| Wednesday, January 10 | All day | GMOD 2018 PAG Hackathon | Pre-conference, Brittany Room | Register | Scott Cain |
| Thursday, January 11 | All day | Tripal Hackathon | Pre-conference | Register | Meg Staton, Ethy Cannon |
| All day | GMOD 2018 PAG Hackathon | Pre-conference, Brittany Room | Register | Scott Cain |
| Friday, January 12 | All day | Tripal User Meeting | Pre-conference | Register | Meg Staton, Ethy Cannon |
| 9:00-5:00 | Introduction to Galaxy Workshop | Pre-conference workshop, California State University San Marcos | Register | Dave Clements, Arun Sethuraman |
| Saturday, January 13 | 10:40-10:57 | MiCloud and BioDocklets: A Plug and Play, on-Premises Bioinformatics Cloud, Providing Seamless, Single-Step Execution of NGS Pipelines | Workshop: Interoperability and Federation Across Bioinformatic Platforms and Resources, California Room | Paper, Slides | Konstantinos Krampis |
| 11:10-11:30 | James Hutton Institute Informatics Visualization Software | Workshop: Connecting Crop Phenotype and Genotype Data, Golden Ballroom | | Iain Milne |
| 12:00-12:10 | IRRI’s Pipeline for Integrating Genotype and Phenotype Data for Enhanced Product Development | Workshop: Connecting Crop Phenotype and Genotype Data, Golden Ballroom | | Joshua Cobb |
| Sunday, January 14 | 9:30-9:50 | Introducing Genomics through Genome Annotation: Broadening Access to Course-Based Undergraduate Research Experiences | Workshop: Resources and Programs for Undergraduate Education in Genomics, Towne - Meeting House | | Sarah Elgin |
| 11:30-11:50 | Updates to the Hardwood Genomics Project, a Website and Database for Tree Genetic and Genomic Data | Workshop: Forest Tree, Sunrise - Meeting House | Slides | Ming Chen |
| 4:36-4:54 | The Tripal Gateway Project: Supporting Exchange, Transfer and Analysis of Large-Scale Data for Online Biological Databases | Workshop: Tripal Database Network and Initiatives, California Room | | Stephen Ficklin |
| Monday, January 15 | 10:00-11:30 | P0054: G-OnRamp: Create Genome Browsers for Collaborative Eukaryotic Genome Annotations | Poster Session - Even Numbers | Poster | Yating Liu |
| | P0170: Genomic Open-Source Breeding Informatics Initiative Data Extract and Decision Support Tools | Poster Session - Even Numbers | | Star Yanxin Gao |
| | P0612: TreeGenes: Turning over a New Leaf | Poster Session - Even Numbers | | Emily Grau |
| | P0614: Efficiency, Design, and Analytical Improvements in Cartogratree, a Web-Framework for Association Mapping and Landscape Genomics in Forest Trees | Poster Session - Even Numbers | | Taylor Falk |
| | P1128: Phylogeny-Based Classification of Plant LTR Retrotransposons Fills the Gap between Superfamily and Family Levels and Provides Precise Annotation of Genomic Elements | Poster Session - Even Numbers | | Pavel Neumann |
| 3:00-4:30 | P0039: Apollo a Tool for Visually Editing Genome Annotations | Poster Session - Odd Numbers | | Nathan Dunn |
| | P0095: PiRATE: A Pipeline to Retrieve and Annotate Transposable Elements in Genome of Non-Model Organisms | Poster Session - Odd Numbers | | Jérémy Berthelier |
| | P0103: RepeatExplorer Galaxy Server for In-Depth Characterization of Repetitive Sequences in Next-Generation Sequencing Data | Poster Session - Odd Numbers | | Petr Novak |
| | P0235: Introducing Genomics through Gene Annotation: Broadening Access to Course-Based Undergraduate Research Experiences | Poster Session - Odd Numbers | | Sarah C R Elgin |
| | P0613: Orthoquery - a Tripal Module for Supporting Identification and Visualization of Orthogroups | Poster Session - Odd Numbers | | Sumaira Zaman |
| 7:45-8:00 | CyVerse UK: Widening the Scope to the UK and Beyond | Workshop: CyVerse - Software, Tools, and Services for Data-Driven Discovery, California Room | Slides | Alice Minotto |
| Tuesday, January 16 | 11:00-11:15 | C19: Efficiency, Design, and Analytical Improvements in Cartogratree, a Web-Framework for Association Mapping and Landscape Genomics in Forest Trees | Digital Tools and Resources Session 3, California Room | | Taylor Falk |
| 12:00-12:15 | C23: RepeatExplorer Galaxy Server for in-Depth Characterization of Repetitive Sequences in Next-Generation Sequencing Data | Digital Tools and Resources Session 3, California Room | | Petr Novak |
| 12:15-12:35 | The GOBII Project: Transforming Breeding through Genomic Data Management and Decision Support | Workshop: Genomics-Assisted Breeding, Town and Country Room | | Elizabeth Jones |
| 4:00-4:20 | Galaxy: Introduction and ecosystem | Workshop: Galaxy: An Open Platform for Data Analysis and Integration, California Room | Slides | Dave Clements |
| 4:20-5:30 | Using Galaxy for Genome Annotation | Workshop: Galaxy: An Open Platform for Data Analysis and Integration, California Room | Slides | Jeremy Goecks |
| 5:30-5:50 | South Green, a Hitchhiker’s Guide to Galaxy | Workshop: Galaxy: An Open Platform for Data Analysis and Integration, California Room | Slides | Marilyne Summo |
| 5:50-6:10 | Building a Bridge from the Tripal Community Database to Galaxy | Workshop: Galaxy: An Open Platform for Data Analysis and Integration, California Room | | Margaret Staton |
| Wednesday, January 17 | 10:30-10:45 | C25: PiRATE: A Pipeline to Retrieve and Annotate Transposable Elements of Non-Model Organisms | Digital Tools and Resources Session 4, California Room | Slides | Jérémy Berthelier |
| 11:05-11:25 | Galaxy Community Update | Workshop: GMOD, Pacific Salon 4-5 | Slides | Dave Clements |
| 11:25-11:45 | G-OnRamp: Collaborative Eukaryotic Genome Annotations with Galaxy and Apollo | Workshop: GMOD, Pacific Salon 4-5 | Slides | Luke Sargent |
