Galaxy Tour de France 2012

    Galaxy Tour de France 2012

    Galaxy went on tour in France during the last week of May. Workshops were help in Perpignan, Montpellier, Lyon, and Paris. Registration was free.

    Itinerary

    Laboratoire de Biologie Intégrative des Organismes Marins
    University of Perpignan Via Domitia
    28 May, Perpignan
    MABL/LIRMM
    ATGC Bioinformatics Platform
    29 May, CNRS Montpellier
    Laboratoire Biométrie et Biologie Evolutive
    30 May, Lyon
    Inserm, Mines ParisTech, Institut Curie, Bioinformatics and Computational Systems Biology of Cancer
    1 June, Paris
    Galaxy for Biologists
    9:00 - 12:00
    This session is now full
    Galaxy for Biologists
    and Developers

    12:00 - 15:30
    Space available
    Galaxy for Biologists
    9:00 - 12:00
    Space available
    Galaxy for Biologists
    9:00 - 12:00
    Space available
    Galaxy for Developers
    14:00 - 17:00
    This session is now full
    Galaxy for Developers
    14:00 - 17:00
    Space available
    Galaxy for Developers
    14:00 - 17:00
    Space available
    Laboratoire Génome et
    Développement des Plantes
    Bâtiment T
    58, Avenue Paul Alduy
    66860 Perpignan
    CNRS campus du CNRS
    1919 Route de Mende
    Montpellier
    Bâtiment Thémis - Amphi 8
    11 Avenue Gaston Berger
    Université Lyon 1
    Villeurbanne
    Institut Curie
    Amphithéatre Constant Burg
    12 rue Lhomond
    75005 Paris, France

    Perpignan: 28 May

    Location:

    Perpignan Workshop location. Click to enlarge.
    Perpignan workshop location

    The workshops will be held in the seminar room of the Laboratoire Génome et Développement des Plantes (LGDP) of the University of Perpignan, the address details are:

    Laboratoire Génome et Développement des Plantes
    Bâtiment T
    58, Avenue Paul Alduy
    66860 Perpignan

    Montpellier: 29 May

    Location:

    CNRS campus du CNRS
    1919 Route de Mende
    Montpellier

    Lyon: 30 May

    Location: Bâtiment Thémis - Amphi 8
    11 Avenue Gaston Berger
    Université Lyon 1
    Villeurbanne

    Paris: 1 June

    Paris Workshop location and nearby Metro and RER stations. Click to enlarge.
    Paris workshop location
    nearby Metro & RER stations.

    Location:

    Institut Curie
    Amphithéatre Constant Burg
    12 rue Lhomond
    75005 Paris, France

    If you come by Metro: Line 10 stop at "Cardinal Lemoine"
    Line 7 stop at "Place Monge"

    If you come by RER: RER B stop at Luxembourg

    If you attend both workshops and plan to eat in the area, there are many choices nearby (bakery, fast food, restaurants,...).


    Workshop Details

    Galaxy for Biologists

    9:00-12:00

    • Basic concepts: interface, histories, workflows
    • Analysis of NGS data: polymorphism discovery, ChIP-seq. RNA-seq
    • Using your own instance on the Cloud
    • Publishing supplemental results with Galaxy Pages

    Galaxy for Developers

    Slides from Nate Coraor

    14:00-17:00

    • Galaxy architecture
    • Wrapping tools for Galaxy system, Galaxy Toolshed
    • API
    • Running Production Galaxy sites: Infrastructure, Job Scheduling, Data and User management

    Meet the Team!

    Nate Coraor!   Anton Nekrutenko!   James Taylor!

    Sponsors

    This tour was generously sponsored and hosted by the Laboratoire de Biologie Intégrative des Organismes Marins, MABL/LIRMM, the ATGC Bioinformatics Platform, the Laboratoire Biométrie et Biologie Evolutive, and the Inserm - Mines ParisTech - Institut Curie - Bioinformatics and Computational Systems Biology of Cancer. Further support for the workshops was provided by an Amazon Web Services (AWS) Education Grant.

    Laboratoire de Biologie Intégrative des Organismes Marins   CNRS    Laboratoire Biométrie et Biologie Evolutive   Inserm, Mines ParisTech, Institut Curie, Bioinformatics and Computational Systems Biology of Cancer   Amazon Web Services (AWS) in Education Grant