UseGalaxy.eu Tool Updates for 2019-12-21
On 2019-12-21, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #171
Convert Formats
- graphicsmagick_image_montage was updated to 39881709807e
FASTA/FASTQ
- fasta_filter_by_length was updated to c8cd0a03db49
- fasta_filter_by_length was updated to e626b3ff9922
Metagenomic Analysis
- khmer_abundance_distribution was updated to e0de12ae3fc2
- khmer_abundance_distribution_single was updated to 55109291a355
- khmer_count_median was updated to 77410799e8e9
- khmer_extract_partitions was updated to 2c763fb18010
- khmer_filter_abundance was updated to 8c6433857aa8
- khmer_filter_below_abundance_cutoff was updated to 569001af897d
- khmer_normalize_by_median was updated to 557cc16931f4
- khmer_partition was updated to e562293ee5ec
Graph/Display Data
- jbrowse was updated to 3235aeb45c22
Imaging
- 2d_auto_threshold was updated to 81f0cbca04a7
- 2d_feature_extraction was updated to 5791a7f65275
- 2d_local_threshold was updated to 497dcd834bb3
- 2d_split_binaryimage_by_watershed was updated to f8f7987586b7
- binary2labelimage was updated to 6e65fd971e13
- colocalization_viz was updated to c73332d5c3bb
- count_objects was updated to 664232d2a3f7
- detection_viz was updated to cb2d9de888a1
- imagecoordinates_flipaxis was updated to 5a210baa2ff1
- imagecoordinates_flipaxis was updated to f8f1100d0701
- overlay_moving_and_fixed_image was updated to bc324ec66719
- permutate_axis was updated to 91e255c78eb5
- projective_transformation was updated to 974cf4357707
- slice_image was updated to 8856a7c85e4c
- wsi_extract_top_view was updated to cfe88c6041e9
Variant Calling
- lofreq_alnqual was updated to 606542a18f82
- lofreq_call was updated to 31216d510164
- lofreq_filter was updated to 6f9ffff040ce
- lofreq_indelqual was updated to 5d6a078d30b0
- lofreq_viterbi was updated to 33a416e1659e
RNA Analysis
- feelnc was updated to 75427ceb32d1
- seurat was updated to 321bdd834266
RAD-seq
- stacks2_cstacks was updated to c541e62d6c56
Single-cell
- scanpy_cluster_reduce_dimension was updated to 766be978777a
- scanpy_filter was updated to a72e9faea895
- scanpy_inspect was updated to 9d1997b08ed6
- scanpy_normalize was updated to 55f2212bb675
- scanpy_plot was updated to cb18f2388815
- scanpy_remove_confounders was updated to 7a6701edcc92
Proteomics
- peptide_genomic_coordinate was updated to 5f49ffce52cb
Statistics
- keras_batch_models was updated to 62b85c8ad8fa
- keras_model_builder was updated to ed7c222e47e3
- keras_model_config was updated to c3813c64d678
- keras_train_and_eval was updated to 03f61bb3ca43
- ml_visualization_ex was updated to 6b94d76a1397
- model_prediction was updated to 6efb9bc6bf32
- scipy_sparse was updated to a2da4cebc584
- sklearn_build_pipeline was updated to 3f3c6dc38f3e
- sklearn_clf_metrics was updated to c89a3bfb3b1d
- sklearn_data_preprocess was updated to eb79bde99328
- sklearn_discriminant_classifier was updated to 64b771b1471a
- sklearn_ensemble was updated to af0523c606a7
- sklearn_estimator_attributes was updated to 7a9a9349eb42
- sklearn_feature_selection was updated to 41b109e70a7f
- sklearn_fitted_model_eval was updated to cf54bae8ad42
- sklearn_generalized_linear was updated to a8c7b9fa426c
- sklearn_model_fit was updated to 8861ece0b66f
- sklearn_model_validation was updated to a5aed87b2cc0
- sklearn_nn_classifier was updated to 699024d5c451
- sklearn_numeric_clustering was updated to 83938131dd46
- sklearn_pairwise_metrics was updated to bc17040617c0
- sklearn_regression_metrics was updated to a152c1d23379
- sklearn_sample_generator was updated to df579b31311d
- sklearn_searchcv was updated to c1ca24a1509d
- sklearn_stacking_ensemble_models was updated to a2e4a45c6083
- sklearn_svm_classifier was updated to 2df8f5c30edc
- sklearn_train_test_eval was updated to 2b8406e74f9e
- sklearn_train_test_split was updated to 5a092779412e
RAD-seq
- stacks2_cstacks was updated to c541e62d6c56
HiCExplorer
- hicexplorer_chicaggregatestatistic was updated to ee745fbe9f14
- hicexplorer_chicdifferentialtest was updated to fa6fc09ba259
- hicexplorer_chicplotviewpoint was updated to ae8bf5420df2
- hicexplorer_chicqualitycontrol was updated to 000ddd5f0f82
- hicexplorer_chicsignificantinteractions was updated to 2f279a01f3ff
- hicexplorer_chicviewpoint was updated to 6d76e532b669
- hicexplorer_chicviewpointbackgroundmodel was updated to bd11c6a972ef
- hicexplorer_hicadjustmatrix was updated to 74b3932d0836
- hicexplorer_hicaggregatecontacts was updated to ce16a538ab46
- hicexplorer_hicaverageregions was updated to f7c0aedd4be3
- hicexplorer_hicbuildmatrix was updated to 4b85ea34afae
- hicexplorer_hiccomparematrices was updated to 55b4b8bc250d
- hicexplorer_hiccompartmentspolarization was updated to 8d764e8acdf5
- hicexplorer_hicconvertformat was updated to e136f22c2a0f
- hicexplorer_hiccorrectmatrix was updated to 9949f055db84
- hicexplorer_hiccorrelate was updated to e89d515c3594
- hicexplorer_hicdetectloops was updated to 2d1f9759fa0e
- hicexplorer_hicfindrestrictionsites was updated to 8339f6708553
- hicexplorer_hicfindtads was updated to 6b7987d22eab
- hicexplorer_hicinfo was updated to 708e1b8eff5c
- hicexplorer_hicmergeloops was updated to 49b82255b72f
- hicexplorer_hicmergematrixbins was updated to 49c8055f6830
- hicexplorer_hicnormalize was updated to 4f36f2d51d33
- hicexplorer_hicpca was updated to b4b8343dd681
- hicexplorer_hicplotaverageregions was updated to ebe2b2d82a32
- hicexplorer_hicplotdistvscounts was updated to 34dc1acfcc62
- hicexplorer_hicplotmatrix was updated to 40b33e101621
- hicexplorer_hicplotsvl was updated to 450605e43e25
- hicexplorer_hicplotviewpoint was updated to 5e9c304c424c
- hicexplorer_hicquickqc was updated to 269c4246279d
- hicexplorer_hicsummatrices was updated to e89bc5e38823
- hicexplorer_hictransform was updated to ae9cc6dbfaca
- hicexplorer_hicvalidatelocations was updated to f011486cbaaa