Galaxy is an open-source platform for FAIR data analysis that enables users to:

  • use tools from various domains (that can be plugged into workflows) through its graphical web interface.
  • run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
  • manage data by sharing and publishing results, workflows, and visualizations.
  • ensure reproducibility by capturing the necessary information to repeat and understand data analyses.

The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.

News

Interactive tool collection is growing

New and improved interactive tools are available

We are striking!

usegalaxy.eu closes job-queue on September 15th to support climate strike

ChatGPT in Galaxy via Jupyter notebooks

Use ChatGPT in Galaxy Europe via JupyterLab interactive tool.

Survival analysis for right censored data using lifelines

Kaplan-Meier and Cox proportional hazards models are available for testing in Galaxy

Generic scatter plots for any Galaxy tabular data

A tool generating interactive HTML scatter plots from Galaxy tabular data is now available for testing

Events

Oct 4 - Oct 6European Galaxy Days (EGD)

European Galaxy Community meeting in Autumn

Oct 9 - Oct 13Workshop on Single-cell Data Analysis with Galaxy

In this workshop, scientists learn single-cell data analysis using Galaxy. There is no requirement of any programming skills.

Data transfer

For large files, FTP upload is also available on this server. Connect to port 21 with the same credentials you use to log into Galaxy. Once uploaded, open the Galaxy file upload menu, and click on the Choose FTP file button to import the files into your history.

If you want to analyse data already available on the GenOuest cluster, you can use the GenoLink or GenoCopy tools available in the "Get Data" section.

If you want to transfer files to the GenOuest cluster, use the GenoSend tool in the "Send Data" section.

Training

We regularly provide workshops.

But we cannot always meet capacity, so we've put all of our training materials online. This has become a community project with people from all over the world contributing training materials.

Topics include: variant analysis, transcriptomics, metagenomics, epigenetics, and many more!

Visit the Training Material View Publication

Galaxy training materials page

Our team

This Galaxy is maintained by the GenOuest bioinformatics platform in Rennes, France.

For any questions regarding this Galaxy server, please contact us.

Visit the team page

GenOuest logo