Galaxy is an open-source platform for FAIR data analysis that enables users to:

  • use tools from various domains (that can be plugged into workflows) through its graphical web interface.
  • run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
  • manage data by sharing and publishing results, workflows, and visualizations.
  • ensure reproducibility by capturing the necessary information to repeat and understand data analyses.

The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.

News

Stronger together: first FAIR-EASE and EuroScienceGateway workshop

Presenting some outcomes from the first joined FAIR-EASE / EuroScienceGateway workshop

New Paper "A panel of blood-derived miRNAs with a stable expression pattern as a potential pan-cancer detection signature"

Sabbaghian and colleagues have used the European Galaxy server to study miRNAs as biomarkers for cancer

New Galaxy training: Genome-wide alternative splicing analysis

GTN hosts a new training for analyzing alternative splicing at genome-wide scale

Replacing the Job Router with Zero Downtime on EU

Mothballing the Sorting Hat – how we migrated our dynamic job routing

Galaxy taking part @ Applied Bioinformatics & Public Health Microbiology 2023

From the 3rd to the 5th of May, Engy Nasr from the Freiburg Galaxy team travelled to Hinxton, England to join and present her work at the Applied Bioinformatics & Public Health Microbiology 2023 conference

Events

Jun 12 - Jun 15Gallantries & ELIXIR-GOBLET Train the Trainers

This course introduces trainers to learning principles, training techniques, lesson, session, course, and material design as well as assessment and feedback. This course is has been developed for by trainers in the bioinformatics but is suitable for all trainers and educators in higher education.

Jun 15Galaxy Community Call

A forum to share updates and discuss community-wide topics

Jul 6Galaxy Community Call

A forum to share updates and discuss community-wide topics

Jul 10 - Jul 162023 Galaxy Community Conference (GCC2023)

The annual gathering of the Galaxy Community with opportunities to hear latest developments, get training, and meet everyone involved.

Jul 14 - Jul 18International Congress of Genetics

Meeting once every 5 years, and right on the heels of GCC2023 in a nearby location, come and check out this year's conference theme: Genetics and Genomics - Linking Life and Society.

Data transfer

For large files, FTP upload is also available on this server. Connect to port 21 with the same credentials you use to log into Galaxy. Once uploaded, open the Galaxy file upload menu, and click on the Choose FTP file button to import the files into your history.

If you want to analyse data already available on the GenOuest cluster, you can use the GenoLink or GenoCopy tools available in the "Get Data" section.

If you want to transfer files to the GenOuest cluster, use the GenoSend tool in the "Send Data" section.

Training

We regularly provide workshops.

But we cannot always meet capacity, so we've put all of our training materials online. This has become a community project with people from all over the world contributing training materials.

Topics include: variant analysis, transcriptomics, metagenomics, epigenetics, and many more!

Visit the Training Material View Publication

Galaxy training materials page

Our team

This Galaxy is maintained by the GenOuest bioinformatics platform in Rennes, France.

For any questions regarding this Galaxy server, please contact us.

Visit the team page

GenOuest logo