Hackathon - Improving the annotation of Galaxy resources for microbial data analysis and beyond
This hackathon aims to improve the annotation of Galaxy resources for microbial data analysis and beyond
Objectives
The objective of this hackathon is to improve the annotation of the Galaxy resources (tools, training, workflows) for microbial data analysis by:
- Linking microbial Galaxy tools to bio.tools to obtain EDAM ontology annotation
- Improving bio.tools annotations
- Annotating existing microbial-related tutorials with EDAM terms
- Reflecting on the addition of EDAM terms to workflows
- Reflecting on missing terms in the EDAM ontology for microbial data analyses
- Brainstorming about a way to connect tool annotations to improve training and workflow annotations
This hackathon is open to other communities than microGalaxy
General information
- Date: March 11th - 15th 2024 (full week)
- Location: Online
- Time: full day, 9/10am CET to open end
- Cost: Free
- Contact: Bérénice Batut, Paul Zierep
Online Attendance
We appreciate your participation from anywhere!
We will have a Zoom room, open the whole week from 9 am to 5 pm CET. The connection details are available in the agenda in the organizational GDoc
We will use the microGalaxy Matrix chat for communication.
We will also coordinate the work using the organizational GDoc
Participation
Registration is free. The space is unlimited.
To participate, add your name, your affiliation, your availability during the week, and your email in the "Participation" section of the organizational GDoc so we can include you in further communication.
Preliminary Schedule
The schedule is quite flexible. No requirement to join the whole week. 2 daily stand-ups will be run to accommodate different time zones.
Monday, March 11th
| Time (CET) | Topic |
|---|---|
| 09:30 | Welcome & Logistics |
| 09:40 | Presentation of personal goals and plans for the hackathon |
| 10:00 | Presentation of the process to link Galaxy tools to bio.tools and improve bio.tools annotations |
| 10:30 | Hacking! |
| 16:00 | Stand-up & New participant onboarding |
Tuesday, March 12th
| Time (CET) | Topic |
|---|---|
| 09:30 | Stand-up & New participant onboarding |
| 16:00 | Stand-up & New participant onboarding |
Wednesday, March 13th
| Time (CET) | Topic |
|---|---|
| 09:00 | Reflection on missing terms in the EDAM ontology for microbial data analysis |
| 09:30 | Stand-up & New participant onboarding |
| 16:00 | Stand-up & New participant onboarding |
Thursday, March 14th
| Time (CET) | Topic |
|---|---|
| 09:00 | Brainstorming on a way to connect tools annotation to help training and workflow annotation |
| 09:30 | Stand-up & New participant onboarding |
| 16:00 | Stand-up & New participant onboarding |
Friday, March 15th
| Time (CET) | Topic |
|---|---|
| 09:30 | Stand-up & Outcome collection |
| 16:00 | Stand-up & Outcome collection |
Event rules and regulations
The Hackathon will abide the Galaxy Project CoC. Please, make sure that you read it before the event.
Supporters
