencing data is now available in Galaxy" | |
| 28 May 2018 | New Paper "The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update | |
| 25 May 2018 | UseGalaxy.eu update to 18.05 and GDPR | |
| 7 May 2018 | In memory of Christophe Caron | |
| 3 May 2018 | Nanopolish tools for signal-level analysis of Oxford Nanopore sequencing data is now available in Galaxy | |
| 26 April 2018 | DNS outage affecting UseGalaxy.eu | |
| 24 April 2018 | Fileserver Outage affecting Jobs | |
| 23 April 2018 | New Galaxy Team member! | |
| 18 April 2018 | Galaxy Workshop registration open! | |
| 11 April 2018 | Galaxy Africa | |
| 16 March 2018 | Galaxy User Conference: second and last day | |
| 15 March 2018 | Galaxy User Conference: a successful first day | |
| 15 March 2018 | Freiburg Galaxy becomes useGalaxy.eu | |
| 14 March 2018 | Updated PhageTerm | |
| 14 March 2018 | ELIXIR Galaxy community kick-off meeting | |
| 9 March 2018 | Propagating hashtags in a Galaxy history | |
| 8 March 2018 | Map and identify phenotypic mutations in model organism genomes | |
| 6 March 2018 | New paper "Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization" | |
| 3 March 2018 | deepTools3 is now available! | |
| 13 February 2018 | Program for the Galaxy User Conference | |
| 13 February 2018 | ELIXIR Galaxy kick-off meeting 14.03.2018 in Freiburg | |
| 11 February 2018 | Genome Annotation Reloaded | |
| 1 February 2018 | New Paper "Disseminating Metaproteomic Informatics Capabilities and Knowledge Using the Galaxy-P Framework" | |
| 30 January 2018 | New Paper "Distinct epigenetic programs regulate cardiac myocyte development and disease in the human heart in vivo" | |
| 30 January 2018 | We are now part of COST (CA16212)! | |
| 26 January 2018 | Next Galaxy Workshop on HTS data analysis in September 2018 | |
| 26 January 2018 | Updated Salmonella CRISPR Typing | |
| 18 January 2018 | Freiburg Galaxy Team has open positions! | |
| 18 January 2018 | Galaxy Workshop - Registration is closed! | |
| 17 January 2018 | ASaiM - an environment to analyze intestinal microbiota data | |
| 16 January 2018 | New Paper "High-resolution TADs reveal DNA sequences underlying genome organization in flies" | |
| 13 January 2018 | New Paper "Combinatorial omics analysis reveals perturbed lysosomal homeostasis in collagen VII-deficient keratinocytes" | |
| 12 January 2018 | ELIXIR Galxy Admin workshop in Oslo. | |
| 30 December 2017 | HiCExplorer - a suite of tools for reproducible Hi-C data analysis, quality control and visualization | |
| 30 December 2017 | GraphClust - Scalable clustering and annotation of structured and functional RNAs in an accessible and interactive fashion | |
| 11 December 2017 | Post Mortem: 2h Tool Execution Outage | |
| 10 December 2017 | Bioinformatic training with the B3Africa project | |
| 30 November 2017 | Our paper about the Galaxy Training material and community as a preprint on bioRXiv | |
| 30 November 2017 | Updated multiqc | |
| 28 November 2017 | New Paper "Sex differences in peripheral not central immune responses to paininducing injury" | |
| 24 November 2017 | Updated Small RNA Signatures | |
| 24 November 2017 | Updated small_rna_maps | |
| 24 November 2017 | Updated Generate readmap and histograms from alignment files from sRbowtie aligment | |
| 23 November 2017 | Updated DESeq2 | |
| 22 November 2017 | DNA methylation signatures follow preformed chromatin compartments in cardiac myocytes | |
| 21 November 2017 | Post Mortem: Upload and various tool failures | |
| 17 November 2017 | Updated Get flanks | |
| 17 November 2017 | Registration open for Galaxy HTS data analysis workshop 26.02.-02.03.2018 | |
| 17 November 2017 | Updated Fetch closest non-overlapping feature | |
| 16 November 2017 | Updated Subtract | |
