Galaxy is an open-source platform for FAIR data analysis that enables users to:

  • use tools from various domains (that can be plugged into workflows) through its graphical web interface.
  • run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
  • manage data by sharing and publishing results, workflows, and visualizations.
  • ensure reproducibility by capturing the necessary information to repeat and understand data analyses.

The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.

News

GPU-enabled JupyterLab enables interactive AI use-cases in Galaxy

Democratising GPU infrastructures by providing accelerated JuypterLab instances via Galaxy and combining them with HPC workflows

Simple and data privacy-aware publishing of genomic variance data from Galaxy to the Beacon project

Galaxy has gained a Beacon integration that enables users to publish genetic variance data conveniently via Beacon project

Accessibility in Galaxy 23.0 and beyond

Accessibility improvement Highlights for the upcoming 23.0 release, and a few words on accessibility in general

Building a distributed compute network across Europe

The Work Package 3 of the EuroScienceGateway project

The Climate community within the EuroScienceGateway project

Climate Community Strategy for Work Package 5

Events

Feb 2A practical workshop for (foodborne) pathogen detection from (direct Nanopore) sequencing data using Galaxy

The purpose of this workshop is to gain knowledge on detect (foodborne) pathogens from (direct Nanopore) sequencing data using Galaxy. The workshop will be on February 2nd 2023 as a 1-day hybrid (F2F at FHNW Muttenz, Switzerland and online), free and practical workshop.

Feb 6 - Feb 10Single-cell RNA-seq analysis using Galaxy

Participants will be guided through the droplet-based scRNA-seq analysis pipelines from raw reads to trajectories.

Feb 9Galaxy Community Call: 23.0 Release Testing Outcomes

A forum to share updates and discuss community-wide topics

Feb 9microGalaxy Community Call

microGalaxy is a communities of practice focusing on microbial analysis with Galaxy

Mar 2Galaxy Community Call

A forum to share updates and discuss community-wide topics

Data transfer

For large files, FTP upload is also available on this server. Connect to port 21 with the same credentials you use to log into Galaxy. Once uploaded, open the Galaxy file upload menu, and click on the Choose FTP file button to import the files into your history.

If you want to analyse data already available on the GenOuest cluster, you can use the GenoLink or GenoCopy tools available in the "Get Data" section.

If you want to transfer files to the GenOuest cluster, use the GenoSend tool in the "Send Data" section.

Training

We regularly provide workshops.

But we cannot always meet capacity, so we've put all of our training materials online. This has become a community project with people from all over the world contributing training materials.

Topics include: variant analysis, transcriptomics, metagenomics, epigenetics, and many more!

Visit the Training Material View Publication

Galaxy training materials page

Our team

This Galaxy is maintained by the GenOuest bioinformatics platform in Rennes, France.

For any questions regarding this Galaxy server, please contact us.

Visit the team page

GenOuest logo