Galaxy Erasmus MC
The homepage of the Erasmus MC Galaxy community
Galaxy is an open-source platform for FAIR data analysis that enables users to:
- use tools from various domains (that can be plugged into workflows) through its graphical web interface.
- run code in interactive environments (RStudio, Jupyter...) along with other tools or workflows.
- manage data by sharing and publishing results, workflows, and visualizations.
- ensure reproducibility by capturing the necessary information to repeat and understand data analyses.
The Galaxy Community is actively involved in helping the ecosystem improve and sharing scientific discoveries.
News
New Interactive Tools Panel in Galaxy 25.0
New panel allocated for interactive tools on Galaxy
🔬 QuPath-Galaxy: Bringing digital pathology image analysis to your browser.
Explore whole slide images and run powerful tissue analysis directly in your browser with the QuPath-Galaxy interactive tool.
RSpace is now integrated with Galaxy
Analyze data with Galaxy, keep it under control on RSpace
Freiburg Galaxy team at the EGI 2025
From June 03rd to 6th, members from the Freiburg Galaxy team travelled to Santander, Spain to participate and present the EuroScienceGateway (ESG) project at the EGI2025 meeting
The Galaxy 25.0 Release is Live!
The latest Galaxy release is here and is packed with enhanced collection capabilities, streamlined workflow management, interactive tools and visualizations improvements, and new integrations to accelerate your research.
Events
Jun 30 - Jul 4From Data to Discovery: Metagenomics, RNA-Seq - NGS Bioinformatics with Galaxy
This course introduces scientists to the data analysis platform Galaxy
Jul 8 - Jul 9The first Galaxy Tool Development Workshop in Freiburg, Germany
Learn to build and publish Galaxy tools in our first hands-on workshop in Freiburg.
Learn how Galaxy supports research data analysis and FAIR data management in this online talk hosted by Imperial College London.
FTP Upload
For large files, FTP upload is also available on this server. Connect to port 23 with the same credentials you use to log into Galaxy. Once uploaded, open the Galaxy file upload menu, and click on the Choose FTP file button to import the files into your history.
As an example, a screenshot of the configuration settings for FileZilla can be found here.
Training
We regularly provide workshops.
But we cannot always meet capacity, so we've put all of our training materials online. This has become a community project with people from all over the world contributing training materials.
Topics include: variant analysis, transcriptomics, metagenomics, epigenetics, and many more!
Our team
This Galaxy is maintained by the Bioinformatics group of the department of Pathology.
For any questions regarding this Galaxy server, please contact us.