| 16 November 2017 | Updated Merge | |
| 16 November 2017 | Updated Join | |
| 16 November 2017 | Updated Coverage | |
| 16 November 2017 | Updated Concatenate | |
| 16 November 2017 | Updated Intersect | |
| 16 November 2017 | Updated Complement | |
| 16 November 2017 | Updated Cluster | |
| 16 November 2017 | Updated Base Coverage | |
| 15 November 2017 | Successful Server Hardware Improvements | |
| 10 November 2017 | Updated Salmonella CRISPR Typing | |
| 9 November 2017 | Updated FASTQ to FASTA | |
| 8 November 2017 | Updated Trinity | |
| 8 November 2017 | 90+ tools updated | |
| 8 November 2017 | Updated Annotate smRNA dataset | |
| 8 November 2017 | Galaxy 17.09 released! | |
| 7 November 2017 | Workshop on Provisioning of Virtual Research Environments and Data Management | |
| 4 November 2017 | Minimap2 mapper for noisy long read sequences (e.g. Nanopore, PacBio) | |
| 2 November 2017 | First imaging mass spectrometry added | |
| 27 October 2017 | Updated Filter sequences by length | |
| 27 October 2017 | Updated Pick Fasta sequences | |
| 25 October 2017 | Latest version of MultiQC | |
| 24 October 2017 | Updated Normalize By Median | |
| 24 October 2017 | Talk @ 5th early-stage researchers Next-Generation Sequencing Symposium | |
| 23 October 2017 | Galaxy Training infrastructure @ de.NBI Symposium | |
| 21 October 2017 | Our paper about BioConda on bioRxiv | |
| 20 October 2017 | Updated NCBI blast suite | |
| 19 October 2017 | Helping at the Software Carpentry workshop @ EMBL Heidelberg and Talk @ de.NBIer | |
| 19 October 2017 | Updated sR_bowtie | |
| 17 October 2017 | MetaboFlow meeting (training and hackathon) | |
| 17 October 2017 | Updated cap3 | |
| 14 October 2017 | Updated Get Fasta from BioMAJ | |
| 13 October 2017 | Updated Parse blast output and compile hits | |
| 13 October 2017 | Updated Retrieve FASTA from NCBI | |
| 13 October 2017 | Updated Oases_optimiser | |
| 13 October 2017 | Updated fasta - tabular | |
| 13 October 2017 | Updated Clip adapter | |
| 13 October 2017 | Updated blast_to_scaffold | |
| 11 October 2017 | Our paper "Practical computational reproducibility in the life sciences" on bioRXiv | |
| 10 October 2017 | BioContainer Hackathon | |
| 29 September 2017 | deNBI Summer School - Computational genomics and RNA biology | |
| 29 September 2017 | VGCN: Rolling Replacement of Cloud Compute Resources | |
| 28 September 2017 | FIXED: upload jobs not scheduled | |
| 28 September 2017 | Updated pindel2vcf | |
| 27 September 2017 | Updated pindel | |
| 26 September 2017 | New Paper "Mitochondrial mutations in human cancer: Curation of translation" | |
| 26 September 2017 | Updated growthpread | |
| 22 September 2017 | End of our 5-day HTS Galaxy workshop in Freiburg, Germany | |
| 20 September 2017 | 3 Galaxy related posters @ GCB 2017 | |
| 14 September 2017 | We passed the 2.000.000th job! | |
| 31 August 2017 | Search and get data from ENA with ENASearch | |
| 31 August 2017 | Fixed: Galaxy Metadata Issue | |
| 2 August 2017 | STAR: Ultrafast alignment of RNA-seq data | |
| 23 July 2017 | Talks, poster and training @ ISMB and BOSC | |
| 2 July 2017 | W4M: Workflow4Metabolomics 3.0 | |
| 30 June 2017 | Galaxy Community Conference (GCC) | |
| 16 June 2017 | Updated macs2 | |
| 10 May 2017 | Updated dsrc | |
| 28 April 2017 | Updated IGblast | |
| 16 March 2017 | Updated STAR | |
| 16 March 2017 | Updated featureCounts | |
| 1 March 2017 | Updated Booster | |
| 20 February 2017 | Updated xxr | |
| 20 February 2017 | Updated elp | |
| 15 February 2017 | Updated breseq | |
| 13 February 2017 | Updated phageterm | |
| 7 February 2017 | Updated capsuleFinder | |
| 26 January 2017 | Updated conjdb | |
| 24 January 2017 | Updated TXSSCAN | |
| 23 January 2017 | Updated parsesnp | |
| 1 January 2017 | Updated blast2myDB |